Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1930.2 955 100.0
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1510.7 945 79.7
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1478.0 943 77.6
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1476.5 946 78.1
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1451.8 958 75.8
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 0.0e+00 1360.1 948 71.6
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 0.0e+00 1358.6 957 71.9
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 0.0e+00 1358.2 940 72.6
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 0.0e+00 1342.0 949 71.7
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1306.2 971 69.3
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1300.0 935 70.1
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 0.0e+00 1295.4 942 68.5
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1294.6 965 68.4
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 0.0e+00 1293.5 937 70.0
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 0.0e+00 1279.2 933 69.9
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 0.0e+00 1276.9 990 66.2
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 0.0e+00 1267.3 947 67.6
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1263.1 940 68.9
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1262.7 939 69.3
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1260.4 937 68.6
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1257.3 951 68.3
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1256.5 946 67.2
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1254.2 948 67.3
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1252.3 934 68.0
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1250.7 923 68.7
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1249.2 946 67.1
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1248.8 946 68.5
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1246.1 947 67.8
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1243.4 947 67.5
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1238.8 979 65.3
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 0.0e+00 1232.2 939 67.4
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 0.0e+00 1231.9 964 66.1
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 0.0e+00 1231.5 966 65.1
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1231.5 938 67.3
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 0.0e+00 1229.2 934 66.0
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1225.3 955 66.6
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 0.0e+00 1224.5 931 67.5
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 0.0e+00 1224.2 930 67.0
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 0.0e+00 1223.4 934 65.8
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 0.0e+00 1223.0 938 66.7
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 0.0e+00 1223.0 930 67.7
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1219.1 943 66.7
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 0.0e+00 1215.3 933 66.9
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1210.3 1022 61.8
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 0.0e+00 1208.7 1046 62.1
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1201.0 996 62.9
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1197.6 981 63.4
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 0.0e+00 1194.1 943 65.1
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1191.8 936 66.1
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 0.0e+00 1189.1 939 65.8
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 0.0e+00 1189.1 1001 62.0
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 0.0e+00 1186.8 972 62.9
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 0.0e+00 1186.4 961 64.4
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1183.3 1004 61.6
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1183.3 927 65.3
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 0.0e+00 1182.9 952 64.2
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 0.0e+00 1181.0 956 64.2
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 0.0e+00 1180.6 933 64.0
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1179.9 1004 61.5
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1178.7 1004 61.4
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 0.0e+00 1175.2 948 63.9
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 0.0e+00 1172.1 1049 59.3
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 0.0e+00 1169.1 933 63.5
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1167.9 927 65.9
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 0.0e+00 1160.6 925 63.6
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 0.0e+00 1159.8 1019 60.9
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1156.7 973 62.4
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 0.0e+00 1150.2 957 61.2
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1144.8 943 62.0
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 0.0e+00 1143.3 935 64.0
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1140.6 870 67.5
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1140.2 950 62.7
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1139.4 954 61.5
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 0.0e+00 1139.0 942 62.1
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 0.0e+00 1138.3 963 60.6
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1137.9 950 61.6
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 0.0e+00 1137.1 944 62.5
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 0.0e+00 1137.1 941 60.8
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 0.0e+00 1135.9 965 61.2
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 0.0e+00 1135.6 944 62.0
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1132.1 948 61.6
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1131.3 942 61.3
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 0.0e+00 1130.5 946 62.1
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1129.8 825 69.3
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1128.6 948 61.5
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1128.6 948 61.5
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1127.5 945 60.6
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 0.0e+00 1127.1 953 61.5
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 0.0e+00 1124.8 1071 57.5
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1124.0 939 60.8
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 0.0e+00 1121.7 932 63.2
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1115.1 917 63.0
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1114.4 909 63.1
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1113.6 940 60.1
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1113.6 940 60.1
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1112.8 956 60.5
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 0.0e+00 1099.7 934 60.4
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 0.0e+00 1099.7 861 65.2
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1098.2 934 60.1
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1096.6 921 63.4
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 0.0e+00 1088.9 935 60.5
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 0.0e+00 1084.3 856 65.1
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 3.3e-311 1071.6 983 58.2
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 8.4e-310 1067.0 869 63.8
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 1.9e-309 1065.8 971 59.1
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 7.4e-306 1053.9 955 57.7
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 2.1e-300 1035.8 996 55.0
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 3.9e-299 1031.6 1196 50.9
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 1.6e-297 1026.2 974 56.3
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 8.2e-297 1023.8 842 63.2
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.2e-295 1020.0 1066 53.1
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 1.9e-277 959.5 928 56.1
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 1.0e-267 927.2 955 54.2
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 1.2e-263 913.7 772 60.6
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 8.3e-257 891.0 921 51.4
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 4.5e-255 885.2 697 66.0
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 4.7e-252 875.2 765 58.0
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 3.7e-249 865.5 756 62.3
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 8.3e-249 864.4 885 50.4
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 1.6e-247 860.1 858 52.9
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 1.1e-240 837.4 1071 43.9
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 6.8e-235 818.1 718 60.0
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 1.1e-208 731.1 648 59.3
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 5.1e-198 695.7 629 59.1
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 8.1e-196 688.3 411 82.0
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 9.0e-195 684.9 677 56.9
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.3e-193 681.0 718 54.6
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 3.8e-177 626.3 427 74.9
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 3.2e-176 623.2 381 80.6
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 1.4e-163 581.3 411 72.3
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 2.4e-155 553.9 581 53.2
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 8.5e-153 545.4 474 61.8
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 2.5e-128 464.2 289 77.2
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.2e-127 461.8 562 48.2
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 2.1e-127 461.1 481 52.8
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 1.7e-121 441.4 282 75.2
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.7e-121 441.4 299 70.9
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 9.9e-117 425.6 317 65.6
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 7.6e-101 372.9 326 56.7
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 1.3e-92 345.5 222 74.8
vmacro14429 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.9e-72 278.5 277 58.8
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.3e-60 239.2 139 82.0
BcaB04g18154 Brassica carinata HOM05D004101 ORTHO05D005221 3.7e-55 221.1 157 69.4
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 1.5e-53 215.7 211 53.1
QL93p1879_0034 Quercus lobata HOM05D004101 ORTHO05D005221 5.7e-48 197.2 134 72.4
A09p34730 Brassica napus HOM05D004101 ORTHO05D005221 1.4e-46 192.6 141 66.7
Aqoxy2G00645 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 8.0e-34 150.2 129 58.9
PSO017G1167 Papaver somniferum HOM05D004101 ORTHO05D005221 2.0e-29 135.6 115 57.4
SEGI_18218 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 2.3e-28 132.1 76 80.3
SEGI_28351 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 2.9e-28 131.7 115 58.3
SEGI_38945 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 1.2e-24 119.8 86 62.8
BolC1t03898H Brassica oleracea HOM05D010251 ORTHO05D005221 5.0e-20 104.4 160 40.6
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 1.6e-18 99.4 66 71.2
SHI03798 Sapria himalayana HOM05D004101 ORTHO05D005221 1.9e-14 85.9 283 30.4
SMO200G0098 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 1.3e-12 79.7 82 51.2
Os07g0406600 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 8.6e-12 77.0 50 72.0
COL.COLO4_06915 Corchorus olitorius HOM05D004101 ORTHO05D005221 5.6e-11 74.3 47 70.2
Medtr5g080490 Medicago truncatula HOM05D004101 ORTHO05D005221 5.6e-11 74.3 52 63.5
Pp3c3_10160 Physcomitrium patens HOM05D004101 ORTHO05D005221 5.6e-11 74.3 94 38.3
BcaC05g27051 Brassica carinata HOM05D004101 ORTHO05D027158 4.7e-10 71.2 146 36.3
Lsat_1_v5_gn_5_153621 Lactuca sativa HOM05D004101 ORTHO05D005221 1.4e-09 69.7 68 48.5
BolC2t10203H Brassica oleracea HOM05D004101 ORTHO05D027158 2.6e-08 65.5 53 56.6
BolC2t10210H Brassica oleracea HOM05D004101 ORTHO05D027158 2.6e-08 65.5 53 56.6
A01p24750 Brassica napus HOM05D004101 ORTHO05D027158 3.4e-08 65.1 53 56.6
SMO200G0135 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 3.4e-08 65.1 62 51.6
VMungo0251G0072 Vigna mungo HOM05D004101 ORTHO05D005221 1.3e-07 63.2 35 71.4
CDE08G1083 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 1.4e-06 59.7 69 44.9
SMO209G0008 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 1.9e-06 59.3 52 57.7


User provided reference genes

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