Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022938 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.2e-62 243.0 122 100.0
CSS0021588 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 7.3e-57 223.8 122 92.6
Rhsim13G0143200 Rhododendron simsii HOM05D004793 ORTHO05D004423 2.0e-22 109.4 143 47.6
Haze_06976 Corylus avellana HOM05D004793 ORTHO05D004423 9.9e-22 107.1 138 50.7
Cfa000070 Carpinus fangiana HOM05D004793 ORTHO05D004423 2.9e-21 105.5 136 49.3
GSVIVG01037785001 Vitis vinifera HOM05D004793 ORTHO05D004423 1.4e-20 103.2 130 52.3
TAR627G0453 Trochodendron aralioides HOM05D004793 ORTHO05D004423 6.0e-19 97.8 130 51.5
GSVIVG01002881001 Vitis vinifera HOM05D000222 ORTHO05D003997 1.0e-18 97.1 134 47.0
Potri.016G009200 Populus trichocarpa HOM05D004793 ORTHO05D004423 8.7e-18 94.0 137 46.0
Manes.03G138300 Manihot esculenta HOM05D004793 ORTHO05D004423 3.3e-17 92.0 130 44.6
Sabra16G0013200 Salix brachista HOM05D004793 ORTHO05D004423 5.6e-17 91.3 136 46.3
PGR004G1083 Punica granatum HOM05D004793 ORTHO05D004423 7.3e-17 90.9 140 45.7
CiPaw.10G079700 Carya illinoinensis HOM05D004793 ORTHO05D004423 2.8e-16 89.0 143 45.5
Nn1g03234 Nelumbo nucifera HOM05D004793 ORTHO05D004423 4.8e-16 88.2 130 46.9
Nn1g07451 Nelumbo nucifera HOM05D004793 ORTHO05D004423 4.8e-16 88.2 130 44.6
Cpa.g.sc2750.2 Carica papaya HOM05D004793 ORTHO05D004423 4.0e-15 85.1 132 47.7
Potri.006G016500 Populus trichocarpa HOM05D004793 ORTHO05D004423 4.0e-15 85.1 139 43.9
Lj2P260T34 Lonicera japonica HOM05D004793 ORTHO05D004423 5.8e-14 81.3 153 37.9
Phvul.006G141500 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 5.8e-14 81.3 146 42.5
Lsat_1_v5_gn_7_13860 Lactuca sativa HOM05D004793 ORTHO05D004423 9.9e-14 80.5 153 39.2
Glyma.15G116700 Glycine max HOM05D004793 ORTHO05D004423 1.7e-13 79.7 142 43.0
Sabra06G0011800 Salix brachista HOM05D004793 ORTHO05D004423 1.7e-13 79.7 140 42.9
Glyma.09G012000 Glycine max HOM05D004793 ORTHO05D004423 2.2e-13 79.3 150 40.7
Potri.001G362000 Populus trichocarpa HOM05D004793 ORTHO05D004423 2.2e-13 79.3 129 41.9
Lj6g0021600 Lotus japonicus HOM05D004793 ORTHO05D004423 3.8e-13 78.6 133 45.1
Prupe.3G201300 Prunus persica HOM05D004793 ORTHO05D004423 3.8e-13 78.6 134 41.8
Thecc.01G191000 Theobroma cacao HOM05D004793 ORTHO05D004423 4.9e-13 78.2 130 42.3
Eucgr.D01438 Eucalyptus grandis HOM05D004793 ORTHO05D004423 6.4e-13 77.8 142 41.5
CiPaw.09G105400 Carya illinoinensis HOM05D004793 ORTHO05D004423 8.4e-13 77.4 154 42.2
QL05p068371 Quercus lobata HOM05D004793 ORTHO05D004423 1.1e-12 77.0 141 43.3
Lalb_Chr15g0088081 Lupinus albus HOM05D004793 ORTHO05D004423 1.4e-12 76.6 147 40.1
Duzib138G1142 Durio zibethinus HOM05D004793 ORTHO05D004423 1.9e-12 76.3 130 40.8
QL05p068872 Quercus lobata HOM05D004793 ORTHO05D004423 1.9e-12 76.3 141 42.6
Psat1g178240 Pisum sativum HOM05D004793 ORTHO05D004423 2.4e-12 75.9 148 40.5
MSTRG.16038 Avicennia marina HOM05D004793 ORTHO05D004423 5.4e-12 74.7 125 42.4
Medtr5g097300 Medicago truncatula HOM05D004793 ORTHO05D004423 9.3e-12 73.9 122 41.0
CiPaw.12G136200 Carya illinoinensis HOM05D004793 ORTHO05D004423 1.2e-11 73.6 131 42.0
Ca_06456_v3 Cicer arietinum L. HOM05D004793 ORTHO05D004423 1.6e-11 73.2 122 41.0
Glyma.17G007500 Glycine max HOM05D004793 ORTHO05D004423 1.6e-11 73.2 136 43.4
Duzib170G0463 Durio zibethinus HOM05D004793 ORTHO05D004423 2.1e-11 72.8 129 41.9
Duzib170G0743 Durio zibethinus HOM05D004793 ORTHO05D004423 2.1e-11 72.8 129 41.9
Medtr2g026510 Medicago truncatula HOM05D004793 ORTHO05D004423 2.1e-11 72.8 152 38.8
Thecc.06G236700 Theobroma cacao HOM05D004793 ORTHO05D004423 2.7e-11 72.4 141 44.0
Eucgr.E03889 Eucalyptus grandis HOM05D004793 ORTHO05D004423 3.5e-11 72.0 135 39.3
Aqoxy1G04226 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 4.6e-11 71.6 135 37.0
A03p49840 Brassica napus HOM05D010379 ORTHO05D012419 4.6e-11 71.6 133 41.4
C07p47900 Brassica napus HOM05D010379 ORTHO05D012419 4.6e-11 71.6 133 41.4
BolC7t45312H Brassica oleracea HOM05D010379 ORTHO05D012419 4.6e-11 71.6 133 41.4
BraA03t14079Z Brassica rapa HOM05D010379 ORTHO05D012419 4.6e-11 71.6 133 41.4
CSS0013569 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 4.6e-11 71.6 129 42.6
Manes.13G062900 Manihot esculenta HOM05D004793 ORTHO05D004423 4.6e-11 71.6 132 41.7
Rhsim04G0014600 Rhododendron simsii HOM05D004793 ORTHO05D004423 4.6e-11 71.6 132 42.4
TPR.G6007 Trifolium pratense HOM05D004793 ORTHO05D004423 4.6e-11 71.6 148 40.5
Thecc.07G019600 Theobroma cacao HOM05D004793 ORTHO05D004423 6.0e-11 71.2 130 43.8
Sabra14G0125700 Salix brachista HOM05D004793 ORTHO05D004423 7.9e-11 70.9 141 38.3
Carub.0007s2506 Capsella rubella HOM05D010379 ORTHO05D012419 1.0e-10 70.5 134 41.0
Phvul.003G085100 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 1.0e-10 70.5 136 39.7
QL08p028591 Quercus lobata HOM05D004793 ORTHO05D004423 1.0e-10 70.5 129 40.3
Aqoxy4G02224 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 1.3e-10 70.1 132 39.4
DCAR_002230 Daucus carota HOM05D004793 ORTHO05D004423 1.8e-10 69.7 149 39.6
Gohir.D13G138400 Gossypium hirsutum HOM05D004793 ORTHO05D004423 1.8e-10 69.7 130 44.6
Gorai.013G155000 Gossypium raimondii HOM05D004793 ORTHO05D004423 1.8e-10 69.7 130 44.6
AT4G16447 Arabidopsis thaliana HOM05D010379 ORTHO05D012419 2.3e-10 69.3 134 40.3
Gohir.A01G087700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 3.0e-10 68.9 131 41.2
Gorai.010G188500 Gossypium raimondii HOM05D004793 ORTHO05D004423 3.0e-10 68.9 152 40.8
Gohir.D06G161500 Gossypium hirsutum HOM05D004793 ORTHO05D004423 3.9e-10 68.6 152 40.8
TPR.G1320 Trifolium pratense HOM05D004793 ORTHO05D004423 3.9e-10 68.6 122 37.7
Duzib192G0740 Durio zibethinus HOM05D004793 ORTHO05D004423 5.1e-10 68.2 142 41.5
Hma1.2p1_0133F.1_g061430 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 5.1e-10 68.2 129 38.8
Potri.014G165000 Populus trichocarpa HOM05D004793 ORTHO05D004423 5.1e-10 68.2 141 37.6
CARHR222830 Cardamine hirsuta HOM05D010379 ORTHO05D012419 6.7e-10 67.8 134 40.3
Ciclev10017917m.g Citrus clementina HOM05D004793 ORTHO05D004423 6.7e-10 67.8 132 37.9
FvH4_6g41090 Fragaria vesca HOM05D004793 ORTHO05D004423 6.7e-10 67.8 133 39.8
FAN14G5076 Fragaria x ananassa HOM05D004793 ORTHO05D004423 6.7e-10 67.8 133 39.1
Gohir.A07G190700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 6.7e-10 67.8 122 38.5
Hma1.2p1_1825F.1_g304390 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 6.7e-10 67.8 129 38.8
VMungo0540G1724 Vigna mungo HOM05D004793 ORTHO05D004423 6.7e-10 67.8 140 40.7
CiPaw.11G201300 Carya illinoinensis HOM05D004793 ORTHO05D004423 1.1e-09 67.0 132 39.4
Lj4g0015289 Lotus japonicus HOM05D004793 ORTHO05D004423 1.1e-09 67.0 137 40.1
Gohir.D01G074100 Gossypium hirsutum HOM05D004793 ORTHO05D004423 1.5e-09 66.6 130 42.3
LjContig00081g0018270 Lotus japonicus HOM05D004793 ORTHO05D004423 1.5e-09 66.6 135 37.8
Glyma.07G266600 Glycine max HOM05D004793 ORTHO05D004423 1.9e-09 66.2 134 41.0
Manes.15G062700 Manihot esculenta HOM05D004793 ORTHO05D004423 1.9e-09 66.2 130 40.8
Prupe.4G007200 Prunus persica HOM05D004793 ORTHO05D004423 1.9e-09 66.2 161 37.9
THA.LOC104815481 Tarenaya hassleriana HOM05D010379 ORTHO05D012419 1.9e-09 66.2 142 37.3
CSS0020838 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 2.5e-09 65.9 126 36.5
CSS0047668 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 2.5e-09 65.9 126 36.5
Gohir.D07G197000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 2.5e-09 65.9 122 37.7
Gorai.001G220800 Gossypium raimondii HOM05D004793 ORTHO05D004423 2.5e-09 65.9 122 37.7
Potri.011G086300 Populus trichocarpa HOM05D004793 ORTHO05D004423 2.5e-09 65.9 105 39.0
AL7G38540 Arabidopsis lyrata HOM05D010379 ORTHO05D012419 3.3e-09 65.5 134 38.8
TPR.G10593 Trifolium pratense HOM05D004793 ORTHO05D004423 5.6e-09 64.7 153 37.3
MSTRG.7149 Avicennia marina HOM05D004793 ORTHO05D004423 7.4e-09 64.3 137 39.4
CANSAT56G2188 Cannabis sativa HOM05D004793 ORTHO05D004423 7.4e-09 64.3 162 37.7
Manes.12G061300 Manihot esculenta HOM05D004793 ORTHO05D004423 9.6e-09 63.9 130 38.5
RcHm_v2.0_Chr2g0156651 Rosa chinensis HOM05D004793 ORTHO05D004423 9.6e-09 63.9 133 39.1
Sed0019930 Sechium edule HOM05D028401 ORTHO05D004423 1.3e-08 63.5 150 34.7
COL.COLO4_08493 Corchorus olitorius HOM05D004793 ORTHO05D004423 1.6e-08 63.2 141 36.2
Sp7g15000 Schrenkiella parvula HOM05D010379 ORTHO05D012419 1.6e-08 63.2 135 39.3
A01p21100 Brassica napus HOM05D010379 ORTHO05D012419 2.1e-08 62.8 133 39.8
BraA01t02021Z Brassica rapa HOM05D010379 ORTHO05D012419 2.1e-08 62.8 133 39.8
Haze_09795 Corylus avellana HOM05D004793 ORTHO05D004423 2.1e-08 62.8 130 39.2
Gohir.A06G155000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 2.1e-08 62.8 152 41.4
Prupe.4G234900 Prunus persica HOM05D004793 ORTHO05D004423 2.1e-08 62.8 138 37.7
PGSC0003DMG400008468 Solanum tuberosum HOM05D018828 ORTHO05D004423 2.1e-08 62.8 131 35.9
BcaNung00193 Brassica carinata HOM05D010379 ORTHO05D012419 2.8e-08 62.4 133 39.1
C01p26370 Brassica napus HOM05D010379 ORTHO05D012419 2.8e-08 62.4 133 39.1
CiPaw.03G278900 Carya illinoinensis HOM05D004793 ORTHO05D004423 2.8e-08 62.4 130 36.9
BcaC09g50349 Brassica carinata HOM05D010379 ORTHO05D012419 3.7e-08 62.0 133 39.1
BolC1t02584H Brassica oleracea HOM05D010379 ORTHO05D012419 3.7e-08 62.0 133 39.1
Cfa020226 Carpinus fangiana HOM05D004793 ORTHO05D004423 4.8e-08 61.6 131 36.6
A08p12490 Brassica napus HOM05D010379 ORTHO05D012419 6.2e-08 61.2 133 36.8
BraA08t33240Z Brassica rapa HOM05D010379 ORTHO05D012419 6.2e-08 61.2 133 36.8
Oeu030108.1 Olea europaea HOM05D026462 ORTHO05D049473 6.2e-08 61.2 107 39.3
PGR142G2586 Punica granatum HOM05D004793 ORTHO05D004423 6.2e-08 61.2 131 39.7
Ciclev10010582m.g Citrus clementina HOM05D004793 ORTHO05D004423 8.1e-08 60.8 125 41.6
Cpa.g.sc211.5 Carica papaya HOM05D004793 ORTHO05D004423 1.1e-07 60.5 144 38.2
DCAR_030858 Daucus carota HOM05D004793 ORTHO05D004423 1.1e-07 60.5 128 39.8
Glyma.02G305500 Glycine max HOM05D004793 ORTHO05D004423 1.4e-07 60.1 128 39.1
Medtr4g133720 Medicago truncatula HOM05D004793 ORTHO05D004423 1.8e-07 59.7 152 35.5
RcHm_v2.0_Chr5g0000811 Rosa chinensis HOM05D020126 ORTHO05D004423 2.4e-07 59.3 160 36.9
Glyma.14G007800 Glycine max HOM05D004793 ORTHO05D004423 3.1e-07 58.9 128 37.5
VMungo1215G0069 Vigna mungo HOM05D004793 ORTHO05D004423 3.1e-07 58.9 136 36.8
Atru.chr6.3360 Acer truncatum HOM05D004793 ORTHO05D004423 4.0e-07 58.5 136 37.5
Rhsim04G0038500 Rhododendron simsii HOM05D004793 ORTHO05D004423 5.3e-07 58.2 127 37.0
arahy.Tifrunner.gnm1.ann1.TPLS1U Arachis hypogaea HOM05D004793 ORTHO05D004423 6.9e-07 57.8 155 35.5
Lalb_Chr04g0247291 Lupinus albus HOM05D004793 ORTHO05D004423 6.9e-07 57.8 122 39.3
Lalb_Chr04g0247481 Lupinus albus HOM05D004793 ORTHO05D004423 6.9e-07 57.8 122 39.3
Psat4g002280 Pisum sativum HOM05D004793 ORTHO05D004423 9.0e-07 57.4 150 34.7
BolC8t48370H Brassica oleracea HOM05D010379 ORTHO05D012419 1.2e-06 57.0 133 36.1
Solyc11g012520.1 Solanum lycopersicum HOM05D018828 ORTHO05D004423 1.2e-06 57.0 139 37.4
SGA_v2.0_scaffold7G03722 Striga asiatica HOM05D026462 ORTHO05D004423 1.2e-06 57.0 133 33.8
arahy.Tifrunner.gnm1.ann1.QXLV0V Arachis hypogaea HOM05D004793 ORTHO05D004423 1.5e-06 56.6 155 34.8
Thhalv10026565m.g Eutrema salsugineum HOM05D010379 ORTHO05D012419 1.5e-06 56.6 132 36.4
Psat2g004520 Pisum sativum HOM05D004793 ORTHO05D004423 1.5e-06 56.6 131 37.4
TWI36G0659 Tripterygium wilfordii HOM05D004793 ORTHO05D004423 1.5e-06 56.6 134 35.1
Actinidia21442 Actinidia chinensis HOM05D004793 ORTHO05D004423 2.0e-06 56.2 90 43.3
VMungo0647G0475 Vigna mungo HOM05D004793 ORTHO05D004423 2.0e-06 56.2 139 35.3
CAN.G696.14 Capsicum annuum HOM05D018828 ORTHO05D004423 2.6e-06 55.8 134 35.8
CsaV3_7G018540 Cucumis sativus L. HOM05D004793 ORTHO05D004423 2.6e-06 55.8 131 35.1
Rhsim06G0174500 Rhododendron simsii HOM05D003210 ORTHO05D000001 2.6e-06 55.8 127 40.2
Cc09_g00630 Coffea canephora HOM05D000222 ORTHO05D003997 4.5e-06 55.1 135 33.3
FAN21G3338 Fragaria x ananassa HOM05D017646 ORTHO05D004423 5.8e-06 54.7 133 33.8
Sed0007585 Sechium edule HOM05D004793 ORTHO05D004423 5.8e-06 54.7 130 34.6
ClCG09G021090 Citrullus lanatus HOM05D004793 ORTHO05D004423 7.6e-06 54.3 133 36.1
Phvul.008G285200 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 1.0e-05 53.9 134 35.1
Sed0008787 Sechium edule HOM05D004793 ORTHO05D004423 1.0e-05 53.9 131 38.2


User provided reference genes

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