Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022976 Camellia sinensis var. sinensis HOM05D006674 ORTHO05D007954 7.4e-54 214.2 157 100.0
CSS0023224 Camellia sinensis var. sinensis HOM05D006674 ORTHO05D007954 9.4e-49 197.2 100 98.0
Dinv28183 Davidia involucrata HOM05D006674 ORTHO05D007954 1.4e-41 173.3 100 85.0
Rhsim08G0019400 Rhododendron simsii HOM05D006674 ORTHO05D007954 5.5e-41 171.4 100 85.0
Actinidia28801 Actinidia chinensis HOM05D006674 ORTHO05D007954 7.2e-41 171.0 99 83.8
GSVIVG01030703001 Vitis vinifera HOM05D006674 ORTHO05D007954 5.2e-39 164.9 100 80.0
vmacro18526 Vaccinium macrocarpon HOM05D006674 ORTHO05D007954 1.5e-38 163.3 99 80.8
Gohir.D07G078400 Gossypium hirsutum HOM05D006674 ORTHO05D007954 3.3e-38 162.2 98 78.6
Gorai.001G082800 Gossypium raimondii HOM05D006674 ORTHO05D007954 3.3e-38 162.2 98 78.6
QL02p059277 Quercus lobata HOM05D006674 ORTHO05D007954 4.4e-38 161.8 99 76.8
Ciclev10011395m.g Citrus clementina HOM05D006674 ORTHO05D007954 5.7e-38 161.4 100 78.0
Duzib133G1445 Durio zibethinus HOM05D006674 ORTHO05D007954 5.7e-38 161.4 99 77.8
Gohir.A07G073700 Gossypium hirsutum HOM05D006674 ORTHO05D007954 9.7e-38 160.6 99 76.8
Thecc.04G053800 Theobroma cacao HOM05D006674 ORTHO05D007954 1.8e-36 156.4 99 81.8
Atru.chr1.1984 Acer truncatum HOM05D006674 ORTHO05D007954 4.1e-36 155.2 100 76.0
DCAR_016695 Daucus carota HOM05D006674 ORTHO05D007954 1.2e-35 153.7 100 72.0
CiPaw.03G073400 Carya illinoinensis HOM05D006674 ORTHO05D007954 1.6e-35 153.3 99 74.7
TPR.G24904 Trifolium pratense HOM05D006674 ORTHO05D007954 2.6e-35 152.5 97 77.3
Manes.01G119600 Manihot esculenta HOM05D006674 ORTHO05D007954 3.5e-35 152.1 95 75.8
MELO3C031718.2 Cucumis melo HOM05D006674 ORTHO05D007954 4.5e-35 151.8 100 71.0
CsaV3_3G017830 Cucumis sativus L. HOM05D006674 ORTHO05D007954 4.5e-35 151.8 100 71.0
Eucgr.F02873 Eucalyptus grandis HOM05D006674 ORTHO05D007954 4.5e-35 151.8 100 72.0
Nn4g24371 Nelumbo nucifera HOM05D006674 ORTHO05D007954 4.5e-35 151.8 100 76.0
Solyc11g011390.3 Solanum lycopersicum HOM05D006674 ORTHO05D007954 1.7e-34 149.8 99 74.7
Cc07_g13280 Coffea canephora HOM05D006674 ORTHO05D007954 2.9e-34 149.1 96 77.1
Sed0023155 Sechium edule HOM05D006674 ORTHO05D007954 3.8e-34 148.7 99 72.7
ClCG05G010660 Citrullus lanatus HOM05D006674 ORTHO05D007954 6.5e-34 147.9 103 70.9
HanXRQChr09g0259811 Helianthus annuus HOM05D006674 ORTHO05D007954 8.5e-34 147.5 100 71.0
Glyma.11G215400 Glycine max HOM05D006674 ORTHO05D007954 2.5e-33 146.0 97 75.3
TWI77G1007 Tripterygium wilfordii HOM05D006674 ORTHO05D007954 3.2e-33 145.6 98 73.5
Glyma.18G041200 Glycine max HOM05D006674 ORTHO05D007954 4.2e-33 145.2 97 74.2
Lj6g0000042 Lotus japonicus HOM05D006674 ORTHO05D007954 7.2e-33 144.4 95 73.7
Medtr3g065220 Medicago truncatula HOM05D006674 ORTHO05D007954 9.4e-33 144.1 98 71.4
Phvul.001G229300 Phaseolus vulgaris HOM05D006674 ORTHO05D007954 9.4e-33 144.1 97 74.2
THA.LOC104805245 Tarenaya hassleriana HOM05D006674 ORTHO05D007954 1.6e-32 143.3 98 69.4
AT5G37590 Arabidopsis thaliana HOM05D006674 ORTHO05D007954 2.7e-32 142.5 100 70.0
MD17G1268600 Malus domestica HOM05D006674 ORTHO05D007954 1.4e-31 140.2 113 66.4
Sc11g0004590 Simmondsia chinensis HOM05D006674 ORTHO05D007954 1.4e-31 140.2 98 64.3
Lalb_Chr15g0084971 Lupinus albus HOM05D006674 ORTHO05D007954 1.8e-31 139.8 97 70.1
Aqoxy5G02269 Aquilegia oxysepala HOM05D006674 ORTHO05D007954 1.5e-30 136.7 99 66.7
Aa31LG9G17490 Aethionema arabicum HOM05D006674 ORTHO05D007954 2.0e-30 136.3 100 70.0
AL7G46330 Arabidopsis lyrata HOM05D006674 ORTHO05D007954 2.6e-30 136.0 98 71.4
Carub.0007s3275 Capsella rubella HOM05D006674 ORTHO05D007954 2.6e-30 136.0 85 77.6
Psat5g120320 Pisum sativum HOM05D006674 ORTHO05D007954 2.6e-30 136.0 96 69.8
Sp7g04510 Schrenkiella parvula HOM05D006674 ORTHO05D007954 2.6e-30 136.0 89 75.3
BcaC02g09589 Brassica carinata HOM05D006674 ORTHO05D007954 4.4e-30 135.2 100 69.0
C04p44470 Brassica napus HOM05D006674 ORTHO05D007954 4.4e-30 135.2 100 69.0
BolC4t26017H Brassica oleracea HOM05D006674 ORTHO05D007954 4.4e-30 135.2 100 69.0
BcaB06g27104 Brassica carinata HOM05D006674 ORTHO05D007954 5.7e-30 134.8 100 69.0
A04p10750 Brassica napus HOM05D006674 ORTHO05D007954 7.5e-30 134.4 100 68.0
BraA04t16739Z Brassica rapa HOM05D006674 ORTHO05D007954 7.5e-30 134.4 100 68.0
Thhalv10027712m.g Eutrema salsugineum HOM05D006674 ORTHO05D007954 1.3e-29 133.7 84 78.6
CDE06G1904 Ceratophyllum demersum HOM05D006674 ORTHO05D007954 2.2e-29 132.9 99 62.6
PSO017G4728 Papaver somniferum HOM05D006674 ORTHO05D007954 2.2e-29 132.9 99 68.7
Migut.H02229 Erythranthe guttata HOM05D006674 ORTHO05D007954 2.8e-29 132.5 98 70.4
EL10Ac2g03314 Beta vulgaris HOM05D006674 ORTHO05D007954 3.7e-29 132.1 95 66.3
PSO478G0741 Papaver somniferum HOM05D006674 ORTHO05D007954 3.7e-29 132.1 99 67.7
Potri.004G085200 Populus trichocarpa HOM05D006674 ORTHO05D007954 3.7e-29 132.1 93 66.7
Sopen11g006190 Solanum pennellii HOM05D006674 ORTHO05D007954 3.7e-29 132.1 134 55.2
VMungo1383G3322 Vigna mungo HOM05D006674 ORTHO05D007954 4.8e-29 131.7 93 69.9
ECA236G3280 Erigeron canadensis HOM05D006674 ORTHO05D007954 6.3e-29 131.3 80 75.0
ATR0753G105 Amborella trichopoda HOM05D006674 ORTHO05D007954 8.2e-29 131.0 101 64.4
RcHm_v2.0_Chr3g0491391 Rosa chinensis HOM05D006674 ORTHO05D007954 3.1e-28 129.0 107 62.6
FvH4_1g30190 Fragaria vesca HOM05D006674 ORTHO05D007954 4.1e-28 128.6 100 67.0
arahy.Tifrunner.gnm1.ann1.M54V7M Arachis hypogaea HOM05D006674 ORTHO05D007954 2.2e-26 122.9 110 57.3
Peaxi162Scf00562g00218 Petunia axillaris HOM05D006674 ORTHO05D007954 3.8e-26 122.1 100 66.0
Lsat_1_v5_gn_1_78040 Lactuca sativa HOM05D006674 ORTHO05D007954 6.5e-26 121.3 100 66.0
SGA_v2.0_scaffold108G30962 Striga asiatica HOM05D006674 ORTHO05D007954 1.1e-25 120.6 106 59.4
Sabra04G0056300 Salix brachista HOM05D006674 ORTHO05D007954 4.2e-25 118.6 95 61.1
unitig_27.g24984 Utricularia gibba HOM05D006674 ORTHO05D007954 1.2e-24 117.1 102 60.8
AUR62042219 Chenopodium quinoa HOM05D006674 ORTHO05D007954 2.1e-24 116.3 87 64.4
Zm00001eb221050 Zea mays HOM05D006674 ORTHO05D007954 1.0e-23 114.0 98 59.2
Pp3c16_20720 Physcomitrium patens HOM05D006674 ORTHO05D007954 7.5e-22 107.8 100 50.0
FAN26G0259 Fragaria x ananassa HOM05D006674 ORTHO05D007954 4.8e-21 105.1 78 71.8
FAN26G0614 Fragaria x ananassa HOM05D006674 ORTHO05D007954 4.8e-21 105.1 78 71.8
Mapoly0177s0018 Marchantia polymorpha HOM05D006674 ORTHO05D007954 8.3e-21 104.4 106 51.9
COL.COLO4_13419 Corchorus olitorius HOM05D006674 ORTHO05D007954 1.2e-19 100.5 100 55.0
CAN.G222.56 Capsicum annuum HOM05D006674 ORTHO05D007954 2.7e-19 99.4 100 56.0
CBR_g12189 Chara braunii HOM05D000019 ORTHO05D000002 5.9e-19 98.2 95 50.5
Nitab4.5_0001650g0150 Nicotiana tabacum HOM05D006674 ORTHO05D007954 5.0e-18 95.1 100 56.0
Nitab4.5_0009806g0010 Nicotiana tabacum HOM05D006674 ORTHO05D007954 5.0e-18 95.1 100 56.0
PGSC0003DMG400013236 Solanum tuberosum HOM05D006674 ORTHO05D007954 1.2e-16 90.5 47 91.5
SMO170G0006 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 4.7e-16 88.6 70 54.3
arahy.Tifrunner.gnm1.ann1.V27PH4 Arachis hypogaea HOM05D006674 ORTHO05D007954 2.3e-15 86.3 99 51.5
Prupe.3G166300 Prunus persica HOM05D006674 ORTHO05D007954 2.3e-15 86.3 49 85.7
Haze_14280 Corylus avellana HOM05D006674 ORTHO05D007954 3.4e-14 82.4 47 85.1
MCO08G049 Micromonas commoda HOM05D006674 ORTHO05D007954 4.4e-14 82.0 68 58.8
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 9.8e-14 80.9 97 46.4
PGR004G1202 Punica granatum HOM05D006674 ORTHO05D007954 1.3e-13 80.5 102 42.2
HPP92_002281 Vanilla planifolia HOM05D006674 ORTHO05D007954 3.1e-12 75.9 46 73.9
arahy.Tifrunner.gnm1.ann1.UE2S4S Arachis hypogaea HOM05D006674 ORTHO05D007954 1.6e-11 73.6 99 44.4
Os04g0278200 Oryza sativa ssp. japonica HOM05D006674 ORTHO05D007954 4.5e-11 72.0 48 70.8


User provided reference genes

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