Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022955 Camellia sinensis var. sinensis HOM05D002044 ORTHO05D005337 5.2e-88 327.8 176 100.0
CSS0012634 Camellia sinensis var. sinensis HOM05D002044 ORTHO05D005337 1.5e-63 246.5 214 70.6
CSS0022335 Camellia sinensis var. sinensis HOM05D002044 ORTHO05D005337 1.5e-63 246.5 212 70.3
CSS0042304 Camellia sinensis var. sinensis HOM05D002044 ORTHO05D005337 2.7e-60 235.7 200 72.0
Hma1.2p1_1518F.1_g288530 Hydrangea macrophylla HOM05D002044 ORTHO05D005337 7.3e-58 227.6 200 68.0
Actinidia04375 Actinidia chinensis HOM05D002044 ORTHO05D005337 1.6e-57 226.5 212 65.6
Actinidia05503 Actinidia chinensis HOM05D002044 ORTHO05D005337 2.1e-57 226.1 212 65.6
CSS0030744 Camellia sinensis var. sinensis HOM05D002044 ORTHO05D005337 2.1e-57 226.1 209 68.4
Hma1.2p1_0375F.1_g138885 Hydrangea macrophylla HOM05D002044 ORTHO05D005337 4.7e-57 224.9 212 64.2
vmacro19458 Vaccinium macrocarpon HOM05D002044 ORTHO05D005337 6.8e-56 221.1 213 65.7
Dinv16042 Davidia involucrata HOM05D002044 ORTHO05D005337 1.2e-55 220.3 213 63.4
Sed0022817 Sechium edule HOM05D002044 ORTHO05D005337 1.2e-55 220.3 212 63.2
CsaV3_2G035050 Cucumis sativus L. HOM05D002044 ORTHO05D005337 1.5e-55 219.9 213 63.4
Manes.07G065600 Manihot esculenta HOM05D002044 ORTHO05D005337 2.0e-55 219.5 213 63.4
Potri.001G297900 Populus trichocarpa HOM05D002044 ORTHO05D005337 3.4e-55 218.8 212 63.2
Rhsim05G0089300 Rhododendron simsii HOM05D002044 ORTHO05D005337 3.4e-55 218.8 212 64.2
Dinv42209 Davidia involucrata HOM05D002044 ORTHO05D005337 4.4e-55 218.4 213 62.9
Rhsim10G0161800 Rhododendron simsii HOM05D002044 ORTHO05D005337 4.4e-55 218.4 213 65.3
Duzib248G0129 Durio zibethinus HOM05D002044 ORTHO05D005337 5.7e-55 218.0 213 63.4
GSVIVG01037888001 Vitis vinifera HOM05D002044 ORTHO05D005337 5.7e-55 218.0 212 62.7
PGR042G0312 Punica granatum HOM05D002044 ORTHO05D005337 7.5e-55 217.6 212 62.7
Thecc.02G112200 Theobroma cacao HOM05D002044 ORTHO05D005337 9.8e-55 217.2 213 62.9
CiPaw.05G013900 Carya illinoinensis HOM05D002044 ORTHO05D005337 2.9e-54 215.7 212 60.8
Lj5A216T105 Lonicera japonica HOM05D002044 ORTHO05D005337 1.1e-53 213.8 213 63.4
Sabra09G0071300 Salix brachista HOM05D002044 ORTHO05D005337 1.1e-53 213.8 213 62.4
Sed0009404 Sechium edule HOM05D002044 ORTHO05D005337 1.1e-53 213.8 213 62.4
Sc08g0001210 Simmondsia chinensis HOM05D002044 ORTHO05D005337 1.1e-53 213.8 212 60.4
TAR625G0358 Trochodendron aralioides HOM05D002044 ORTHO05D005337 1.4e-53 213.4 213 62.4
DCAR_029099 Daucus carota HOM05D002044 ORTHO05D005337 1.8e-53 213.0 212 61.3
MSTRG.20199 Avicennia marina HOM05D002044 ORTHO05D005337 2.4e-53 212.6 212 61.3
Cfa004613 Carpinus fangiana HOM05D002044 ORTHO05D005337 2.4e-53 212.6 213 60.6
Duzib132G1163 Durio zibethinus HOM05D002044 ORTHO05D005337 2.4e-53 212.6 213 61.5
Potri.009G092700 Populus trichocarpa HOM05D002044 ORTHO05D005337 2.4e-53 212.6 213 62.9
Haze_10209 Corylus avellana HOM05D002044 ORTHO05D005337 3.2e-53 212.2 213 60.6
QL11p032343 Quercus lobata HOM05D002044 ORTHO05D005337 9.2e-53 210.7 212 59.9
Glyma.10G259900 Glycine max HOM05D002044 ORTHO05D005337 1.2e-52 210.3 213 61.0
Cpa.g.sc292.6 Carica papaya HOM05D002044 ORTHO05D005337 1.6e-52 209.9 209 62.7
Glyma.20G131000 Glycine max HOM05D002044 ORTHO05D005337 1.6e-52 209.9 213 61.0
Prupe.8G138300 Prunus persica HOM05D002044 ORTHO05D005337 2.7e-52 209.1 212 60.8
SGA_v2.0_scaffold225G42999 Striga asiatica HOM05D002044 ORTHO05D005337 2.7e-52 209.1 212 59.4
ECA234G0629 Erigeron canadensis HOM05D002044 ORTHO05D005337 3.5e-52 208.8 209 60.8
Hund06300 Selenicereus undatus HOM05D002044 ORTHO05D005337 5.9e-52 208.0 212 58.5
FAN24G0835 Fragaria x ananassa HOM05D002044 ORTHO05D005337 1.0e-51 207.2 212 61.3
Nitab4.5_0002441g0030 Nicotiana tabacum HOM05D002044 ORTHO05D005337 1.3e-51 206.8 212 59.4
FAN15G0361 Fragaria x ananassa HOM05D002044 ORTHO05D005337 1.7e-51 206.5 212 61.3
RcHm_v2.0_Chr6g0254341 Rosa chinensis HOM05D002044 ORTHO05D005337 1.7e-51 206.5 212 61.3
Sabra16G0186700 Salix brachista HOM05D002044 ORTHO05D005337 2.3e-51 206.1 240 55.0
Nitab4.5_0003534g0050 Nicotiana tabacum HOM05D002044 ORTHO05D005337 3.0e-51 205.7 212 59.4
MBI14_g09419_MAGBIO Magnolia biondii HOM05D002044 ORTHO05D005337 3.9e-51 205.3 212 58.5
FvH4_2g04710 Fragaria vesca HOM05D002044 ORTHO05D005337 6.6e-51 204.5 212 60.8
MD05G1093600 Malus domestica HOM05D002044 ORTHO05D005337 6.6e-51 204.5 212 59.4
arahy.Tifrunner.gnm1.ann1.E7DDSD Arachis hypogaea HOM05D002044 ORTHO05D005337 8.6e-51 204.1 213 60.1
arahy.Tifrunner.gnm1.ann1.JSZB3T Arachis hypogaea HOM05D002044 ORTHO05D005337 8.6e-51 204.1 213 60.1
CAN.G1156.17 Capsicum annuum HOM05D002044 ORTHO05D005337 8.6e-51 204.1 209 61.2
EL10Ac9g22245 Beta vulgaris HOM05D002044 ORTHO05D005337 1.1e-50 203.8 193 61.7
COL.COLO4_32562 Corchorus olitorius HOM05D002044 ORTHO05D005337 1.1e-50 203.8 210 60.5
CSS0041438 Camellia sinensis var. sinensis HOM05D002044 ORTHO05D005337 1.9e-50 203.0 212 59.9
Gohir.A03G185000 Gossypium hirsutum HOM05D002044 ORTHO05D005337 2.5e-50 202.6 212 60.4
Gohir.D02G206500 Gossypium hirsutum HOM05D002044 ORTHO05D005337 2.5e-50 202.6 212 60.4
Aqoxy6G02802 Aquilegia oxysepala HOM05D002044 ORTHO05D005337 3.3e-50 202.2 209 57.9
HanXRQChr13g0407801 Helianthus annuus HOM05D002044 ORTHO05D005337 3.3e-50 202.2 208 60.1
Cc02_g19500 Coffea canephora HOM05D002044 ORTHO05D005337 4.3e-50 201.8 213 58.7
Migut.B00409 Erythranthe guttata HOM05D002044 ORTHO05D005337 4.3e-50 201.8 212 56.1
Lalb_Chr06g0165321 Lupinus albus HOM05D002044 ORTHO05D005337 4.3e-50 201.8 213 59.2
CSS0033320 Camellia sinensis var. sinensis HOM05D002044 ORTHO05D005337 5.6e-50 201.4 212 59.4
Eucgr.G01295 Eucalyptus grandis HOM05D002044 ORTHO05D005337 5.6e-50 201.4 212 59.0
Phvul.007G042300 Phaseolus vulgaris HOM05D002044 ORTHO05D005337 9.5e-50 200.7 213 58.2
Gorai.005G233900 Gossypium raimondii HOM05D002044 ORTHO05D005337 1.2e-49 200.3 212 59.9
Atru.chr12.1082 Acer truncatum HOM05D002044 ORTHO05D005337 1.6e-49 199.9 212 57.1
Ah.01g018420 Amaranthus hybridus HOM05D002044 ORTHO05D005337 1.6e-49 199.9 212 58.0
TPR.G34538 Trifolium pratense HOM05D002044 ORTHO05D005337 1.6e-49 199.9 213 57.7
Psat6g216480 Pisum sativum HOM05D002044 ORTHO05D005337 2.1e-49 199.5 213 56.3
FAN27G0061 Fragaria x ananassa HOM05D002044 ORTHO05D005337 2.8e-49 199.1 212 59.9
Ciclev10029279m.g Citrus clementina HOM05D002044 ORTHO05D005337 3.6e-49 198.7 213 59.2
HanXRQChr10g0288701 Helianthus annuus HOM05D002044 ORTHO05D005337 4.7e-49 198.4 212 59.4
THA.LOC104819545 Tarenaya hassleriana HOM05D002044 ORTHO05D005337 6.2e-49 198.0 208 58.2
arahy.Tifrunner.gnm1.ann1.DB7NWR Arachis hypogaea HOM05D002044 ORTHO05D005337 8.0e-49 197.6 234 55.1
Lj5g0028080 Lotus japonicus HOM05D002044 ORTHO05D005337 8.0e-49 197.6 213 56.8
Lalb_Chr21g0308221 Lupinus albus HOM05D002044 ORTHO05D005337 8.0e-49 197.6 213 57.3
VMungo0720G1876 Vigna mungo HOM05D002044 ORTHO05D005337 8.0e-49 197.6 213 57.3
CDE04G1739 Ceratophyllum demersum HOM05D002044 ORTHO05D005337 1.1e-48 197.2 212 58.0
Medtr1g106955 Medicago truncatula HOM05D002044 ORTHO05D005337 1.1e-48 197.2 213 56.8
Sopen11g007470 Solanum pennellii HOM05D002044 ORTHO05D005337 1.1e-48 197.2 213 59.2
PGSC0003DMG400013301 Solanum tuberosum HOM05D002044 ORTHO05D005337 1.1e-48 197.2 215 59.1
Solyc11g012730.3 Solanum lycopersicum HOM05D002044 ORTHO05D005337 1.4e-48 196.8 213 58.7
ClCG02G008580 Citrullus lanatus HOM05D002044 ORTHO05D005337 1.8e-48 196.4 219 57.5
Lsat_1_v5_gn_3_25161 Lactuca sativa HOM05D002044 ORTHO05D005337 2.3e-48 196.1 209 57.9
Peaxi162Scf00925g00012 Petunia axillaris HOM05D002044 ORTHO05D005337 4.0e-48 195.3 202 60.4
TPR.G27108 Trifolium pratense HOM05D002044 ORTHO05D005337 6.8e-48 194.5 213 55.9
AUR62010336 Chenopodium quinoa HOM05D002044 ORTHO05D005337 1.5e-47 193.4 202 57.4
Nitab4.5_0010237g0020 Nicotiana tabacum HOM05D002044 ORTHO05D005337 2.6e-47 192.6 219 55.7
Nn5g30477 Nelumbo nucifera HOM05D002044 ORTHO05D005337 3.4e-47 192.2 184 60.9
Ca_11053_v3 Cicer arietinum L. HOM05D002044 ORTHO05D005337 4.4e-47 191.8 207 57.5
Oeu011152.1 Olea europaea HOM05D002044 ORTHO05D005337 4.4e-47 191.8 199 60.3
SalBow6G3741 Salvia bowleyana HOM05D002044 ORTHO05D005337 4.4e-47 191.8 212 55.7
SalBow6G6092 Salvia bowleyana HOM05D002044 ORTHO05D005337 4.4e-47 191.8 212 55.7
ATR0753G080 Amborella trichopoda HOM05D002044 ORTHO05D005337 5.8e-47 191.4 208 57.2
PSO541G3790 Papaver somniferum HOM05D002044 ORTHO05D005337 7.5e-47 191.0 208 57.2
PSO675G8768 Papaver somniferum HOM05D002044 ORTHO05D005337 7.5e-47 191.0 208 57.2
PSO017G0285 Papaver somniferum HOM05D002044 ORTHO05D005337 9.8e-47 190.7 208 56.7
AL5G14080 Arabidopsis lyrata HOM05D002044 ORTHO05D005337 1.3e-46 190.3 203 57.1
Carub.0003s3323 Capsella rubella HOM05D002044 ORTHO05D005337 1.7e-46 189.9 203 56.7
TWI79G1456 Tripterygium wilfordii HOM05D002044 ORTHO05D005337 2.2e-46 189.5 209 55.5
Thhalv10026241m.g Eutrema salsugineum HOM05D002044 ORTHO05D005337 2.9e-46 189.1 208 56.2
Sp7g32070 Schrenkiella parvula HOM05D002044 ORTHO05D005337 2.9e-46 189.1 208 56.2
CARHR242500 Cardamine hirsuta HOM05D002044 ORTHO05D005337 3.7e-46 188.7 209 57.4
AT3G25580 Arabidopsis thaliana HOM05D002044 ORTHO05D005337 6.4e-46 188.0 203 56.7
TWI75G1328 Tripterygium wilfordii HOM05D002044 ORTHO05D005337 1.1e-45 187.2 213 55.9
Aa31LG2G20360 Aethionema arabicum HOM05D002044 ORTHO05D005337 1.4e-45 186.8 209 55.5
AT2G18990 Arabidopsis thaliana HOM05D002044 ORTHO05D005337 1.9e-45 186.4 204 56.9
AL3G52920 Arabidopsis lyrata HOM05D002044 ORTHO05D005337 3.2e-45 185.7 204 56.9
BcaNung04161 Brassica carinata HOM05D002044 ORTHO05D005337 3.2e-45 185.7 207 55.6
Carub.0005s0334 Capsella rubella HOM05D002044 ORTHO05D005337 3.2e-45 185.7 203 55.2
CDE02G0142 Ceratophyllum demersum HOM05D002044 ORTHO05D005337 3.2e-45 185.7 206 55.3
Sp3g32230 Schrenkiella parvula HOM05D002044 ORTHO05D005337 4.1e-45 185.3 208 55.3
unitig_0.g881 Utricularia gibba HOM05D002044 ORTHO05D005337 4.1e-45 185.3 205 54.6
Lsat_1_v5_gn_6_99560 Lactuca sativa HOM05D000288 ORTHO05D005337 5.4e-45 184.9 207 57.0
C01p04500 Brassica napus HOM05D002044 ORTHO05D005337 1.2e-44 183.7 208 54.8
BolC1t00436H Brassica oleracea HOM05D002044 ORTHO05D005337 1.2e-44 183.7 208 54.8
Thhalv10022846m.g Eutrema salsugineum HOM05D002044 ORTHO05D005337 1.2e-44 183.7 208 55.3
A01p04130 Brassica napus HOM05D002044 ORTHO05D005337 2.0e-44 183.0 208 54.3
BraA01t00402Z Brassica rapa HOM05D002044 ORTHO05D005337 2.0e-44 183.0 208 54.3
FAN20G2696 Fragaria x ananassa HOM05D002044 ORTHO05D005337 2.7e-44 182.6 153 68.0
HPP92_024630 Vanilla planifolia HOM05D002044 ORTHO05D005337 3.5e-44 182.2 213 53.5
Os08g0250700 Oryza sativa ssp. japonica HOM05D002044 ORTHO05D005337 6.8e-40 167.9 212 50.0
Glyma.15G219600 Glycine max HOM05D002044 ORTHO05D005337 5.8e-39 164.9 149 62.4
Zm00001eb178370 Zea mays HOM05D002044 ORTHO05D005337 1.3e-38 163.7 209 48.3
MBI14_g22154_MAGBIO Magnolia biondii HOM05D002044 ORTHO05D005337 1.6e-36 156.8 157 58.6
Mapoly0048s0065 Marchantia polymorpha HOM05D002044 ORTHO05D005337 4.9e-30 135.2 202 44.1
CBR_g41441 Chara braunii HOM05D002044 ORTHO05D005337 4.1e-29 132.1 156 50.0
CSS0000930 Camellia sinensis var. sinensis HOM05D002044 ORTHO05D005337 2.1e-28 129.8 82 84.1
Pp3c8_16300 Physcomitrium patens HOM05D002044 ORTHO05D005337 2.7e-28 129.4 203 41.4
Rhsim12G0107800 Rhododendron simsii HOM05D002044 ORTHO05D005337 3.9e-27 125.6 113 69.9
Sc08g0001240 Simmondsia chinensis HOM05D002044 ORTHO05D005337 1.1e-26 124.0 115 60.9
Oeu013764.1 Olea europaea HOM05D002044 ORTHO05D005337 7.3e-26 121.3 123 61.0
MELO3C019253.2 Cucumis melo HOM05D002044 ORTHO05D005337 3.6e-25 119.0 112 67.0
SMO367G0382 Selaginella moellendorffii HOM05D002044 ORTHO05D005337 4.7e-25 118.6 162 45.7
SGA_v2.0_scaffold32G13022 Striga asiatica HOM05D002044 ORTHO05D005337 8.1e-25 117.9 229 41.9
TAR381G0640 Trochodendron aralioides HOM05D002044 ORTHO05D005337 1.4e-24 117.1 128 53.9
Nn1g04647 Nelumbo nucifera HOM05D002044 ORTHO05D005337 4.0e-24 115.5 82 72.0
Cre01.g037800 Chlamydomonas reinhardtii HOM05D002044 ORTHO05D005337 6.9e-24 114.8 147 43.5
Aa31sc18G120 Aethionema arabicum HOM05D002044 ORTHO05D005337 2.6e-23 112.8 107 63.6
PRCOL_00005050 Prasinoderma coloniale HOM05D002044 ORTHO05D005337 2.4e-21 106.3 147 38.1
C07p60480 Brassica napus HOM05D002044 ORTHO05D005337 3.5e-20 102.4 108 59.3
BolC7t46480H Brassica oleracea HOM05D002044 ORTHO05D005337 3.5e-20 102.4 108 59.3
SEGI_15660 Sequoiadendron giganteum HOM05D002044 ORTHO05D005337 4.6e-20 102.1 153 45.8
MCO11G837 Micromonas commoda HOM05D002044 ORTHO05D005337 6.0e-20 101.7 145 39.3
BcaNung04990 Brassica carinata HOM05D002044 ORTHO05D005337 3.9e-19 99.0 103 60.2
CAN.G587.70 Capsicum annuum HOM05D002044 ORTHO05D005337 1.5e-18 97.1 140 48.6
RcHm_v2.0_Chr6g0254381 Rosa chinensis HOM05D002044 ORTHO05D005337 4.3e-18 95.5 57 86.0
AagrBONN_evm.TU.Sc2ySwM_228.3117 Anthoceros agrestis HOM05D002044 ORTHO05D005337 2.8e-17 92.8 164 40.9
C07p60500 Brassica napus HOM05D002044 ORTHO05D005337 5.3e-16 88.6 105 58.1
CARHR146540 Cardamine hirsuta HOM05D002044 ORTHO05D005337 5.3e-16 88.6 144 46.5
SEGI_30240 Sequoiadendron giganteum HOM05D002044 ORTHO05D005337 2.6e-15 86.3 83 54.2
Peaxi162Scf00677g00216 Petunia axillaris HOM05D002044 ORTHO05D005337 9.9e-15 84.3 80 60.0
A03p62800 Brassica napus HOM05D002044 ORTHO05D005337 2.2e-14 83.2 75 54.7
ECA248G0245 Erigeron canadensis HOM05D000121 ORTHO05D000102 2.1e-12 76.6 120 45.8
A03p62780 Brassica napus HOM05D002044 ORTHO05D005337 6.7e-11 71.6 87 59.8
BraA03t15355Z Brassica rapa HOM05D002044 ORTHO05D005337 1.6e-09 67.0 62 51.6
Lsat_1_v5_gn_5_114660 Lactuca sativa HOM05D002044 ORTHO05D019245 2.8e-09 66.2 100 50.0
Lalb_Chr05g0225171 Lupinus albus HOM05D002044 ORTHO05D005000 1.3e-06 57.4 150 30.0


User provided reference genes

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