Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022979 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D003639 0.0e+00 1425.2 791 100.0
CSS0049410 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D003639 0.0e+00 1387.9 791 98.0
CSS0017117 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D003639 0.0e+00 1385.5 791 98.0
CSS0024724 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D003639 0.0e+00 1285.0 791 88.7
CSS0004912 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D003639 0.0e+00 1256.1 791 83.6
CSS0041949 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D003639 6.7e-212 741.5 369 97.8
CSS0031977 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D112456 9.2e-145 518.5 407 85.3
CSS0043274 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D111155 9.2e-145 518.5 407 85.3
CSS0018317 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D110529 4.2e-137 493.0 407 83.0
CSS0031809 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D108891 9.0e-132 475.3 407 75.4
CSS0042992 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D111024 1.3e-130 471.5 407 79.1
CSS0026356 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D112650 7.1e-44 183.3 583 30.2
CSS0014082 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D112965 3.2e-36 157.9 596 30.4
Solyc05g010817.1 Solanum lycopersicum HOM05D008778 ORTHO05D003639 1.4e-20 105.9 247 28.7
Sopen00g002430 Solanum pennellii HOM05D008778 ORTHO05D003639 2.4e-20 105.1 230 30.0
Sopen00g007290 Solanum pennellii HOM05D008778 ORTHO05D003639 2.4e-20 105.1 230 30.0
Sopen09g003880 Solanum pennellii HOM05D008778 ORTHO05D003639 4.6e-19 100.9 232 30.2
Peaxi162Scf00820g00117 Petunia axillaris HOM05D008778 ORTHO05D003639 2.3e-18 98.6 230 27.0
Peaxi162Scf00820g00119 Petunia axillaris HOM05D008778 ORTHO05D003639 1.9e-17 95.5 234 28.2
Nitab4.5_0001698g0060 Nicotiana tabacum HOM05D008778 ORTHO05D003639 2.1e-16 92.0 235 28.5
FvH4_3g26742 Fragaria vesca HOM05D016656 ORTHO05D003639 3.6e-16 91.3 232 28.9
Nitab4.5_0000663g0030 Nicotiana tabacum HOM05D008778 ORTHO05D003639 6.2e-16 90.5 234 29.1
CSS0044889 Camellia sinensis var. sinensis HOM05D008778 ORTHO05D003639 1.4e-15 89.4 235 32.3
Peaxi162Scf00169g01112 Petunia axillaris HOM05D008778 ORTHO05D003639 9.0e-15 86.7 236 28.8
Nitab4.5_0000663g0010 Nicotiana tabacum HOM05D008778 ORTHO05D003639 1.5e-14 85.9 255 27.8
QL01p013702 Quercus lobata HOM05D009149 ORTHO05D003639 1.5e-14 85.9 237 27.0
Nitab4.5_0001698g0030 Nicotiana tabacum HOM05D008778 ORTHO05D003639 2.6e-14 85.1 350 24.6
RcHm_v2.0_Chr5g0049171 Rosa chinensis HOM05D016656 ORTHO05D003639 2.6e-14 85.1 231 26.4
Nitab4.5_0001698g0040 Nicotiana tabacum HOM05D008778 ORTHO05D003639 5.8e-14 84.0 237 28.3
FvH4_5g16044 Fragaria vesca HOM05D060084 ORTHO05D046536 1.4e-12 79.3 243 25.5
PGSC0003DMG400002681 Solanum tuberosum HOM05D008778 ORTHO05D003639 5.5e-12 77.4 387 23.3
Sabra13G0012400 Salix brachista HOM05D020966 ORTHO05D010251 6.0e-11 73.9 245 26.9
RcHm_v2.0_Chr2g0138191 Rosa chinensis HOM05D008702 ORTHO05D003639 7.9e-11 73.6 245 27.8
RcHm_v2.0_Chr1g0321631 Rosa chinensis HOM05D008702 ORTHO05D003639 1.0e-10 73.2 245 26.9
Sopen09g003890 Solanum pennellii HOM05D000006 ORTHO05D000001 1.0e-10 73.2 346 24.3
Cc00_g19240 Coffea canephora HOM05D009149 ORTHO05D003639 3.0e-10 71.6 224 26.8
FAN25G0588 Fragaria x ananassa HOM05D016656 ORTHO05D003639 5.1e-10 70.9 177 31.1
RcHm_v2.0_Chr2g0142701 Rosa chinensis HOM05D008702 ORTHO05D003639 5.1e-10 70.9 245 27.8
RcHm_v2.0_Chr2g0121071 Rosa chinensis HOM05D008702 ORTHO05D003639 1.9e-09 68.9 355 25.1
RcHm_v2.0_Chr2g0116581 Rosa chinensis HOM05D008702 ORTHO05D003639 1.3e-08 66.2 357 24.9
RcHm_v2.0_Chr2g0152981 Rosa chinensis HOM05D008702 ORTHO05D003639 1.3e-08 66.2 353 24.4
Nitab4.5_0007634g0020 Nicotiana tabacum HOM05D008778 ORTHO05D003639 3.7e-08 64.7 167 28.1
Nitab4.5_0006587g0010 Nicotiana tabacum HOM05D008778 ORTHO05D003639 1.4e-07 62.8 137 24.1
RcHm_v2.0_Chr1g0320431 Rosa chinensis HOM05D008702 ORTHO05D003639 1.4e-07 62.8 220 25.9
RcHm_v2.0_Chr7g0194611 Rosa chinensis HOM05D009149 ORTHO05D003639 1.8e-07 62.4 245 25.7
FAN19G0432 Fragaria x ananassa HOM05D016497 ORTHO05D019154 1.2e-06 59.7 240 25.8
Peaxi162Scf00820g00045 Petunia axillaris HOM05D008778 ORTHO05D003639 2.0e-06 58.9 237 26.6
CSS0044261 Camellia sinensis var. sinensis HOM05D013673 ORTHO05D015012 4.5e-06 57.8 217 26.3
CSS0023448 Camellia sinensis var. sinensis HOM05D013673 ORTHO05D015012 7.6e-06 57.0 159 30.8
FvH4_4g18552 Fragaria vesca HOM05D009149 ORTHO05D003639 7.6e-06 57.0 186 28.5
RcHm_v2.0_Chr3g0493631 Rosa chinensis HOM05D009149 ORTHO05D003639 1.0e-05 56.6 174 26.4


User provided reference genes

Program Settings