Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022865 Camellia sinensis var. sinensis HOM05D000729 ORTHO05D001063 1.5e-37 159.1 83 100.0
CSS0015256 Camellia sinensis var. sinensis HOM05D000729 ORTHO05D001063 2.4e-35 151.8 88 92.0
HanXRQChr17g0567651 Helianthus annuus HOM05D000729 ORTHO05D001063 8.8e-30 133.3 95 76.8
Gohir.D02G117466 Gossypium hirsutum HOM05D000729 ORTHO05D001063 1.1e-29 132.9 96 76.0
HanXRQChr00c0533g0575531 Helianthus annuus HOM05D000729 ORTHO05D001063 1.1e-29 132.9 96 76.0
Gohir.A09G046338 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.6e-29 131.7 95 75.8
HanXRQChr00c0451g0574811 Helianthus annuus HOM05D000729 ORTHO05D001063 2.6e-29 131.7 83 85.5
Nitab4.5_0018575g0010 Nicotiana tabacum HOM05D000729 ORTHO05D001063 7.4e-29 130.2 87 79.3
CSS0038723 Camellia sinensis var. sinensis HOM05D000729 ORTHO05D001063 1.3e-28 129.4 110 67.3
Gohir.A11G180330 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.2e-28 128.6 110 66.4
FAN24G1010 Fragaria x ananassa HOM05D000729 ORTHO05D001063 3.7e-28 127.9 110 65.5
CAN.G1021.15 Capsicum annuum HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
CAN.G1045.7 Capsicum annuum HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
CAN.G1191.10 Capsicum annuum HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
CAN.G1875.3 Capsicum annuum HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
CAN.G21.56 Capsicum annuum HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
CAN.G267.19 Capsicum annuum HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
CAN.G343.3 Capsicum annuum HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
CAN.G547.17 Capsicum annuum HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
Gohir.A05G323796 Gossypium hirsutum HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
HanXRQChr00c0264g0572891 Helianthus annuus HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
HanXRQChr00c0434g0574661 Helianthus annuus HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
HanXRQChr00c0554g0575661 Helianthus annuus HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
HanXRQChr00c0788g0577381 Helianthus annuus HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
HanXRQChr01g0020151 Helianthus annuus HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
HanXRQChr05g0150471 Helianthus annuus HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
HanXRQChr05g0152351 Helianthus annuus HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
HanXRQChr05g0152491 Helianthus annuus HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
HanXRQChr07g0194901 Helianthus annuus HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
HanXRQChr10g0284481 Helianthus annuus HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
HanXRQChr10g0317951 Helianthus annuus HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
HanXRQChr11g0321181 Helianthus annuus HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
HanXRQChr11g0327111 Helianthus annuus HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
HanXRQChr11g0333791 Helianthus annuus HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
HanXRQChr12g0369921 Helianthus annuus HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
HanXRQChr13g0416581 Helianthus annuus HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
HanXRQChr17g0569661 Helianthus annuus HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
HanXRQCPg0580271 Helianthus annuus HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
HanXRQCPg0580451 Helianthus annuus HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
Hma1.2p1_0052F.1_g030753 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
Hma1.2p1_0052F.1_g030756 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
Hma1.2p1_1244F.1_g270050 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
Hma1.2p1_1244F.1_g270060 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
Lsat_1_v5_gn_3_92301 Lactuca sativa HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
Lsat_1_v5_gn_9_18660 Lactuca sativa HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
Lalb_Chr07g0191911 Lupinus albus HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
PSO548G0058 Papaver somniferum HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
PSO548G0065 Papaver somniferum HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
PGR111G0104 Punica granatum HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
PGR111G0125 Punica granatum HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
RcHm_v2.0_Chr5g0051111 Rosa chinensis HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
RcHm_v2.0_CPg0501771 Rosa chinensis HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
RcHm_v2.0_CPg0502641 Rosa chinensis HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
SalBow1G3941 Salvia bowleyana HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
SalBow1G4562 Salvia bowleyana HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
SalBow1G6647 Salvia bowleyana HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
Sed0001647 Sechium edule HOM05D000729 ORTHO05D001063 4.8e-28 127.5 110 66.4
Medtr0002s0310 Medicago truncatula HOM05D000729 ORTHO05D001063 8.2e-28 126.7 111 64.9
QL93p0823_0001 Quercus lobata HOM05D000729 ORTHO05D001063 1.1e-27 126.3 110 66.4
HanXRQChr13g0418941 Helianthus annuus HOM05D000729 ORTHO05D001063 1.4e-27 125.9 110 65.5
RcHm_v2.0_Chr2g0118411 Rosa chinensis HOM05D000729 ORTHO05D001063 1.4e-27 125.9 110 65.5
Solyc11g021090.3 Solanum lycopersicum HOM05D000729 ORTHO05D001063 1.4e-27 125.9 104 69.2
Lalb_Chr05g0227471 Lupinus albus HOM05D000729 ORTHO05D001063 1.8e-27 125.6 110 66.4
Medtr3g035660 Medicago truncatula HOM05D000729 ORTHO05D001063 1.8e-27 125.6 110 64.5
Oeu012825.1 Olea europaea HOM05D000729 ORTHO05D001063 1.8e-27 125.6 111 64.0
Gohir.A02G077402 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.4e-27 125.2 110 65.5
Gorai.003G150500 Gossypium raimondii HOM05D000729 ORTHO05D001063 2.4e-27 125.2 110 65.5
Nn029s41589 Nelumbo nucifera HOM05D000729 ORTHO05D001063 2.4e-27 125.2 110 65.5
Nn206s45070 Nelumbo nucifera HOM05D000729 ORTHO05D001063 2.4e-27 125.2 110 65.5
Nn219s45285 Nelumbo nucifera HOM05D000729 ORTHO05D001063 2.4e-27 125.2 110 65.5
Nn233s45562 Nelumbo nucifera HOM05D000729 ORTHO05D001063 2.4e-27 125.2 110 65.5
Nn269s46006 Nelumbo nucifera HOM05D000729 ORTHO05D001063 2.4e-27 125.2 110 65.5
Solyc00g500146.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 2.4e-27 125.2 110 65.5
arahy.Tifrunner.gnm1.ann1.8IFR8Y Arachis hypogaea HOM05D000729 ORTHO05D001063 3.1e-27 124.8 110 65.5
arahy.Tifrunner.gnm1.ann1.A85ADF Arachis hypogaea HOM05D000729 ORTHO05D001063 3.1e-27 124.8 110 65.5
arahy.Tifrunner.gnm1.ann1.FU0XIN Arachis hypogaea HOM05D000729 ORTHO05D001063 3.1e-27 124.8 110 65.5
arahy.Tifrunner.gnm1.ann1.NGJ0AN Arachis hypogaea HOM05D000729 ORTHO05D001063 3.1e-27 124.8 110 65.5
arahy.Tifrunner.gnm1.ann1.NIYG2M Arachis hypogaea HOM05D000729 ORTHO05D001063 3.1e-27 124.8 110 65.5
arahy.Tifrunner.gnm1.ann1.S6TNUT Arachis hypogaea HOM05D000729 ORTHO05D001063 3.1e-27 124.8 110 65.5
EL10As12g24040 Beta vulgaris HOM05D000729 ORTHO05D001063 3.1e-27 124.8 87 77.0
EL10Ac5g11886 Beta vulgaris HOM05D000729 ORTHO05D001063 5.3e-27 124.0 110 64.5
EL10As15g24113 Beta vulgaris HOM05D000729 ORTHO05D001063 5.3e-27 124.0 110 64.5
CAN.G1148.5 Capsicum annuum HOM05D000729 ORTHO05D001063 5.3e-27 124.0 110 65.5
DCAR_032530 Daucus carota HOM05D000729 ORTHO05D001063 7.0e-27 123.6 110 64.5
DCAR_032546 Daucus carota HOM05D000729 ORTHO05D001063 7.0e-27 123.6 110 64.5
Gohir.D01G101839 Gossypium hirsutum HOM05D000729 ORTHO05D001063 7.0e-27 123.6 110 64.5
Lj2P1238T95 Lonicera japonica HOM05D000729 ORTHO05D001063 7.0e-27 123.6 110 64.5
Lj2P1239T117 Lonicera japonica HOM05D000729 ORTHO05D001063 7.0e-27 123.6 110 64.5
AL1G51260 Arabidopsis lyrata HOM05D000729 ORTHO05D001063 9.1e-27 123.2 110 64.5
AL7G44080 Arabidopsis lyrata HOM05D000729 ORTHO05D001063 9.1e-27 123.2 110 64.5
Phvul.003G089803 Phaseolus vulgaris HOM05D000729 ORTHO05D001063 9.1e-27 123.2 110 63.6
Phvul.009G090284 Phaseolus vulgaris HOM05D000729 ORTHO05D001063 9.1e-27 123.2 110 63.6
AL2G21870 Arabidopsis lyrata HOM05D000729 ORTHO05D001063 2.0e-26 122.1 110 63.6
ATCG00890 Arabidopsis thaliana HOM05D000729 ORTHO05D001063 2.0e-26 122.1 110 63.6
ATCG01250 Arabidopsis thaliana HOM05D000729 ORTHO05D001063 2.0e-26 122.1 110 63.6
Cpa.g.sc2.66 Carica papaya HOM05D000729 ORTHO05D001063 2.0e-26 122.1 110 62.7
Gohir.D06G107201 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.0e-26 122.1 110 64.5
BolSC29t60494H Brassica oleracea HOM05D000729 ORTHO05D001063 4.5e-26 120.9 110 63.6
BolSC29t60537H Brassica oleracea HOM05D000729 ORTHO05D001063 4.5e-26 120.9 110 63.6
BolSC45t60922H Brassica oleracea HOM05D000729 ORTHO05D001063 4.5e-26 120.9 110 63.6
BraSC103t45436Z Brassica rapa HOM05D000729 ORTHO05D001063 4.5e-26 120.9 110 63.6
BraSC25t45897Z Brassica rapa HOM05D000729 ORTHO05D001063 4.5e-26 120.9 110 63.6
BraSC59t46538Z Brassica rapa HOM05D000729 ORTHO05D001063 4.5e-26 120.9 110 63.6
BraSC59t46561Z Brassica rapa HOM05D000729 ORTHO05D001063 4.5e-26 120.9 110 63.6
LjContig00319g0001918 Lotus japonicus HOM05D000729 ORTHO05D001063 4.5e-26 120.9 110 63.6
arahy.Tifrunner.gnm1.ann1.R4S00L Arachis hypogaea HOM05D000729 ORTHO05D001063 7.7e-26 120.2 110 63.6
SabraPtG0004800 Salix brachista HOM05D000729 ORTHO05D001063 7.7e-26 120.2 110 62.7
arahy.Tifrunner.gnm1.ann1.0BYT70 Arachis hypogaea HOM05D000729 ORTHO05D001063 1.0e-25 119.8 111 63.1
HanXRQChr00c0386g0574421 Helianthus annuus HOM05D000729 ORTHO05D001063 1.3e-25 119.4 107 65.4
Gohir.A08G249972 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.9e-25 118.2 110 65.5
Lj4g0028091 Lotus japonicus HOM05D000729 ORTHO05D001063 2.9e-25 118.2 111 62.2
BraSC103t45493Z Brassica rapa HOM05D000729 ORTHO05D001063 1.1e-24 116.3 111 63.1
Lsat_1_v5_gn_4_11820 Lactuca sativa HOM05D000729 ORTHO05D001063 1.9e-24 115.5 110 60.9
Lalb_Chr12g0206641 Lupinus albus HOM05D000729 ORTHO05D001063 3.6e-23 111.3 64 87.5
HanXRQChr00c0572g0575991 Helianthus annuus HOM05D000729 ORTHO05D001063 4.7e-23 110.9 62 90.3
HanXRQChr03g0064311 Helianthus annuus HOM05D000729 ORTHO05D001063 4.7e-23 110.9 71 84.5
HanXRQChr00c0585g0576201 Helianthus annuus HOM05D000729 ORTHO05D001063 1.0e-22 109.8 101 64.4
Nitab4.5_0004929g0010 Nicotiana tabacum HOM05D000729 ORTHO05D001063 2.3e-22 108.6 75 76.0
LjContig00489g0003974 Lotus japonicus HOM05D000729 ORTHO05D001063 3.0e-22 108.2 73 82.2
Migut.D01404 Erythranthe guttata HOM05D000729 ORTHO05D001063 8.8e-22 106.7 60 88.3
BolSC47t61055H Brassica oleracea HOM05D000729 ORTHO05D001063 1.5e-21 105.9 102 61.8
Gorai.010G067500 Gossypium raimondii HOM05D000729 ORTHO05D001063 1.5e-21 105.9 69 81.2
Potri.011G075051 Populus trichocarpa HOM05D000729 ORTHO05D001063 1.5e-21 105.9 64 82.8
CAN.G262.3 Capsicum annuum HOM05D000729 ORTHO05D001063 2.0e-21 105.5 71 81.7
Migut.D01322 Erythranthe guttata HOM05D000729 ORTHO05D001063 5.7e-21 104.0 91 65.9
Nitab4.5_0027450g0010 Nicotiana tabacum HOM05D000729 ORTHO05D001063 1.7e-20 102.4 87 69.0
AL9U12020 Arabidopsis lyrata HOM05D000729 ORTHO05D001063 3.7e-20 101.3 91 64.8
Gorai.003G065500 Gossypium raimondii HOM05D000729 ORTHO05D001063 4.8e-20 100.9 64 79.7
CARHR282330 Cardamine hirsuta HOM05D000729 ORTHO05D001063 8.2e-20 100.1 91 63.7
CARHR282530 Cardamine hirsuta HOM05D000729 ORTHO05D001063 8.2e-20 100.1 91 63.7
Gohir.D11G234166 Gossypium hirsutum HOM05D000729 ORTHO05D001063 8.2e-20 100.1 64 79.7
Gohir.D02G143001 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.4e-19 98.6 64 79.7
Nn241s45687 Nelumbo nucifera HOM05D000729 ORTHO05D001063 4.1e-19 97.8 53 90.6
Gorai.005G160600 Gossypium raimondii HOM05D000729 ORTHO05D001063 5.3e-19 97.4 64 79.7
Solyc10g061887.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 5.3e-19 97.4 91 62.6
Nitab4.5_0005246g0030 Nicotiana tabacum HOM05D000729 ORTHO05D001063 7.0e-19 97.1 96 62.5
Glyma.05G094500 Glycine max HOM05D000729 ORTHO05D001063 5.9e-18 94.0 56 82.1
Solyc04g039790.3 Solanum lycopersicum HOM05D000729 ORTHO05D001063 1.3e-17 92.8 70 72.9
Gohir.D11G278650 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.2e-17 92.0 64 75.0
TPR.G39041 Trifolium pratense HOM05D000729 ORTHO05D001063 2.9e-17 91.7 63 77.8
Lalb_Chr04g0260201 Lupinus albus HOM05D000729 ORTHO05D001063 1.1e-16 89.7 59 76.3
Gorai.007G300800 Gossypium raimondii HOM05D000729 ORTHO05D001063 1.5e-16 89.4 61 75.4
EL10As15g24115 Beta vulgaris HOM05D000729 ORTHO05D001063 1.8e-14 82.4 49 83.7
Solyc09g055840.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 1.8e-14 82.4 45 86.7
Nitab4.5_0000241g0080 Nicotiana tabacum HOM05D000729 ORTHO05D001063 2.3e-14 82.0 96 58.3
Nitab4.5_0001761g0010 Nicotiana tabacum HOM05D000729 ORTHO05D001063 2.3e-14 82.0 57 77.2
Psat0s2011g0040 Pisum sativum HOM05D000729 ORTHO05D001063 3.0e-14 81.6 84 57.1
Glyma.01G201500 Glycine max HOM05D000729 ORTHO05D001063 5.2e-14 80.9 45 86.7
Solyc01g017260.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 6.8e-14 80.5 64 68.8
Solyc12g027820.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 8.8e-14 80.1 45 84.4
EL10As15g24106 Beta vulgaris HOM05D000729 ORTHO05D001063 2.6e-13 78.6 138 40.6
Nitab4.5_0012260g0090 Nicotiana tabacum HOM05D000729 ORTHO05D001063 3.4e-13 78.2 91 58.2
Lsat_1_v5_gn_5_163541 Lactuca sativa HOM05D000729 ORTHO05D001063 4.4e-13 77.8 110 50.0
EL10Ac8g19099 Beta vulgaris HOM05D000729 ORTHO05D001063 2.2e-12 75.5 45 80.0
arahy.Tifrunner.gnm1.ann1.HJG1UD Arachis hypogaea HOM05D000729 ORTHO05D001063 2.8e-12 75.1 95 54.7
Lalb_Chr25g0281841 Lupinus albus HOM05D000729 ORTHO05D001063 3.7e-12 74.7 45 77.8
arahy.Tifrunner.gnm1.ann1.IXN31S Arachis hypogaea HOM05D000729 ORTHO05D001063 8.3e-12 73.6 110 49.1
Migut.D01376 Erythranthe guttata HOM05D000729 ORTHO05D001063 1.2e-10 69.7 39 84.6
HanXRQChr00c0349g0574001 Helianthus annuus HOM05D000729 ORTHO05D001063 1.0e-09 66.6 74 56.8
Solyc02g011910.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 2.9e-09 65.1 38 84.2
BraSC58t46469Z Brassica rapa HOM05D000729 ORTHO05D001063 8.5e-09 63.5 73 54.8
Nitab4.5_0003706g0020 Nicotiana tabacum HOM05D000729 ORTHO05D001063 8.5e-09 63.5 57 66.7
Peaxi162Scf00080g00517 Petunia axillaris HOM05D000729 ORTHO05D001063 8.5e-09 63.5 93 49.5
Nitab4.5_0004471g0070 Nicotiana tabacum HOM05D000729 ORTHO05D001063 1.9e-08 62.4 47 72.3
Nitab4.5_0000149g0250 Nicotiana tabacum HOM05D000729 ORTHO05D013759 5.5e-08 60.8 31 90.3
HanXRQChr00c0747g0577151 Helianthus annuus HOM05D000729 ORTHO05D001063 1.0e-06 56.6 36 86.1
Solyc01g017160.2 Solanum lycopersicum HOM05D000729 ORTHO05D001063 1.0e-06 56.6 32 81.2
SEGI_37255 Sequoiadendron giganteum HOM05D000729 ORTHO05D001063 1.4e-06 56.2 74 48.6
Eucgr.J02732 Eucalyptus grandis HOM05D000729 ORTHO05D001063 5.2e-06 54.3 71 49.3
Solyc09g050069.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 8.8e-06 53.5 56 53.6


User provided reference genes

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