Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022992 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 1.3e-117 426.4 210 100.0
Dinv41043 Davidia involucrata HOM05D003947 ORTHO05D004614 3.5e-91 338.6 210 81.0
Actinidia29546 Actinidia chinensis HOM05D003947 ORTHO05D004614 4.5e-91 338.2 210 79.5
Actinidia17770 Actinidia chinensis HOM05D003947 ORTHO05D004614 1.6e-88 329.7 210 78.1
Hma1.2p1_0678F.1_g202000 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 1.2e-86 323.6 210 76.2
Hma1.2p1_0358F.1_g134715 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 7.5e-86 320.9 212 75.5
GSVIVG01034579001 Vitis vinifera HOM05D003947 ORTHO05D004614 8.0e-80 300.8 210 75.7
CiPaw.15G012800 Carya illinoinensis HOM05D003947 ORTHO05D004614 1.3e-77 293.5 211 72.5
Cfa018286 Carpinus fangiana HOM05D003947 ORTHO05D004614 2.9e-77 292.4 210 72.4
Nitab4.5_0002812g0010 Nicotiana tabacum HOM05D003947 ORTHO05D004614 4.9e-77 291.6 210 68.6
Rhsim11G0087300 Rhododendron simsii HOM05D003947 ORTHO05D004614 4.9e-77 291.6 210 71.0
Sabra05G0149600 Salix brachista HOM05D003947 ORTHO05D004614 4.9e-77 291.6 210 71.0
Cc10_g15190 Coffea canephora HOM05D003947 ORTHO05D004614 6.4e-77 291.2 210 70.5
Potri.005G196300 Populus trichocarpa HOM05D003947 ORTHO05D004614 3.2e-76 288.9 210 71.4
TWI60G0849 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 9.2e-76 287.3 210 67.6
Nitab4.5_0000099g0180 Nicotiana tabacum HOM05D003947 ORTHO05D004614 1.2e-75 287.0 210 68.1
Prupe.8G040000 Prunus persica HOM05D003947 ORTHO05D004614 1.2e-75 287.0 210 71.0
Peaxi162Scf00360g00029 Petunia axillaris HOM05D003947 ORTHO05D004614 2.1e-75 286.2 210 68.1
Thecc.08G158700 Theobroma cacao HOM05D003947 ORTHO05D004614 2.1e-75 286.2 210 69.0
MD10G1033900 Malus domestica HOM05D003947 ORTHO05D004614 4.6e-75 285.0 210 69.0
Solyc04g071970.4 Solanum lycopersicum HOM05D003947 ORTHO05D004614 4.6e-75 285.0 210 68.6
Duzib116G0212 Durio zibethinus HOM05D003947 ORTHO05D004614 1.0e-74 283.9 210 69.5
TWI32G0514 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 1.3e-74 283.5 210 68.6
PGSC0003DMG401025066 Solanum tuberosum HOM05D003947 ORTHO05D004614 1.7e-74 283.1 210 68.1
Sopen04g027950 Solanum pennellii HOM05D003947 ORTHO05D004614 3.0e-74 282.3 210 68.1
Atru.chr13.2012 Acer truncatum HOM05D003947 ORTHO05D004614 6.6e-74 281.2 214 69.2
Sabra02G0051800 Salix brachista HOM05D003947 ORTHO05D004614 8.6e-74 280.8 210 69.5
MD05G1032900 Malus domestica HOM05D003947 ORTHO05D004614 5.6e-73 278.1 210 67.6
vmacro21121 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 5.6e-73 278.1 186 74.7
Potri.002G064900 Populus trichocarpa HOM05D003947 ORTHO05D004614 3.6e-72 275.4 210 70.5
Manes.18G094500 Manihot esculenta HOM05D003947 ORTHO05D004614 1.4e-71 273.5 210 66.7
Duzib093G0177 Durio zibethinus HOM05D003947 ORTHO05D004614 1.5e-70 270.0 210 66.7
Manes.02G182900 Manihot esculenta HOM05D003947 ORTHO05D004614 2.0e-70 269.6 210 65.7
Gohir.D05G247600 Gossypium hirsutum HOM05D003947 ORTHO05D004614 1.9e-68 263.1 213 67.6
Ciclev10002453m.g Citrus clementina HOM05D003947 ORTHO05D004614 2.4e-68 262.7 216 66.2
Eucgr.F04191 Eucalyptus grandis HOM05D003947 ORTHO05D004614 2.4e-68 262.7 210 65.2
Lj7P382T65 Lonicera japonica HOM05D003947 ORTHO05D004614 3.2e-68 262.3 186 73.1
CANSAT25G3237 Cannabis sativa HOM05D003947 ORTHO05D004614 4.1e-68 261.9 210 65.7
Glyma.10G221900 Glycine max HOM05D003947 ORTHO05D004614 4.1e-68 261.9 211 64.5
Gorai.009G258400 Gossypium raimondii HOM05D003947 ORTHO05D004614 4.1e-68 261.9 213 67.1
CiPaw.16G008700 Carya illinoinensis HOM05D003947 ORTHO05D004614 7.1e-68 261.2 210 66.7
Haze_17801 Corylus avellana HOM05D003947 ORTHO05D004614 7.1e-68 261.2 185 74.1
FvH4_2g13060 Fragaria vesca HOM05D003947 ORTHO05D004614 7.1e-68 261.2 210 64.8
Gohir.A05G246100 Gossypium hirsutum HOM05D003947 ORTHO05D004614 9.2e-68 260.8 213 67.1
vmacro01489 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 2.1e-67 259.6 187 71.7
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 2.7e-67 259.2 209 64.1
RcHm_v2.0_Chr6g0274321 Rosa chinensis HOM05D003947 ORTHO05D004614 6.0e-67 258.1 211 66.4
Glyma.20G169600 Glycine max HOM05D003947 ORTHO05D004614 1.0e-66 257.3 211 63.0
VMungo0720G0983 Vigna mungo HOM05D003947 ORTHO05D004614 5.1e-66 255.0 211 63.0
Gorai.005G077400 Gossypium raimondii HOM05D003947 ORTHO05D004614 6.6e-66 254.6 212 63.7
Actinidia04751 Actinidia chinensis HOM05D003947 ORTHO05D004614 1.5e-65 253.4 210 65.7
FAN27G1126 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.9e-65 253.1 210 63.3
Gohir.D02G068500 Gossypium hirsutum HOM05D003947 ORTHO05D004614 1.9e-65 253.1 212 63.2
Gohir.A02G062801 Gossypium hirsutum HOM05D003947 ORTHO05D004614 4.3e-65 251.9 212 63.2
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 5.6e-65 251.5 205 64.4
Phvul.007G083100 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 9.6e-65 250.8 211 61.6
Sc02g0003850 Simmondsia chinensis HOM05D003947 ORTHO05D004614 1.6e-64 250.0 210 61.4
PGR044G0664 Punica granatum HOM05D003947 ORTHO05D004614 4.7e-64 248.4 212 62.3
QL02p038162 Quercus lobata HOM05D003947 ORTHO05D004614 4.7e-64 248.4 185 69.2
Lj5g0019118 Lotus japonicus HOM05D003947 ORTHO05D004614 8.1e-64 247.7 213 62.4
Ca_10666_v3 Cicer arietinum L. HOM05D003947 ORTHO05D004614 2.4e-63 246.1 211 60.7
MSTRG.25300 Avicennia marina HOM05D003947 ORTHO05D004614 3.1e-63 245.7 225 59.1
Psat6g190840 Pisum sativum HOM05D003947 ORTHO05D004614 3.1e-63 245.7 211 61.1
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 4.0e-63 245.4 209 60.3
Lalb_Chr21g0305571 Lupinus albus HOM05D003947 ORTHO05D004614 6.8e-63 244.6 211 61.1
MSTRG.24219 Avicennia marina HOM05D003947 ORTHO05D004614 1.2e-62 243.8 217 61.8
arahy.Tifrunner.gnm1.ann1.H1TMWI Arachis hypogaea HOM05D003947 ORTHO05D004614 2.6e-62 242.7 210 61.0
COL.COLO4_03360 Corchorus olitorius HOM05D003947 ORTHO05D004614 7.6e-62 241.1 185 67.6
Dinv25896 Davidia involucrata HOM05D003947 ORTHO05D004614 2.9e-61 239.2 210 64.3
TAR376G1220 Trochodendron aralioides HOM05D003947 ORTHO05D004614 2.9e-61 239.2 206 62.6
CSS0014660 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 3.8e-61 238.8 210 60.5
arahy.Tifrunner.gnm1.ann1.2W58SS Arachis hypogaea HOM05D003947 ORTHO05D004614 4.9e-61 238.4 210 60.5
TAR625G1169 Trochodendron aralioides HOM05D003947 ORTHO05D004614 6.4e-61 238.0 186 65.1
Cpa.g.sc26.88 Carica papaya HOM05D003947 ORTHO05D004614 8.4e-61 237.7 185 67.6
Medtr1g098260 Medicago truncatula HOM05D003947 ORTHO05D004614 4.2e-60 235.3 233 56.2
Sed0008617 Sechium edule HOM05D003947 ORTHO05D004614 9.3e-60 234.2 213 60.1
ClCG08G003050 Citrullus lanatus HOM05D003947 ORTHO05D004614 1.6e-59 233.4 201 62.7
Oeu002064.1 Olea europaea HOM05D003947 ORTHO05D004614 2.1e-59 233.0 192 65.6
Hund17479 Selenicereus undatus HOM05D003947 ORTHO05D004614 2.1e-59 233.0 200 61.0
Oeu051281.1 Olea europaea HOM05D003947 ORTHO05D004614 4.6e-59 231.9 190 62.6
arahy.Tifrunner.gnm1.ann1.8MR9WY Arachis hypogaea HOM05D003947 ORTHO05D004614 7.8e-59 231.1 211 58.8
MSTRG.1106 Avicennia marina HOM05D003947 ORTHO05D004614 7.8e-59 231.1 218 57.8
Oeu017623.1 Olea europaea HOM05D003947 ORTHO05D004614 1.3e-58 230.3 190 62.6
TAR381G1088 Trochodendron aralioides HOM05D003947 ORTHO05D004614 3.9e-58 228.8 186 64.0
AUR62034897 Chenopodium quinoa HOM05D003947 ORTHO05D004614 5.1e-58 228.4 186 62.4
DCAR_001161 Daucus carota HOM05D003947 ORTHO05D004614 5.1e-58 228.4 194 62.4
Ah.05g168170 Amaranthus hybridus HOM05D003947 ORTHO05D004614 3.3e-57 225.7 189 61.9
Migut.C00963 Erythranthe guttata HOM05D003947 ORTHO05D004614 5.6e-57 224.9 225 55.6
SalBow7G0665 Salvia bowleyana HOM05D003947 ORTHO05D004614 7.3e-57 224.6 189 63.5
Oeu022056.3 Olea europaea HOM05D003947 ORTHO05D004614 1.3e-56 223.8 191 61.8
TAR628G1588 Trochodendron aralioides HOM05D003947 ORTHO05D004614 2.8e-56 222.6 186 63.4
Lalb_Chr02g0141531 Lupinus albus HOM05D003947 ORTHO05D004614 4.8e-56 221.9 211 57.8
Duzib041G0104 Durio zibethinus HOM05D003947 ORTHO05D004614 8.1e-56 221.1 185 63.2
Migut.N03200 Erythranthe guttata HOM05D003947 ORTHO05D004614 5.3e-55 218.4 224 54.5
SalBow6G2315 Salvia bowleyana HOM05D003947 ORTHO05D004614 6.9e-55 218.0 194 60.3
Sed0016828 Sechium edule HOM05D003947 ORTHO05D004614 9.0e-55 217.6 186 61.3
Aa31LG7G6750 Aethionema arabicum HOM05D003947 ORTHO05D004614 1.2e-54 217.2 212 57.1
Carub.0001s2230 Capsella rubella HOM05D003947 ORTHO05D004614 1.5e-54 216.9 219 56.2
Glyma.16G163700 Glycine max HOM05D003947 ORTHO05D004614 3.4e-54 215.7 211 55.9
AL1G36340 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 2.2e-53 213.0 216 55.6
PSO675G7401 Papaver somniferum HOM05D003947 ORTHO05D004614 3.8e-53 212.2 213 57.7
Lj4P703T37 Lonicera japonica HOM05D003947 ORTHO05D004614 1.1e-52 210.7 191 64.4
PSO541G4258 Papaver somniferum HOM05D003947 ORTHO05D004614 1.1e-52 210.7 212 56.6
AT1G22790 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 7.1e-52 208.0 218 55.5
Aqoxy6G00408 Aquilegia oxysepala HOM05D003947 ORTHO05D004614 2.7e-51 206.1 186 58.6
Aa31LG4G8980 Aethionema arabicum HOM05D003947 ORTHO05D004614 4.6e-51 205.3 212 54.7
MBI04_g08942_MAGBIO Magnolia biondii HOM05D003947 ORTHO05D004614 6.0e-51 204.9 249 49.0
arahy.Tifrunner.gnm1.ann1.P1AQDG Arachis hypogaea HOM05D003947 ORTHO05D004614 3.0e-50 202.6 188 58.5
THA.LOC104806764 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 3.9e-50 202.2 211 53.1
HanXRQChr10g0278611 Helianthus annuus HOM05D003947 ORTHO05D004614 1.9e-49 199.9 215 56.3
THA.LOC104810422 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 1.9e-49 199.9 211 52.1
Rhsim06G0091600 Rhododendron simsii HOM05D003947 ORTHO05D004614 7.3e-49 198.0 210 61.0
HanXRQChr05g0162361 Helianthus annuus HOM05D003947 ORTHO05D004614 1.6e-48 196.8 217 52.5
CARHR023150 Cardamine hirsuta HOM05D003947 ORTHO05D004614 2.1e-48 196.4 229 53.7
Glyma.02G079300 Glycine max HOM05D003947 ORTHO05D004614 4.8e-48 195.3 210 53.3
HPP92_002802 Vanilla planifolia HOM05D003947 ORTHO05D004614 1.1e-47 194.1 212 52.4
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 6.9e-47 191.4 203 54.2
Lalb_Chr19g0130101 Lupinus albus HOM05D003947 ORTHO05D004614 2.0e-46 189.9 210 52.9
SGA_v2.0_scaffold108G30867 Striga asiatica HOM05D003947 ORTHO05D004614 3.4e-46 189.1 215 53.0
THA.LOC104813088 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 3.4e-46 189.1 213 49.8
Hund26679 Selenicereus undatus HOM05D003947 ORTHO05D004614 1.3e-45 187.2 187 56.1
SGA_v2.0_scaffold195G40776 Striga asiatica HOM05D003947 ORTHO05D004614 1.3e-45 187.2 197 53.3
PGR042G2534 Punica granatum HOM05D003947 ORTHO05D004614 6.4e-45 184.9 212 53.3
TPR.G17018 Trifolium pratense HOM05D003947 ORTHO05D004614 1.1e-44 184.1 173 55.5
Actinidia26828 Actinidia chinensis HOM05D003947 ORTHO05D004614 1.4e-44 183.7 172 59.3
Manes.16G051400 Manihot esculenta HOM05D003947 ORTHO05D004614 4.6e-43 178.7 152 60.5
Nn1g06005 Nelumbo nucifera HOM05D003947 ORTHO05D004614 4.6e-43 178.7 216 51.4
Carub.0001s3209 Capsella rubella HOM05D003947 ORTHO05D004614 6.0e-43 178.3 213 49.3
Lsat_1_v5_gn_1_5261 Lactuca sativa HOM05D003947 ORTHO05D004614 1.8e-42 176.8 221 48.0
Lj2g0016258 Lotus japonicus HOM05D003947 ORTHO05D004614 1.9e-41 173.3 210 50.0
Thhalv10008850m.g Eutrema salsugineum HOM05D003947 ORTHO05D004614 2.5e-41 172.9 211 47.9
Os01g0589700 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 7.4e-41 171.4 214 49.5
VMungo0464G0903 Vigna mungo HOM05D003947 ORTHO05D004614 9.6e-41 171.0 185 54.6
Aa31LG6G8230 Aethionema arabicum HOM05D003947 ORTHO05D004614 1.6e-40 170.2 210 47.1
CsaV3_6G005040 Cucumis sativus L. HOM05D003947 ORTHO05D004614 1.1e-39 167.5 214 48.6
unitig_32.g11256 Utricularia gibba HOM05D003947 ORTHO05D004614 1.1e-39 167.5 230 47.0
MELO3C008326.2 Cucumis melo HOM05D003947 ORTHO05D004614 1.8e-39 166.8 214 48.6
AL1G48450 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 1.5e-38 163.7 213 47.4
CARHR033390 Cardamine hirsuta HOM05D003947 ORTHO05D004614 2.6e-38 162.9 214 47.2
Sp1g29270 Schrenkiella parvula HOM05D003947 ORTHO05D004614 1.0e-37 161.0 211 47.9
BolC5t32518H Brassica oleracea HOM05D003947 ORTHO05D004614 1.7e-37 160.2 210 44.3
ClCG08G007400 Citrullus lanatus HOM05D003947 ORTHO05D004614 2.9e-37 159.5 217 47.0
Zm00001eb160770 Zea mays HOM05D003947 ORTHO05D004614 6.5e-37 158.3 220 45.5
BcaB07g33023 Brassica carinata HOM05D030501 ORTHO05D004614 9.3e-36 154.5 218 45.0
C06p12080 Brassica napus HOM05D003947 ORTHO05D004614 9.3e-36 154.5 210 43.8
BraA09t39684Z Brassica rapa HOM05D003947 ORTHO05D004614 1.2e-35 154.1 225 46.7
BcaC08g43824 Brassica carinata HOM05D003947 ORTHO05D004614 6.0e-35 151.8 210 43.3
BolC6t36345H Brassica oleracea HOM05D003947 ORTHO05D004614 6.0e-35 151.8 210 43.3
BcaNung06442 Brassica carinata HOM05D003947 ORTHO05D004614 1.3e-34 150.6 235 44.7
AT1G34010 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 2.3e-34 149.8 214 44.4
A05p24080 Brassica napus HOM05D003947 ORTHO05D004614 5.1e-34 148.7 210 43.3
Phvul.004G091200 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 6.7e-34 148.3 185 48.1
BcaC05g27781 Brassica carinata HOM05D003947 ORTHO05D004614 3.3e-33 146.0 210 44.8
A09p32460 Brassica napus HOM05D003947 ORTHO05D004614 7.4e-33 144.8 216 41.2
Zm00001eb357510 Zea mays HOM05D003947 ORTHO05D004614 9.0e-31 137.9 195 44.6
Lsat_1_v5_gn_6_101640 Lactuca sativa HOM05D003947 ORTHO05D004614 1.7e-29 133.7 227 40.5
SalBow7G0026 Salvia bowleyana HOM05D003947 ORTHO05D004614 1.4e-28 130.6 93 72.0
PSO700G0284 Papaver somniferum HOM05D003947 ORTHO05D004614 4.2e-28 129.0 217 42.9
BcaNung06106 Brassica carinata HOM05D003947 ORTHO05D004614 1.6e-27 127.1 174 46.6
BraA09t38788Z Brassica rapa HOM05D003947 ORTHO05D004614 1.6e-27 127.1 192 42.2
BolC5t30884H Brassica oleracea HOM05D003947 ORTHO05D004614 3.5e-27 125.9 231 41.6
C05p37750 Brassica napus HOM05D003947 ORTHO05D004614 6.1e-27 125.2 185 44.9
PSO170G0396 Papaver somniferum HOM05D003947 ORTHO05D004614 6.1e-27 125.2 218 42.2
A09p41960 Brassica napus HOM05D003947 ORTHO05D004614 7.9e-27 124.8 215 41.4
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 7.9e-27 124.8 185 42.7
C05p21890 Brassica napus HOM05D003947 ORTHO05D004614 1.8e-26 123.6 170 46.5
ATR1120G111 Amborella trichopoda HOM05D003947 ORTHO05D004614 3.9e-26 122.5 227 40.1
SHI09085 Sapria himalayana HOM05D003947 ORTHO05D004614 5.1e-26 122.1 184 43.5
Sed0006124 Sechium edule HOM05D003947 ORTHO05D004614 1.3e-24 117.5 168 45.8
Lsat_1_v5_gn_9_42121 Lactuca sativa HOM05D003947 ORTHO05D004614 1.6e-24 117.1 210 43.3
Sed0022469 Sechium edule HOM05D003947 ORTHO05D004614 1.4e-20 104.0 177 41.8
Os05g0591450 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 9.7e-17 91.3 91 58.2
Aqoxy5G02026 Aquilegia oxysepala HOM05D003947 ORTHO05D004614 4.2e-12 75.9 200 34.0
HPP92_002804 Vanilla planifolia HOM05D003947 ORTHO05D004614 1.2e-11 74.3 162 35.2
Cfa009557 Carpinus fangiana HOM05D007392 ORTHO05D009181 4.4e-09 65.9 146 33.6
Dinv13477 Davidia involucrata HOM05D007392 ORTHO05D009181 7.4e-09 65.1 145 33.8
Nn2g15869 Nelumbo nucifera HOM05D007392 ORTHO05D009181 2.2e-08 63.5 146 32.9
FAN11G3804 Fragaria x ananassa HOM05D007392 ORTHO05D009181 8.2e-08 61.6 151 28.5
FvH4_3g45780 Fragaria vesca HOM05D007392 ORTHO05D009181 1.4e-07 60.8 152 28.9
GSVIVG01025476001 Vitis vinifera HOM05D007392 ORTHO05D009181 2.4e-07 60.1 144 29.9
FAN16G0802 Fragaria x ananassa HOM05D007392 ORTHO05D009181 7.0e-07 58.5 153 27.5
Aqoxy2G00525 Aquilegia oxysepala HOM05D007392 ORTHO05D009181 9.1e-07 58.2 148 34.5
CANSAT11G0973 Cannabis sativa HOM05D007392 ORTHO05D009181 3.5e-06 56.2 148 29.1
ECA233G2404 Erigeron canadensis HOM05D007392 ORTHO05D009181 3.5e-06 56.2 147 32.7
Lsat_1_v5_gn_6_55560 Lactuca sativa HOM05D007392 ORTHO05D009181 3.5e-06 56.2 145 29.7
CiPaw.13G177600 Carya illinoinensis HOM05D007392 ORTHO05D009181 7.7e-06 55.1 150 29.3


User provided reference genes

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