Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022842 Camellia sinensis var. sinensis HOM05D002878 ORTHO05D113605 1.2e-35 152.5 74 100.0
CSS0031288 Camellia sinensis var. sinensis HOM05D002878 ORTHO05D003649 1.2e-09 66.2 33 93.9
arahy.Tifrunner.gnm1.ann1.A5JFP2 Arachis hypogaea HOM05D002878 ORTHO05D003649 2.2e-08 62.0 33 87.9
Glyma.17G174500 Glycine max HOM05D002878 ORTHO05D003649 2.2e-08 62.0 33 87.9
CANSAT01G1312 Cannabis sativa HOM05D002878 ORTHO05D003649 2.9e-08 61.6 33 87.9
Glyma.11G055700 Glycine max HOM05D002878 ORTHO05D003649 3.8e-08 61.2 33 87.9
DCAR_025735 Daucus carota HOM05D002878 ORTHO05D003649 4.9e-08 60.8 33 81.8
arahy.Tifrunner.gnm1.ann1.MHSG3V Arachis hypogaea HOM05D002878 ORTHO05D003649 6.5e-08 60.5 33 84.8
Lj4g0006017 Lotus japonicus HOM05D002878 ORTHO05D003649 6.5e-08 60.5 33 84.8
Dinv39845 Davidia involucrata HOM05D002878 ORTHO05D003649 8.4e-08 60.1 33 87.9
MSTRG.2882 Avicennia marina HOM05D002878 ORTHO05D003649 1.1e-07 59.7 33 84.8
ClCG02G012500 Citrullus lanatus HOM05D002878 ORTHO05D003649 1.1e-07 59.7 33 81.8
MELO3C020872.2 Cucumis melo HOM05D002878 ORTHO05D003649 1.1e-07 59.7 33 81.8
CsaV3_2G016630 Cucumis sativus L. HOM05D002878 ORTHO05D003649 1.1e-07 59.7 33 81.8
Sed0027368 Sechium edule HOM05D002878 ORTHO05D003649 1.1e-07 59.7 33 81.8
Actinidia16481 Actinidia chinensis HOM05D002878 ORTHO05D003649 1.4e-07 59.3 33 84.8
Phvul.002G018700 Phaseolus vulgaris HOM05D002878 ORTHO05D003649 1.4e-07 59.3 33 84.8
Phvul.003G243800 Phaseolus vulgaris HOM05D002878 ORTHO05D003649 1.4e-07 59.3 33 84.8
VMungo0251G0371 Vigna mungo HOM05D002878 ORTHO05D003649 1.4e-07 59.3 33 84.8
Eucgr.I00922 Eucalyptus grandis HOM05D002878 ORTHO05D003649 1.9e-07 58.9 33 84.8
Glyma.01G186202 Glycine max HOM05D002878 ORTHO05D003649 1.9e-07 58.9 33 84.8
Oeu031955.2 Olea europaea HOM05D002878 ORTHO05D003649 1.9e-07 58.9 33 84.8
Os04g0448900 Oryza sativa ssp. japonica HOM05D002878 ORTHO05D003649 1.9e-07 58.9 33 81.8
vmacro05340 Vaccinium macrocarpon HOM05D002878 ORTHO05D003649 1.9e-07 58.9 35 82.9
BcaB04g20078 Brassica carinata HOM05D002878 ORTHO05D003649 2.5e-07 58.5 49 57.1
BcaC04g23187 Brassica carinata HOM05D002878 ORTHO05D003649 2.5e-07 58.5 49 57.1
BcaC04g23188 Brassica carinata HOM05D002878 ORTHO05D003649 2.5e-07 58.5 49 57.1
CAN.G660.9 Capsicum annuum HOM05D002878 ORTHO05D003649 2.5e-07 58.5 33 81.8
Migut.H00431 Erythranthe guttata HOM05D002878 ORTHO05D003649 2.5e-07 58.5 33 81.8
MBI03_g13473_MAGBIO Magnolia biondii HOM05D002878 ORTHO05D003649 2.5e-07 58.5 33 84.8
Rhsim10G0117200 Rhododendron simsii HOM05D002878 ORTHO05D003649 2.5e-07 58.5 33 84.8
Sed0023782 Sechium edule HOM05D002878 ORTHO05D003649 2.5e-07 58.5 33 78.8
HPP92_010971 Vanilla planifolia HOM05D002878 ORTHO05D003649 2.5e-07 58.5 33 78.8
Ah.03g145010 Amaranthus hybridus HOM05D002878 ORTHO05D003649 3.2e-07 58.2 33 78.8
MSTRG.23744 Avicennia marina HOM05D002878 ORTHO05D003649 3.2e-07 58.2 33 81.8
BcaC04g23185 Brassica carinata HOM05D002878 ORTHO05D003649 3.2e-07 58.2 49 57.1
C09p11330 Brassica napus HOM05D002878 ORTHO05D003649 3.2e-07 58.2 49 57.1
BolC9t54020H Brassica oleracea HOM05D002878 ORTHO05D003649 3.2e-07 58.2 49 57.1
Ca_22162_v3 Cicer arietinum L. HOM05D002878 ORTHO05D003649 3.2e-07 58.2 33 81.8
QL06p041333 Quercus lobata HOM05D002878 ORTHO05D003649 3.2e-07 58.2 33 84.8
Zm00001eb006600 Zea mays HOM05D003404 ORTHO05D004052 3.2e-07 58.2 33 78.8
Zm00001eb081460 Zea mays HOM05D002878 ORTHO05D003649 3.2e-07 58.2 33 78.8
Zm00001eb423570 Zea mays HOM05D002878 ORTHO05D003649 3.2e-07 58.2 33 78.8
Atru.chr3.325 Acer truncatum HOM05D002878 ORTHO05D003649 4.2e-07 57.8 33 81.8
AL8G44330 Arabidopsis lyrata HOM05D002878 ORTHO05D003649 4.2e-07 57.8 33 81.8
BcaB02g09963 Brassica carinata HOM05D002878 ORTHO05D003649 4.2e-07 57.8 33 81.8
BcaC06g34781 Brassica carinata HOM05D002878 ORTHO05D003649 4.2e-07 57.8 33 81.8
A07p16900 Brassica napus HOM05D002878 ORTHO05D003649 4.2e-07 57.8 33 81.8
C07p24710 Brassica napus HOM05D002878 ORTHO05D003649 4.2e-07 57.8 33 81.8
BolC7t42992H Brassica oleracea HOM05D002878 ORTHO05D003649 4.2e-07 57.8 33 81.8
BraA07t29416Z Brassica rapa HOM05D002878 ORTHO05D003649 4.2e-07 57.8 33 81.8
CiPaw.01G017900 Carya illinoinensis HOM05D002878 ORTHO05D003649 4.2e-07 57.8 33 81.8
Thhalv10003769m.g Eutrema salsugineum HOM05D002878 ORTHO05D003649 4.2e-07 57.8 33 81.8
SalBow1G5413 Salvia bowleyana HOM05D002878 ORTHO05D003649 4.2e-07 57.8 33 81.8
Sp2g29640 Schrenkiella parvula HOM05D002878 ORTHO05D003649 4.2e-07 57.8 33 81.8
SGA_v2.0_scaffold15G07306 Striga asiatica HOM05D002878 ORTHO05D003649 4.2e-07 57.8 33 81.8
THA.LOC104819235 Tarenaya hassleriana HOM05D002878 ORTHO05D003649 4.2e-07 57.8 33 81.8
GSVIVG01022128001 Vitis vinifera HOM05D002878 ORTHO05D003649 4.2e-07 57.8 33 81.8
AT5G67030 Arabidopsis thaliana HOM05D002878 ORTHO05D003649 5.5e-07 57.4 33 78.8
A09p09580 Brassica napus HOM05D002878 ORTHO05D003649 5.5e-07 57.4 49 57.1
BraA09t36606Z Brassica rapa HOM05D002878 ORTHO05D003649 5.5e-07 57.4 49 57.1
CARHR280630 Cardamine hirsuta HOM05D002878 ORTHO05D003649 5.5e-07 57.4 33 78.8
Cpa.g.sc55.146 Carica papaya HOM05D002878 ORTHO05D003649 5.5e-07 57.4 33 81.8
Lj4C149T12 Lonicera japonica HOM05D002878 ORTHO05D003649 5.5e-07 57.4 33 78.8
Lj2g0007356 Lotus japonicus HOM05D002878 ORTHO05D003649 5.5e-07 57.4 33 81.8
MD15G1284500 Malus domestica HOM05D002878 ORTHO05D003649 5.5e-07 57.4 33 78.8
Medtr5g017350 Medicago truncatula HOM05D002878 ORTHO05D003649 5.5e-07 57.4 33 81.8
Psat2g167360 Pisum sativum HOM05D002878 ORTHO05D003649 5.5e-07 57.4 33 81.8
SalBow5G1901 Salvia bowleyana HOM05D002878 ORTHO05D003649 5.5e-07 57.4 33 78.8
Sc07g0000780 Simmondsia chinensis HOM05D002878 ORTHO05D003649 5.5e-07 57.4 33 78.8
Solyc02g090890.4 Solanum lycopersicum HOM05D002878 ORTHO05D003649 5.5e-07 57.4 33 81.8
Sopen02g035540 Solanum pennellii HOM05D002878 ORTHO05D003649 5.5e-07 57.4 33 81.8
Ca_24768_v3 Cicer arietinum L. HOM05D002878 ORTHO05D003649 7.1e-07 57.0 33 81.8
Haze_15395 Corylus avellana HOM05D002878 ORTHO05D003649 7.1e-07 57.0 33 81.8
Manes.13G124100 Manihot esculenta HOM05D002878 ORTHO05D003649 7.1e-07 57.0 33 81.8
TPR.G19064 Trifolium pratense HOM05D002878 ORTHO05D003649 7.1e-07 57.0 33 81.8
arahy.Tifrunner.gnm1.ann1.5ITW1B Arachis hypogaea HOM05D002878 ORTHO05D003649 9.3e-07 56.6 33 81.8
arahy.Tifrunner.gnm1.ann1.H1IQ00 Arachis hypogaea HOM05D002878 ORTHO05D003649 9.3e-07 56.6 33 81.8
EL10Ac6g15742 Beta vulgaris HOM05D002878 ORTHO05D003649 9.3e-07 56.6 33 78.8
Cfa004025 Carpinus fangiana HOM05D002878 ORTHO05D003649 9.3e-07 56.6 33 81.8
Duzib187G0827 Durio zibethinus HOM05D002878 ORTHO05D003649 9.3e-07 56.6 33 81.8
Eucgr.I00923 Eucalyptus grandis HOM05D002878 ORTHO05D003649 9.3e-07 56.6 33 75.8
Gohir.A11G192600 Gossypium hirsutum HOM05D002878 ORTHO05D003649 9.3e-07 56.6 33 81.8
Gohir.D11G199300 Gossypium hirsutum HOM05D002878 ORTHO05D003649 9.3e-07 56.6 33 81.8
Gorai.007G213500 Gossypium raimondii HOM05D002878 ORTHO05D003649 9.3e-07 56.6 33 81.8
Potri.005G138400 Populus trichocarpa HOM05D002878 ORTHO05D003649 9.3e-07 56.6 33 81.8
Prupe.7G133100 Prunus persica HOM05D002878 ORTHO05D003649 9.3e-07 56.6 33 78.8
SEGI_14380 Sequoiadendron giganteum HOM05D002878 ORTHO05D003649 9.3e-07 56.6 49 55.1
TPR.G30697 Trifolium pratense HOM05D002878 ORTHO05D003649 9.3e-07 56.6 33 78.8
VMungo1215G2613 Vigna mungo HOM05D002878 ORTHO05D003649 9.3e-07 56.6 33 78.8
Aa31LG1G15560 Aethionema arabicum HOM05D002878 ORTHO05D003649 1.2e-06 56.2 33 75.8
Aqoxy5G01226 Aquilegia oxysepala HOM05D002878 ORTHO05D003649 1.2e-06 56.2 33 78.8
Ciclev10025089m.g Citrus clementina HOM05D002878 ORTHO05D003649 1.2e-06 56.2 33 81.8
Sabra07G0039100 Salix brachista HOM05D002878 ORTHO05D003649 1.2e-06 56.2 33 81.8
Duzib147G1525 Durio zibethinus HOM05D002878 ORTHO05D003649 1.6e-06 55.8 33 78.8
Nitab4.5_0002440g0040 Nicotiana tabacum HOM05D002878 ORTHO05D003649 1.6e-06 55.8 33 78.8
Psat0s1281g0080 Pisum sativum HOM05D002878 ORTHO05D003649 1.6e-06 55.8 33 78.8
PGSC0003DMG400004020 Solanum tuberosum HOM05D002878 ORTHO05D003649 1.6e-06 55.8 33 78.8
AUR62001926 Chenopodium quinoa HOM05D002878 ORTHO05D003649 2.1e-06 55.5 33 75.8
AUR62003884 Chenopodium quinoa HOM05D002878 ORTHO05D003649 2.1e-06 55.5 33 75.8
Cc07_g06010 Coffea canephora HOM05D002878 ORTHO05D003649 2.1e-06 55.5 33 75.8
Nitab4.5_0002016g0120 Nicotiana tabacum HOM05D002878 ORTHO05D003649 2.1e-06 55.5 33 75.8
Hund16322 Selenicereus undatus HOM05D002878 ORTHO05D003649 2.1e-06 55.5 33 75.8
Carub.0008s2747 Capsella rubella HOM05D002878 ORTHO05D003649 2.7e-06 55.1 33 75.8
Migut.K00767 Erythranthe guttata HOM05D002878 ORTHO05D003649 2.7e-06 55.1 33 78.8
TAR376G0143 Trochodendron aralioides HOM05D002878 ORTHO05D003649 2.7e-06 55.1 33 78.8
ATR1126G066 Amborella trichopoda HOM05D002878 ORTHO05D003649 3.5e-06 54.7 33 78.8
FvH4_1g16080 Fragaria vesca HOM05D002878 ORTHO05D003649 3.5e-06 54.7 33 75.8
FAN19G0778 Fragaria x ananassa HOM05D002878 ORTHO05D003649 3.5e-06 54.7 33 75.8
FAN23G1030 Fragaria x ananassa HOM05D002878 ORTHO05D003649 3.5e-06 54.7 33 75.8
FAN26G1304 Fragaria x ananassa HOM05D002878 ORTHO05D003649 3.5e-06 54.7 33 75.8
FAN28G1157 Fragaria x ananassa HOM05D002878 ORTHO05D003649 3.5e-06 54.7 33 75.8
Lalb_Chr00c02g0404101 Lupinus albus HOM05D002878 ORTHO05D003649 3.5e-06 54.7 33 78.8
Mapoly0028s0084 Marchantia polymorpha HOM05D002878 ORTHO05D003649 3.5e-06 54.7 33 78.8
PSO170G1040 Papaver somniferum HOM05D002878 ORTHO05D003649 3.5e-06 54.7 33 78.8
PSO210G3686 Papaver somniferum HOM05D002878 ORTHO05D003649 3.5e-06 54.7 33 78.8
Potri.007G044300 Populus trichocarpa HOM05D002878 ORTHO05D003649 3.5e-06 54.7 33 78.8
RcHm_v2.0_Chr2g0105701 Rosa chinensis HOM05D002878 ORTHO05D003649 3.5e-06 54.7 33 75.8
Sabra05G0112100 Salix brachista HOM05D002878 ORTHO05D003649 3.5e-06 54.7 33 78.8
SMO134G0128 Selaginella moellendorffii HOM05D002878 ORTHO05D003649 3.5e-06 54.7 33 72.7
Thecc.01G056500 Theobroma cacao HOM05D002878 ORTHO05D003649 3.5e-06 54.7 33 78.8
TWI09G0920 Tripterygium wilfordii HOM05D002878 ORTHO05D003649 3.5e-06 54.7 33 78.8
BcaC07g42513 Brassica carinata HOM05D002878 ORTHO05D003649 4.6e-06 54.3 33 78.8
COL.COLO4_11419 Corchorus olitorius HOM05D002878 ORTHO05D003649 4.6e-06 54.3 33 75.8
MD02G1172400 Malus domestica HOM05D002878 ORTHO05D003649 4.6e-06 54.3 33 72.7
Nn5g30293 Nelumbo nucifera HOM05D002878 ORTHO05D003649 4.6e-06 54.3 33 75.8
PGR004G0880 Punica granatum HOM05D002878 ORTHO05D003649 4.6e-06 54.3 33 75.8
HanXRQChr12g0378831 Helianthus annuus HOM05D002878 ORTHO05D003649 6.0e-06 53.9 33 72.7
Lsat_1_v5_gn_3_90761 Lactuca sativa HOM05D002878 ORTHO05D003649 6.0e-06 53.9 33 72.7


User provided reference genes

Program Settings