Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022948 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.3e-34 147.1 75 100.0
CSS0048686 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.1e-23 112.8 78 78.2
CSS0015841 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.0e-22 106.7 95 65.3
CSS0046072 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.0e-22 106.7 95 65.3
CSS0025880 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.4e-21 105.9 78 74.4
CSS0050078 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.3e-21 105.1 95 64.2
RhsimUnG0178000 Rhododendron simsii HOM05D000002 ORTHO05D000001 6.7e-21 103.6 95 63.2
CSS0013769 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.8e-21 103.2 95 63.2
Rhsim03G0172600 Rhododendron simsii HOM05D000002 ORTHO05D000001 8.8e-21 103.2 95 63.2
Rhsim09G0033700 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.5e-20 102.4 95 62.1
RhsimUnG0182300 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.5e-20 102.4 95 62.1
Rhsim01G0080600 Rhododendron simsii HOM05D000002 ORTHO05D000001 2.0e-20 102.1 95 62.1
CSS0041440 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.3e-20 101.3 95 62.1
Rhsim02G0093500 Rhododendron simsii HOM05D000002 ORTHO05D000001 4.4e-20 100.9 95 61.1
Ciclev10013956m.g Citrus clementina HOM05D000002 ORTHO05D000001 6.3e-19 97.1 95 62.1
Rhsim08G0049500 Rhododendron simsii HOM05D004871 ORTHO05D005755 6.3e-19 97.1 58 82.8
CANSAT01G2627 Cannabis sativa HOM05D000002 ORTHO05D000001 4.1e-18 94.4 90 56.7
CSS0015826 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.0e-18 93.6 57 80.7
Nn1g04729 Nelumbo nucifera HOM05D000002 ORTHO05D000001 2.0e-17 92.0 95 60.0
Nn2g10460 Nelumbo nucifera HOM05D000002 ORTHO05D000001 4.5e-17 90.9 93 54.8
Sopen05g010210 Solanum pennellii HOM05D000002 ORTHO05D000001 4.5e-17 90.9 95 54.7
Sopen10g016240 Solanum pennellii HOM05D000002 ORTHO05D000001 4.5e-17 90.9 95 54.7
Sopen10g031560 Solanum pennellii HOM05D000002 ORTHO05D000001 4.5e-17 90.9 95 54.7
Sopen11g010630 Solanum pennellii HOM05D000002 ORTHO05D000001 4.5e-17 90.9 95 54.7
Nn2g13324 Nelumbo nucifera HOM05D000002 ORTHO05D000001 5.9e-17 90.5 90 56.7
Manes.09G095934 Manihot esculenta HOM05D000002 ORTHO05D000001 1.3e-16 89.4 93 53.8
Nn1g06669 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.3e-16 89.4 95 58.9
Nn1g04728 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.7e-16 89.0 89 59.6
CSS0024481 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.9e-16 88.2 96 55.2
Atru.chr4.1540 Acer truncatum HOM05D000002 ORTHO05D000001 3.8e-16 87.8 95 55.8
Nn2g12419 Nelumbo nucifera HOM05D000002 ORTHO05D000001 3.8e-16 87.8 96 55.2
Sopen01g009120 Solanum pennellii HOM05D000002 ORTHO05D000001 3.8e-16 87.8 95 54.7
Atru.chr5.2716 Acer truncatum HOM05D000002 ORTHO05D000001 5.0e-16 87.4 60 75.0
Nn8g41156 Nelumbo nucifera HOM05D000002 ORTHO05D000001 5.0e-16 87.4 74 62.2
Sopen03g025100 Solanum pennellii HOM05D000002 ORTHO05D000001 8.5e-16 86.7 95 54.7
Nn6g34560 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.1e-15 86.3 96 54.2
Nn6g34561 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.1e-15 86.3 96 54.2
Sopen01g013480 Solanum pennellii HOM05D000002 ORTHO05D000001 1.1e-15 86.3 90 56.7
CSS0008047 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.5e-15 85.9 75 66.7
Hma1.2p1_0820F.1_g223995 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.9e-15 85.5 58 75.9
Hma1.2p1_0820F.1_g224020 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.9e-15 85.5 58 75.9
Nn4g26209 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.9e-15 85.5 94 57.4
Nn4g26285 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.9e-15 85.5 97 53.6
RcHm_v2.0_Chr2g0154461 Rosa chinensis HOM05D000002 ORTHO05D000001 2.5e-15 85.1 95 50.5
RcHm_v2.0_Chr7g0198271 Rosa chinensis HOM05D000002 ORTHO05D000001 2.5e-15 85.1 95 50.5
Hma1.2p1_0414F.1_g147800 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 3.2e-15 84.7 93 50.5
Nn1g06976 Nelumbo nucifera HOM05D000002 ORTHO05D000001 4.2e-15 84.3 95 49.5
Nn1g07710 Nelumbo nucifera HOM05D000002 ORTHO05D000001 5.5e-15 84.0 97 52.6
Lalb_Chr23g0274091 Lupinus albus HOM05D000002 ORTHO05D000001 9.4e-15 83.2 95 51.6
Sopen03g020180 Solanum pennellii HOM05D000002 ORTHO05D000001 1.2e-14 82.8 95 51.6
Sopen10g021260 Solanum pennellii HOM05D000002 ORTHO05D000001 1.2e-14 82.8 95 53.7
Atru.chr10.1094 Acer truncatum HOM05D000002 ORTHO05D000001 1.6e-14 82.4 95 50.5
Sopen01g011890 Solanum pennellii HOM05D000002 ORTHO05D000001 1.6e-14 82.4 90 51.1
CSS0042530 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.1e-14 82.0 95 47.4
Hma1.2p1_0764F.1_g215020 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.1e-14 82.0 58 72.4
Hma1.2p1_0171F.1_g075850 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.7e-14 81.6 98 51.0
Hma1.2p1_0176F.1_g077340 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.7e-14 81.6 96 52.1
Sopen01g017420 Solanum pennellii HOM05D000002 ORTHO05D000001 2.7e-14 81.6 95 49.5
Sopen05g010950 Solanum pennellii HOM05D000002 ORTHO05D000001 2.7e-14 81.6 95 49.5
Sopen05g018370 Solanum pennellii HOM05D000002 ORTHO05D000001 2.7e-14 81.6 95 49.5
Sopen06g017010 Solanum pennellii HOM05D000002 ORTHO05D000001 2.7e-14 81.6 95 49.5
CSS0017329 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.6e-14 81.3 95 48.4
CSS0039281 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.7e-14 80.9 90 51.1
EL10Ac8g19578 Beta vulgaris HOM05D000002 ORTHO05D000001 6.1e-14 80.5 97 49.5
CSS0017873 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.1e-14 80.5 95 48.4
Nn4g24384 Nelumbo nucifera HOM05D000002 ORTHO05D000001 6.1e-14 80.5 96 52.1
CSS0010947 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.0e-14 80.1 96 52.1
CSS0044856 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.0e-14 80.1 95 48.4
CSS0008175 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.0e-13 79.7 74 59.5
Hma1.2p1_2049F.1_g312480 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.0e-13 79.7 96 51.0
CSS0020765 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.4e-13 79.3 97 51.5
SHI52580 Sapria himalayana HOM05D000002 ORTHO05D000001 1.4e-13 79.3 95 48.4
SHI53128 Sapria himalayana HOM05D000002 ORTHO05D000001 1.4e-13 79.3 95 48.4
CSS0040082 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.3e-13 78.6 89 53.9
CSS0000038 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.0e-13 78.2 93 47.3
CSS0012950 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.0e-13 78.2 95 53.7
CSS0014796 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.0e-13 78.2 74 59.5
CSS0045643 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.0e-13 78.2 90 48.9
CSS0047274 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.0e-13 78.2 95 47.4
Sopen05g007860 Solanum pennellii HOM05D000002 ORTHO05D000001 3.0e-13 78.2 93 48.4
Sopen11g022020 Solanum pennellii HOM05D000002 ORTHO05D000001 3.0e-13 78.2 95 48.4
CSS0005068 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.0e-13 77.8 95 50.5
CSS0040283 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.0e-13 77.8 95 50.5
CSS0045479 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.0e-13 77.8 90 48.9
Sopen01g013490 Solanum pennellii HOM05D000002 ORTHO05D000001 4.0e-13 77.8 95 50.5
Nn2g15368 Nelumbo nucifera HOM05D000002 ORTHO05D000001 5.2e-13 77.4 77 61.0
QL11p047249 Quercus lobata HOM05D000002 ORTHO05D000001 5.2e-13 77.4 95 47.4
Sopen01g013110 Solanum pennellii HOM05D000002 ORTHO05D000001 5.2e-13 77.4 60 66.7
Hma1.2p1_1719F.1_g299230 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 6.8e-13 77.0 96 51.0
Hma1.2p1_1768F.1_g301590 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 6.8e-13 77.0 96 51.0
Sopen07g005890 Solanum pennellii HOM05D000002 ORTHO05D000001 6.8e-13 77.0 95 49.5
MD01G1101100 Malus domestica HOM05D000002 ORTHO05D000001 8.8e-13 76.6 95 50.5
FvH4_1g18381 Fragaria vesca HOM05D000002 ORTHO05D000001 1.2e-12 76.3 73 58.9
FvH4_6g43841 Fragaria vesca HOM05D000002 ORTHO05D000001 1.2e-12 76.3 94 47.9
Hma1.2p1_1498F.1_g287120 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.2e-12 76.3 95 47.4
RcHm_v2.0_Chr4g0409151 Rosa chinensis HOM05D000002 ORTHO05D000001 1.2e-12 76.3 93 45.2
Hma1.2p1_0184F.1_g081330 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.6e-12 75.1 95 46.3
Nn2g14659 Nelumbo nucifera HOM05D000002 ORTHO05D000001 2.6e-12 75.1 95 46.3
Manes.10G112229 Manihot esculenta HOM05D000002 ORTHO05D000001 7.5e-12 73.6 95 46.3
Nn5g30083 Nelumbo nucifera HOM05D000002 ORTHO05D000001 7.5e-12 73.6 95 45.3
FvH4_1g02351 Fragaria vesca HOM05D000002 ORTHO05D000001 9.7e-12 73.2 94 45.7
Hma1.2p1_0774F.1_g216300 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 9.7e-12 73.2 95 46.3
CSS0016553 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.3e-11 72.8 39 89.7
CSS0024524 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.3e-11 72.8 39 89.7
CSS0044932 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.2e-11 72.0 87 49.4
ECA240G3412 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.8e-11 71.6 58 58.6
Rhsim13G0212300 Rhododendron simsii HOM05D000002 ORTHO05D000001 3.7e-11 71.2 90 47.8
CSS0001792 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.3e-11 70.1 91 46.2
Nn7g37206 Nelumbo nucifera HOM05D000002 ORTHO05D000001 8.3e-11 70.1 60 56.7
CSS0002244 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.4e-10 68.6 88 47.7
Nn8g40241 Nelumbo nucifera HOM05D000002 ORTHO05D000001 2.4e-10 68.6 76 57.9
ECA247G3331 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.1e-10 68.2 94 41.5
MSTRG.3250 Avicennia marina HOM05D000002 ORTHO05D000001 4.1e-10 67.8 54 63.0
CSS0003655 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.1e-10 67.8 58 58.6
Nn5g26837 Nelumbo nucifera HOM05D000002 ORTHO05D000001 4.1e-10 67.8 58 60.3
RcHm_v2.0_Chr1g0330731 Rosa chinensis HOM05D000002 ORTHO05D000001 4.1e-10 67.8 95 44.2
RcHm_v2.0_Chr7g0237911 Rosa chinensis HOM05D000002 ORTHO05D000001 5.3e-10 67.4 95 44.2
Sopen10g012380 Solanum pennellii HOM05D000002 ORTHO05D000001 7.0e-10 67.0 69 52.2
Sopen12g017790 Solanum pennellii HOM05D000002 ORTHO05D000001 9.1e-10 66.6 54 63.0
CSS0016567 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.2e-09 66.2 93 43.0
CSS0037972 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.2e-09 66.2 58 56.9
Manes.08G103711 Manihot esculenta HOM05D000002 ORTHO05D000001 1.2e-09 66.2 74 52.7
Ciclev10013585m.g Citrus clementina HOM05D000002 ORTHO05D000001 1.6e-09 65.9 58 58.6
ECA238G0437 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.6e-09 65.9 91 42.9
CSS0018129 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.5e-09 64.3 49 65.3
BolC4t26198H Brassica oleracea HOM05D000002 ORTHO05D000001 5.9e-09 63.9 60 48.3
CSS0021106 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.9e-09 63.9 60 56.7
Nn1g02421 Nelumbo nucifera HOM05D000002 ORTHO05D000001 7.7e-09 63.5 81 48.1
ECA234G3833 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.0e-08 63.2 94 39.4
CSS0019043 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.7e-08 62.4 98 44.9
SHI05323 Sapria himalayana HOM05D000002 ORTHO05D000001 1.7e-08 62.4 61 54.1
Sopen12g010580 Solanum pennellii HOM05D000014 ORTHO05D000093 2.2e-08 62.0 48 62.5
ECA248G1333 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.9e-08 61.6 60 51.7
ECA234G4791 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.8e-08 61.2 58 51.7
Nn3g21197 Nelumbo nucifera HOM05D000002 ORTHO05D000001 3.8e-08 61.2 74 47.3
RcHm_v2.0_Chr5g0056061 Rosa chinensis HOM05D000002 ORTHO05D000001 1.1e-07 59.7 56 55.4
CSS0047943 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.5e-07 59.3 45 64.4
ECA234G3983 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.5e-07 59.3 60 46.7
Nn1g02200 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.9e-07 58.9 58 55.2
PSO541G3208 Papaver somniferum HOM05D000002 ORTHO05D000001 1.9e-07 58.9 92 43.5
CSS0046990 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.2e-07 58.2 39 76.9
ECA248G1474 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.2e-07 58.2 58 46.6
FvH4_7g13272 Fragaria vesca HOM05D000002 ORTHO05D000001 3.2e-07 58.2 58 48.3
Sopen07g012350 Solanum pennellii HOM05D000002 ORTHO05D000001 4.2e-07 57.8 56 55.4
EL10Ac6g13816 Beta vulgaris HOM05D000002 ORTHO05D000001 5.5e-07 57.4 85 43.5
ECA232G4093 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.5e-07 57.4 92 35.9
Ciclev10024469m.g Citrus clementina HOM05D000002 ORTHO05D000001 7.2e-07 57.0 37 73.0
ECA246G4670 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.2e-07 57.0 58 50.0
Nn1g08143 Nelumbo nucifera HOM05D000002 ORTHO05D000001 7.2e-07 57.0 75 52.0
ECA248G2341 Erigeron canadensis HOM05D000002 ORTHO05D000001 9.4e-07 56.6 60 45.0
CSS0034655 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.2e-06 56.2 36 77.8
VMungo1309G0289 Vigna mungo HOM05D002892 ORTHO05D003224 1.6e-06 55.8 95 37.9
ECA232G0373 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.1e-06 55.5 58 50.0
CAN.G1438.1 Capsicum annuum HOM05D000002 ORTHO05D000001 2.7e-06 55.1 58 50.0
ECA246G0354 Erigeron canadensis HOM05D000230 ORTHO05D000176 3.6e-06 54.7 54 48.1
Nn6g34150 Nelumbo nucifera HOM05D000002 ORTHO05D000001 3.6e-06 54.7 33 75.8
EL10Ac9g20778 Beta vulgaris HOM05D000002 ORTHO05D000001 6.1e-06 53.9 58 44.8
SEGI_07554 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 8.0e-06 53.5 33 75.8


User provided reference genes

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