Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022952 Camellia sinensis var. sinensis HOM05D012567 ORTHO05D004696 1.1e-171 606.7 327 100.0
CSS0038346 Camellia sinensis var. sinensis HOM05D012567 ORTHO05D004696 3.4e-170 601.7 327 99.1
HanXRQChr03g0074171 Helianthus annuus HOM05D012567 ORTHO05D004696 2.1e-42 177.2 312 37.2
HanXRQChr03g0074111 Helianthus annuus HOM05D012567 ORTHO05D004696 3.3e-40 169.9 312 35.3
HanXRQChr03g0074151 Helianthus annuus HOM05D012567 ORTHO05D004696 5.7e-40 169.1 312 35.3
TAR626G1729 Trochodendron aralioides HOM05D004960 ORTHO05D004696 7.7e-37 158.7 320 36.6
Lsat_1_v5_gn_7_52621 Lactuca sativa HOM05D012567 ORTHO05D004696 2.9e-36 156.8 323 35.0
MBI14_g30701_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 7.2e-35 152.1 316 32.0
HanXRQChr09g0244301 Helianthus annuus HOM05D012567 ORTHO05D004696 1.4e-33 147.9 320 37.2
HanXRQChr03g0074181 Helianthus annuus HOM05D012567 ORTHO05D004696 1.5e-32 144.4 232 37.5
Cc06_g13850 Coffea canephora HOM05D012567 ORTHO05D004696 2.4e-30 137.1 309 32.7
Lsat_1_v5_gn_7_52661 Lactuca sativa HOM05D012567 ORTHO05D004696 7.0e-30 135.6 319 32.6
TAR626G1223 Trochodendron aralioides HOM05D004960 ORTHO05D004696 9.1e-30 135.2 322 31.4
Lsat_1_v5_gn_7_52601 Lactuca sativa HOM05D012567 ORTHO05D004696 2.0e-29 134.0 321 34.6
MBI14_g30696_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 7.7e-29 132.1 291 32.3
Lsat_1_v5_gn_7_52640 Lactuca sativa HOM05D012567 ORTHO05D004696 5.0e-28 129.4 323 32.8
MBI14_g30695_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.1e-27 128.3 289 30.8
ECA240G1251 Erigeron canadensis HOM05D012567 ORTHO05D004696 2.7e-26 123.6 241 33.6
HanXRQChr06g0167601 Helianthus annuus HOM05D012567 ORTHO05D004696 3.0e-25 120.2 317 32.8
TAR626G0702 Trochodendron aralioides HOM05D004960 ORTHO05D004696 3.4e-24 116.7 296 29.7
ATR0580G065 Amborella trichopoda HOM05D004960 ORTHO05D004696 9.8e-24 115.2 300 29.3
MBI14_g30692_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 3.7e-23 113.2 300 30.7
ATR0580G174 Amborella trichopoda HOM05D004960 ORTHO05D004696 1.4e-22 111.3 303 28.7
TAR625G0177 Trochodendron aralioides HOM05D004960 ORTHO05D004696 2.4e-22 110.5 307 29.6
Dinv41298 Davidia involucrata HOM05D004960 ORTHO05D004696 4.1e-22 109.8 286 31.5
Potri.010G250300 Populus trichocarpa HOM05D004960 ORTHO05D004696 7.7e-21 105.5 306 29.4
TAR383G0345 Trochodendron aralioides HOM05D004960 ORTHO05D004696 7.7e-21 105.5 306 30.4
TAR383G0876 Trochodendron aralioides HOM05D004960 ORTHO05D004696 7.7e-21 105.5 296 30.7
TAR383G0614 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.1e-19 101.7 296 30.4
Aqoxy7G03205 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 2.7e-18 97.1 306 31.0
Aqoxy7G03204 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 3.6e-18 96.7 314 30.9
MBI14_g30694_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 8.0e-18 95.5 314 28.7
CSS0034998 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 1.0e-17 95.1 313 26.8
Cfa013540 Carpinus fangiana HOM05D004960 ORTHO05D004696 1.0e-17 95.1 248 31.9
Cc06_g13870 Coffea canephora HOM05D004960 ORTHO05D004696 1.8e-17 94.4 300 25.0
COL.COLO4_16060 Corchorus olitorius HOM05D004960 ORTHO05D004696 1.8e-17 94.4 295 32.2
Eucgr.C00202 Eucalyptus grandis HOM05D004960 ORTHO05D004696 1.5e-16 91.3 290 28.6
Cc06_g13860 Coffea canephora HOM05D004960 ORTHO05D004696 2.6e-16 90.5 317 27.4
Nn2g12577 Nelumbo nucifera HOM05D004960 ORTHO05D004696 2.6e-16 90.5 321 29.6
QL02p095902 Quercus lobata HOM05D004960 ORTHO05D004696 4.4e-16 89.7 302 29.5
Rhsim01G0010200 Rhododendron simsii HOM05D004960 ORTHO05D004696 4.4e-16 89.7 319 28.2
RcHm_v2.0_Chr4g0404721 Rosa chinensis HOM05D004960 ORTHO05D004696 4.4e-16 89.7 305 27.2
Manes.13G066000 Manihot esculenta HOM05D004960 ORTHO05D004696 5.7e-16 89.4 290 27.9
Haze_10109 Corylus avellana HOM05D004960 ORTHO05D004696 7.5e-16 89.0 266 30.1
CSS0015847 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 9.8e-16 88.6 287 27.9
Actinidia38795 Actinidia chinensis HOM05D004960 ORTHO05D004696 1.3e-15 88.2 303 28.7
TWI63G1126 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 1.3e-15 88.2 297 28.6
CSS0018327 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 1.7e-15 87.8 313 25.9
Dinv43330 Davidia involucrata HOM05D004960 ORTHO05D004696 2.2e-15 87.4 221 30.8
MD16G1263500 Malus domestica HOM05D004960 ORTHO05D004696 3.7e-15 86.7 311 29.3
Eucgr.J03153 Eucalyptus grandis HOM05D004960 ORTHO05D004696 4.9e-15 86.3 315 26.3
Prupe.1G095900 Prunus persica HOM05D004960 ORTHO05D004696 4.9e-15 86.3 298 27.9
Nn8g40270 Nelumbo nucifera HOM05D004960 ORTHO05D004696 6.3e-15 85.9 308 26.6
TAR626G1398 Trochodendron aralioides HOM05D004960 ORTHO05D004696 6.3e-15 85.9 242 35.1
RcHm_v2.0_Chr4g0404711 Rosa chinensis HOM05D004960 ORTHO05D004696 1.8e-14 84.3 318 26.4
CSS0049948 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 2.4e-14 84.0 312 25.3
Migut.K00271 Erythranthe guttata HOM05D004960 ORTHO05D004696 5.4e-14 82.8 307 26.4
PSO063G2425 Papaver somniferum HOM05D004960 ORTHO05D004696 7.0e-14 82.4 308 26.0
Hma1.2p1_0921F.1_g236760 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 9.1e-14 82.0 294 27.6
Hma1.2p1_0921F.1_g236792 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 9.1e-14 82.0 294 27.6
MBI14_g30697_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.2e-13 81.6 290 27.2
Aqoxy7G03208 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 2.0e-13 80.9 292 27.4
Aqoxy7G03202 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 4.5e-13 79.7 311 27.0
Thecc.09G162700 Theobroma cacao HOM05D004960 ORTHO05D004696 4.5e-13 79.7 301 27.2
HPP92_010759 Vanilla planifolia HOM05D004960 ORTHO05D004696 1.0e-12 78.6 296 26.7
Migut.J01407 Erythranthe guttata HOM05D004960 ORTHO05D004696 1.7e-12 77.8 298 25.5
Ciclev10008947m.g Citrus clementina HOM05D004960 ORTHO05D004696 2.3e-12 77.4 296 25.3
Ciclev10008957m.g Citrus clementina HOM05D004960 ORTHO05D004696 2.3e-12 77.4 311 24.8
Solyc07g006420.1 Solanum lycopersicum HOM05D004960 ORTHO05D004696 2.3e-12 77.4 300 25.7
TWI34G0908 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 2.9e-12 77.0 234 29.9
Oeu024903.1 Olea europaea HOM05D004960 ORTHO05D004696 3.8e-12 76.6 288 25.7
Dinv41300 Davidia involucrata HOM05D004960 ORTHO05D004696 5.0e-12 76.3 288 27.8
Lsat_1_v5_gn_7_52700 Lactuca sativa HOM05D004960 ORTHO05D004696 8.6e-12 75.5 284 26.1
MBI14_g30691_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.1e-11 75.1 298 25.2
Atru.chr7.532 Acer truncatum HOM05D004960 ORTHO05D004696 1.5e-11 74.7 291 26.1
MBI14_g30699_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.5e-11 74.7 316 28.2
Nn1g04315 Nelumbo nucifera HOM05D004960 ORTHO05D004696 2.5e-11 73.9 236 29.2
TAR626G1419 Trochodendron aralioides HOM05D004960 ORTHO05D004696 3.3e-11 73.6 334 28.7
Prupe.1G095700 Prunus persica HOM05D004960 ORTHO05D004696 5.6e-11 72.8 235 28.1
Aqoxy7G03206 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 7.2e-11 72.4 200 29.0
Dinv42772 Davidia involucrata HOM05D004960 ORTHO05D004696 7.2e-11 72.4 204 28.4
Rhsim01G0010300 Rhododendron simsii HOM05D004960 ORTHO05D004696 7.2e-11 72.4 319 25.1
Migut.J01430 Erythranthe guttata HOM05D004960 ORTHO05D004696 1.2e-10 71.6 291 30.6
TWI32G0132 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 4.7e-10 69.7 303 24.4
Thecc.09G163000 Theobroma cacao HOM05D004960 ORTHO05D004696 6.1e-10 69.3 227 27.3
Oeu043380.1 Olea europaea HOM05D004960 ORTHO05D004696 8.0e-10 68.9 234 26.9
Actinidia38650 Actinidia chinensis HOM05D004960 ORTHO05D004696 1.4e-09 68.2 306 26.5
Hma1.2p1_0921F.1_g236770 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 1.4e-09 68.2 218 26.1
Hma1.2p1_0921F.1_g236794 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 1.4e-09 68.2 218 26.1
PGSC0003DMG400034810 Solanum tuberosum HOM05D004960 ORTHO05D004696 1.8e-09 67.8 219 26.9
TWI12G0641 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 1.8e-09 67.8 214 29.0
Migut.K00270 Erythranthe guttata HOM05D004960 ORTHO05D004696 2.3e-09 67.4 273 26.7
CSS0019658 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 3.0e-09 67.0 288 26.4
FAN11G1677 Fragaria x ananassa HOM05D000001 ORTHO05D009942 3.0e-09 67.0 291 27.1
Manes.08G144300 Manihot esculenta HOM05D000001 ORTHO05D009942 3.0e-09 67.0 257 30.4
FvH4_3g13180 Fragaria vesca HOM05D000001 ORTHO05D009942 5.2e-09 66.2 291 27.1
DCAR_014401 Daucus carota HOM05D001062 ORTHO05D000884 8.9e-09 65.5 330 25.5
VMungo0647G0121 Vigna mungo HOM05D001062 ORTHO05D000884 8.9e-09 65.5 310 26.1
FAN21G0240 Fragaria x ananassa HOM05D008511 ORTHO05D010691 1.5e-08 64.7 230 28.3
Lj1g0010358 Lotus japonicus HOM05D001062 ORTHO05D000884 1.5e-08 64.7 322 26.1
Ciclev10003650m.g Citrus clementina HOM05D001062 ORTHO05D000884 2.6e-08 63.9 301 26.2
FAN25G3648 Fragaria x ananassa HOM05D000001 ORTHO05D009942 2.6e-08 63.9 291 26.8
Sabra02G0057700 Salix brachista HOM05D001062 ORTHO05D000884 2.6e-08 63.9 325 24.0
SGA_v2.0_scaffold69G23316 Striga asiatica HOM05D004960 ORTHO05D004696 3.4e-08 63.5 291 25.1
PGR102G2354 Punica granatum HOM05D001062 ORTHO05D000884 4.4e-08 63.2 315 23.8
SalBow6G0476 Salvia bowleyana HOM05D004960 ORTHO05D004696 4.4e-08 63.2 188 29.8
Actinidia35989 Actinidia chinensis HOM05D004960 ORTHO05D004696 7.5e-08 62.4 298 24.5
Hma1.2p1_0642F.1_g194390 Hydrangea macrophylla HOM05D001062 ORTHO05D000884 9.8e-08 62.0 301 26.9
Oeu037992.1 Olea europaea HOM05D004960 ORTHO05D004696 9.8e-08 62.0 297 25.3
Atru.chr12.164 Acer truncatum HOM05D004960 ORTHO05D004696 1.3e-07 61.6 212 28.8
Pp3c5_10650 Physcomitrium patens HOM05D001062 ORTHO05D000884 1.7e-07 61.2 323 24.8
HanXRQChr03g0068521 Helianthus annuus HOM05D004960 ORTHO05D004696 2.9e-07 60.5 207 27.1
Nn8g40269 Nelumbo nucifera HOM05D000001 ORTHO05D009942 2.9e-07 60.5 289 27.3
Prupe.1G096000 Prunus persica HOM05D000001 ORTHO05D009942 2.9e-07 60.5 293 27.6
PGR044G0276 Punica granatum HOM05D001062 ORTHO05D000884 2.9e-07 60.5 323 23.5
FAN16G0931 Fragaria x ananassa HOM05D000001 ORTHO05D009942 3.7e-07 60.1 291 26.5
Thecc.01G133100 Theobroma cacao HOM05D001062 ORTHO05D000884 3.7e-07 60.1 310 26.5
Eucgr.F04013 Eucalyptus grandis HOM05D004960 ORTHO05D004696 4.9e-07 59.7 303 23.4
Lsat_1_v5_gn_8_65701 Lactuca sativa HOM05D004960 ORTHO05D004696 4.9e-07 59.7 298 24.2
Sabra02G0057800 Salix brachista HOM05D001062 ORTHO05D000884 4.9e-07 59.7 321 24.3
TWI12G0285 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 4.9e-07 59.7 292 25.0
Ciclev10001753m.g Citrus clementina HOM05D001062 ORTHO05D000884 6.4e-07 59.3 331 26.3
MELO3C004032.2 Cucumis melo HOM05D000001 ORTHO05D009942 6.4e-07 59.3 243 28.0
ClCG08G002860 Citrullus lanatus HOM05D001062 ORTHO05D000884 8.3e-07 58.9 308 24.7
Duzib116G0744 Durio zibethinus HOM05D001062 ORTHO05D000884 8.3e-07 58.9 315 26.0
MD13G1261300 Malus domestica HOM05D000001 ORTHO05D009942 8.3e-07 58.9 304 27.3
Dinv41299 Davidia involucrata HOM05D004960 ORTHO05D004696 1.1e-06 58.5 308 25.0
Gohir.A05G384300 Gossypium hirsutum HOM05D001062 ORTHO05D000884 1.4e-06 58.2 307 26.1
Lsat_1_v5_gn_6_97761 Lactuca sativa HOM05D001062 ORTHO05D000884 1.4e-06 58.2 213 27.7
Sed0001987 Sechium edule HOM05D001062 ORTHO05D000884 1.4e-06 58.2 307 23.5
TAR381G1261 Trochodendron aralioides HOM05D001062 ORTHO05D000884 1.4e-06 58.2 223 27.8
ClCG11G017010 Citrullus lanatus HOM05D001062 ORTHO05D000884 2.4e-06 57.4 225 26.2
Actinidia15174 Actinidia chinensis HOM05D001062 ORTHO05D000884 3.2e-06 57.0 226 27.9
Atru.chr4.907 Acer truncatum HOM05D001062 ORTHO05D000884 4.1e-06 56.6 312 22.8
Cfa000695 Carpinus fangiana HOM05D001062 ORTHO05D000884 4.1e-06 56.6 236 25.4
Pp3c6_23080 Physcomitrium patens HOM05D001062 ORTHO05D000884 4.1e-06 56.6 323 23.5
Glyma.11G178501 Glycine max HOM05D001062 ORTHO05D000884 5.4e-06 56.2 334 24.3
Glyma.13G037000 Glycine max HOM05D001062 ORTHO05D000884 5.4e-06 56.2 334 24.3
Gohir.D04G031300 Gossypium hirsutum HOM05D001062 ORTHO05D000884 5.4e-06 56.2 309 25.9
Gorai.012G035400 Gossypium raimondii HOM05D001062 ORTHO05D000884 5.4e-06 56.2 309 25.9
PSO675G9215 Papaver somniferum HOM05D001062 ORTHO05D000884 5.4e-06 56.2 327 24.5
Sed0010695 Sechium edule HOM05D001062 ORTHO05D000884 5.4e-06 56.2 325 24.6
TWI38G2206 Tripterygium wilfordii HOM05D001062 ORTHO05D000884 5.4e-06 56.2 236 26.7
ClCG11G012210 Citrullus lanatus HOM05D000001 ORTHO05D009942 7.0e-06 55.8 288 27.8
Oeu037995.1 Olea europaea HOM05D004960 ORTHO05D004696 7.0e-06 55.8 151 28.5
Prupe.1G095800 Prunus persica HOM05D004960 ORTHO05D004696 7.0e-06 55.8 111 35.1
CSS0021222 Camellia sinensis var. sinensis HOM05D001062 ORTHO05D000884 9.2e-06 55.5 237 25.7
Duzib264G0268 Durio zibethinus HOM05D001062 ORTHO05D000884 9.2e-06 55.5 311 24.4
HanXRQChr03g0068481 Helianthus annuus HOM05D004960 ORTHO05D004696 9.2e-06 55.5 286 24.5
Lalb_Chr25g0281621 Lupinus albus HOM05D001062 ORTHO05D000884 9.2e-06 55.5 341 25.2
MBI14_g08066_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009942 9.2e-06 55.5 233 24.5
PSO541G0590 Papaver somniferum HOM05D001062 ORTHO05D000884 9.2e-06 55.5 322 23.6
PGR008G0005 Punica granatum HOM05D001062 ORTHO05D000884 9.2e-06 55.5 321 25.5
PGR119G1555 Punica granatum HOM05D001062 ORTHO05D000884 9.2e-06 55.5 321 25.5
SEGI_00560 Sequoiadendron giganteum HOM05D001062 ORTHO05D000884 9.2e-06 55.5 309 23.6


User provided reference genes

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