Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022945 Camellia sinensis var. sinensis HOM05D004878 ORTHO05D006497 2.2e-32 141.7 74 100.0
CSS0029949 Camellia sinensis var. sinensis HOM05D004878 ORTHO05D006497 7.1e-31 136.7 73 95.9
FAN16G2586 Fragaria x ananassa HOM05D004878 ORTHO05D006497 2.4e-23 111.7 72 76.4
FAN21G2052 Fragaria x ananassa HOM05D004878 ORTHO05D006497 2.4e-23 111.7 72 76.4
RcHm_v2.0_Chr5g0019961 Rosa chinensis HOM05D004878 ORTHO05D006497 2.4e-23 111.7 72 76.4
Nn7g38129 Nelumbo nucifera HOM05D004878 ORTHO05D006497 3.2e-23 111.3 72 77.8
Prupe.4G110600 Prunus persica HOM05D004878 ORTHO05D006497 3.2e-23 111.3 72 79.2
QL11p017966 Quercus lobata HOM05D004878 ORTHO05D006497 3.2e-23 111.3 72 76.4
FAN25G2275 Fragaria x ananassa HOM05D004878 ORTHO05D006497 7.1e-23 110.2 72 75.0
FvH4_3g12170 Fragaria vesca HOM05D004878 ORTHO05D006497 2.7e-22 108.2 72 75.0
MD10G1234100 Malus domestica HOM05D004878 ORTHO05D006497 3.5e-22 107.8 72 76.4
vmacro03511 Vaccinium macrocarpon HOM05D004878 ORTHO05D006497 4.6e-22 107.5 72 80.6
Potri.012G120492 Populus trichocarpa HOM05D004878 ORTHO05D006497 7.8e-22 106.7 70 75.7
Sabra12G0088600 Salix brachista HOM05D004878 ORTHO05D006497 1.3e-21 105.9 68 76.5
Sabra12G0091900 Salix brachista HOM05D004878 ORTHO05D006497 1.3e-21 105.9 68 76.5
TWI63G1027 Tripterygium wilfordii HOM05D004878 ORTHO05D006497 1.7e-21 105.5 72 72.2
Cfa000720 Carpinus fangiana HOM05D004878 ORTHO05D006497 3.0e-21 104.8 72 72.2
CiPaw.09G078300 Carya illinoinensis HOM05D004878 ORTHO05D006497 3.0e-21 104.8 72 72.2
DCAR_003786 Daucus carota HOM05D004878 ORTHO05D006497 3.9e-21 104.4 71 71.8
MD05G1355100 Malus domestica HOM05D004878 ORTHO05D006497 5.1e-21 104.0 71 74.6
GSVIVG01012083001 Vitis vinifera HOM05D004878 ORTHO05D006497 8.7e-21 103.2 73 67.1
Gohir.D05G147300 Gossypium hirsutum HOM05D004878 ORTHO05D006497 1.1e-20 102.8 70 71.4
Gorai.009G151300 Gossypium raimondii HOM05D004878 ORTHO05D006497 1.1e-20 102.8 70 71.4
COL.COLO4_30984 Corchorus olitorius HOM05D004878 ORTHO05D006497 1.5e-20 102.4 71 70.4
Manes.16G059325 Manihot esculenta HOM05D004878 ORTHO05D006497 1.5e-20 102.4 70 75.7
Actinidia33655 Actinidia chinensis HOM05D004878 ORTHO05D006497 1.9e-20 102.1 68 79.4
Gohir.A05G144900 Gossypium hirsutum HOM05D004878 ORTHO05D006497 4.3e-20 100.9 70 70.0
MD05G1253100 Malus domestica HOM05D004878 ORTHO05D006497 4.3e-20 100.9 72 70.8
Thecc.06G141500 Theobroma cacao HOM05D004878 ORTHO05D006497 5.6e-20 100.5 71 70.4
Ciclev10015670m.g Citrus clementina HOM05D004878 ORTHO05D006497 1.3e-19 99.4 72 72.2
Rhsim13G0131200 Rhododendron simsii HOM05D004878 ORTHO05D006497 1.3e-19 99.4 69 81.2
SalBow8G2261 Salvia bowleyana HOM05D004878 ORTHO05D006497 1.3e-19 99.4 70 68.6
SalBow8G4975 Salvia bowleyana HOM05D004878 ORTHO05D006497 1.3e-19 99.4 70 68.6
Duzib235G0192 Durio zibethinus HOM05D004878 ORTHO05D006497 2.1e-19 98.6 71 66.2
MD05G1253500 Malus domestica HOM05D004878 ORTHO05D006497 4.8e-19 97.4 71 71.8
Cpa.g.sc135.17 Carica papaya HOM05D004878 ORTHO05D006497 6.2e-19 97.1 71 67.6
Lj1A1144T48 Lonicera japonica HOM05D004878 ORTHO05D006497 6.2e-19 97.1 70 68.6
PSO675G2265 Papaver somniferum HOM05D004878 ORTHO05D006497 6.2e-19 97.1 73 69.9
Migut.M01973 Erythranthe guttata HOM05D004878 ORTHO05D006497 1.8e-18 95.5 71 66.2
THA.LOC104798550 Tarenaya hassleriana HOM05D004878 ORTHO05D006497 3.1e-18 94.7 67 70.1
Solyc02g069010.4 Solanum lycopersicum HOM05D004878 ORTHO05D006497 4.0e-18 94.4 67 70.1
Sopen02g018080 Solanum pennellii HOM05D004878 ORTHO05D006497 4.0e-18 94.4 67 70.1
SGA_v2.0_scaffold175G39366 Striga asiatica HOM05D004878 ORTHO05D006497 5.3e-18 94.0 67 71.6
CAN.G519.8 Capsicum annuum HOM05D004878 ORTHO05D006497 1.2e-17 92.8 68 64.7
Potri.015G120400 Populus trichocarpa HOM05D004878 ORTHO05D006497 1.5e-17 92.4 70 70.0
Aqoxy3G04145 Aquilegia oxysepala HOM05D004878 ORTHO05D006497 2.0e-17 92.0 68 72.1
CsaV3_1G017150 Cucumis sativus L. HOM05D004878 ORTHO05D006497 4.5e-17 90.9 71 67.6
BcaB07g32781 Brassica carinata HOM05D004878 ORTHO05D006497 9.9e-17 89.7 71 63.4
HPP92_028557 Vanilla planifolia HOM05D004878 ORTHO05D006497 9.9e-17 89.7 65 69.2
Aa31LG2G15140 Aethionema arabicum HOM05D004878 ORTHO05D006497 1.3e-16 89.4 71 66.2
ClCG01G010320 Citrullus lanatus HOM05D004878 ORTHO05D006497 1.3e-16 89.4 73 65.8
Cc09_g06230 Coffea canephora HOM05D004878 ORTHO05D006497 1.3e-16 89.4 75 65.3
MELO3C025560.2 Cucumis melo HOM05D004878 ORTHO05D006497 1.3e-16 89.4 73 64.4
CANSAT35G1110 Cannabis sativa HOM05D004878 ORTHO05D006497 1.7e-16 89.0 69 66.7
PSO675G3235 Papaver somniferum HOM05D004878 ORTHO05D006497 1.7e-16 89.0 72 63.9
CARHR030660 Cardamine hirsuta HOM05D004878 ORTHO05D006497 3.8e-16 87.8 71 63.4
Sp1g27010 Schrenkiella parvula HOM05D004878 ORTHO05D006497 8.4e-16 86.7 71 63.4
Ah.02g114380 Amaranthus hybridus HOM05D004878 ORTHO05D006497 1.1e-15 86.3 68 69.1
EL10Ac5g11219 Beta vulgaris HOM05D004878 ORTHO05D006497 1.1e-15 86.3 69 69.6
MSTRG.16341 Avicennia marina HOM05D004878 ORTHO05D006497 1.4e-15 85.9 70 65.7
AUR62032164 Chenopodium quinoa HOM05D004878 ORTHO05D006497 1.4e-15 85.9 69 69.6
Lsat_1_v5_gn_5_36260 Lactuca sativa HOM05D004878 ORTHO05D006497 1.4e-15 85.9 71 67.6
AT1G31190 Arabidopsis thaliana HOM05D004878 ORTHO05D006497 2.4e-15 85.1 71 62.0
AUR62036922 Chenopodium quinoa HOM05D004878 ORTHO05D006497 2.4e-15 85.1 69 69.6
Sed0019791 Sechium edule HOM05D004878 ORTHO05D006497 3.2e-15 84.7 66 65.2
Carub.0001s2959 Capsella rubella HOM05D004878 ORTHO05D006497 4.2e-15 84.3 71 62.0
Thhalv10007962m.g Eutrema salsugineum HOM05D004878 ORTHO05D006497 4.2e-15 84.3 71 63.4
Eucgr.E01881 Eucalyptus grandis HOM05D004878 ORTHO05D006497 9.3e-15 83.2 70 65.7
Peaxi162Scf00149g00811 Petunia axillaris HOM05D004878 ORTHO05D006497 1.2e-14 82.8 71 62.0
AL1G49290 Arabidopsis lyrata HOM05D004878 ORTHO05D006497 1.6e-14 82.4 71 62.0
ATR0763G188 Amborella trichopoda HOM05D004878 ORTHO05D006497 2.1e-14 82.0 64 59.4
Sc10g0005320 Simmondsia chinensis HOM05D004878 ORTHO05D006497 2.7e-14 81.6 70 62.9
TPR.G9524 Trifolium pratense HOM05D004878 ORTHO05D006497 4.6e-14 80.9 71 59.2
A09p35050 Brassica napus HOM05D004878 ORTHO05D006497 6.0e-14 80.5 71 60.6
BraA09t39036Z Brassica rapa HOM05D004878 ORTHO05D006497 6.0e-14 80.5 71 60.6
BolC1t01152H Brassica oleracea HOM05D004878 ORTHO05D006497 1.3e-13 79.3 71 60.6
Lalb_Chr11g0072281 Lupinus albus HOM05D004878 ORTHO05D006497 1.3e-13 79.3 68 57.4
Gohir.D05G147200 Gossypium hirsutum HOM05D004878 ORTHO05D006497 1.8e-13 79.0 62 61.3
Gorai.009G151200 Gossypium raimondii HOM05D004878 ORTHO05D006497 1.8e-13 79.0 62 61.3
BcaC05g27149 Brassica carinata HOM05D004878 ORTHO05D006497 3.0e-13 78.2 71 59.2
C05p30360 Brassica napus HOM05D004878 ORTHO05D006497 3.0e-13 78.2 71 59.2
BolC5t31775H Brassica oleracea HOM05D004878 ORTHO05D006497 3.0e-13 78.2 71 59.2
Psat1g023920 Pisum sativum HOM05D004878 ORTHO05D006497 6.7e-13 77.0 68 57.4
Hund02535 Selenicereus undatus HOM05D004878 ORTHO05D006497 8.7e-13 76.6 65 64.6
BcaC09g51576 Brassica carinata HOM05D004878 ORTHO05D006497 1.1e-12 76.3 72 61.1
Glyma.06G218300 Glycine max HOM05D004878 ORTHO05D006497 1.5e-12 75.9 71 59.2
HanXRQChr12g0378221 Helianthus annuus HOM05D004878 ORTHO05D006497 1.5e-12 75.9 67 59.7
unitig_27.g24819 Utricularia gibba HOM05D004878 ORTHO05D006497 3.3e-12 74.7 51 70.6
Lj6g0027572 Lotus japonicus HOM05D004878 ORTHO05D006497 5.6e-12 73.9 55 65.5
PGR042G0940 Punica granatum HOM05D004878 ORTHO05D006497 1.3e-11 72.8 65 58.5
ECA246G0899 Erigeron canadensis HOM05D004878 ORTHO05D006497 1.6e-11 72.4 67 59.7
Medtr0151s0030 Medicago truncatula HOM05D004878 ORTHO05D006497 1.6e-11 72.4 73 54.8
Thhalv10009483m.g Eutrema salsugineum HOM05D004878 ORTHO05D006497 2.1e-11 72.0 60 56.7
Atru.chr10.492 Acer truncatum HOM05D004878 ORTHO05D006497 2.8e-11 71.6 52 65.4
SEGI_01553 Sequoiadendron giganteum HOM05D004878 ORTHO05D006497 2.8e-11 71.6 70 52.9
VMungo1309G2006 Vigna mungo HOM05D004878 ORTHO05D006497 2.8e-11 71.6 71 53.5
Zm00001eb207300 Zea mays HOM05D004878 ORTHO05D006497 2.8e-11 71.6 54 61.1
Ca_04469_v3 Cicer arietinum L. HOM05D004878 ORTHO05D006497 6.2e-11 70.5 67 56.7
Os02g0169900 Oryza sativa ssp. japonica HOM05D004878 ORTHO05D006497 8.1e-11 70.1 65 56.9
TAR624G0003 Trochodendron aralioides HOM05D004878 ORTHO05D006497 1.8e-10 68.9 50 66.0
Oeu008725.1 Olea europaea HOM05D004878 ORTHO05D006497 4.0e-10 67.8 49 69.4
CDE05G2830 Ceratophyllum demersum HOM05D004878 ORTHO05D006497 6.9e-10 67.0 71 57.7
Phvul.009G205700 Phaseolus vulgaris HOM05D004878 ORTHO05D006497 6.9e-10 67.0 54 61.1
AagrBONN_evm.TU.Sc2ySwM_228.275 Anthoceros agrestis HOM05D004878 ORTHO05D006497 3.5e-06 54.7 70 44.3


User provided reference genes

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