Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022818 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 3.2e-53 211.5 106 100.0
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 2.2e-46 188.7 105 89.5
CSS0046364 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 6.1e-44 180.6 105 86.7
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 4.1e-32 141.4 100 71.0
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 4.6e-31 137.9 100 72.0
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 5.9e-31 137.5 105 66.7
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 6.6e-30 134.0 100 69.0
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 1.5e-29 132.9 100 67.0
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 1.9e-29 132.5 100 67.0
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 3.3e-29 131.7 100 65.0
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 7.3e-29 130.6 105 63.8
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 1.2e-28 129.8 100 65.0
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 2.1e-28 129.0 102 66.7
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 2.1e-28 129.0 100 63.0
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 2.8e-28 128.6 99 64.6
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 3.6e-28 128.3 100 63.0
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 3.6e-28 128.3 100 63.0
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 4.7e-28 127.9 99 66.7
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 1.0e-27 126.7 100 63.0
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 5.2e-27 124.4 96 68.8
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 1.2e-26 123.2 101 58.4
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 2.6e-26 122.1 98 65.3
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 4.4e-26 121.3 99 62.6
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 4.4e-26 121.3 100 61.0
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 7.5e-26 120.6 99 58.6
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 9.8e-26 120.2 102 59.8
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 9.8e-26 120.2 99 61.6
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 9.8e-26 120.2 101 59.4
CSS0030909 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.3e-25 119.8 105 64.8
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 1.3e-25 119.8 100 59.0
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 1.7e-25 119.4 98 61.2
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 1.7e-25 119.4 99 60.6
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 1.7e-25 119.4 98 63.3
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 2.9e-25 118.6 98 60.2
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 2.9e-25 118.6 100 57.0
MELO3C035238.2 Cucumis melo HOM05D004696 ORTHO05D005645 3.7e-25 118.2 102 58.8
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 3.7e-25 118.2 100 58.0
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 6.4e-25 117.5 100 62.0
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 6.4e-25 117.5 99 58.6
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 6.4e-25 117.5 98 59.2
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 8.3e-25 117.1 100 61.0
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 8.3e-25 117.1 100 60.0
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 1.1e-24 116.7 100 57.0
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 1.1e-24 116.7 96 62.5
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 1.4e-24 116.3 100 56.0
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 1.9e-24 115.9 104 53.8
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 1.9e-24 115.9 98 58.2
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 1.9e-24 115.9 102 56.9
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 2.4e-24 115.5 100 56.0
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 3.2e-24 115.2 100 56.0
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 3.2e-24 115.2 103 59.2
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 4.1e-24 114.8 101 56.4
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 4.1e-24 114.8 101 58.4
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 5.4e-24 114.4 102 56.9
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 5.4e-24 114.4 102 57.8
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 5.4e-24 114.4 102 56.9
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 7.0e-24 114.0 104 59.6
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 7.0e-24 114.0 100 56.0
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 7.0e-24 114.0 99 58.6
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 1.2e-23 113.2 101 59.4
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 1.2e-23 113.2 100 59.0
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 1.2e-23 113.2 97 60.8
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 1.2e-23 113.2 100 58.0
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 1.6e-23 112.8 100 54.0
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 3.5e-23 111.7 102 57.8
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 4.6e-23 111.3 101 53.5
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 6.0e-23 110.9 95 56.8
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 6.0e-23 110.9 99 54.5
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 6.0e-23 110.9 104 58.7
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 6.0e-23 110.9 95 61.1
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 7.8e-23 110.5 103 56.3
RcHm_v2.0_Chr4g0427481 Rosa chinensis HOM05D004696 ORTHO05D005645 7.8e-23 110.5 101 55.4
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 7.8e-23 110.5 96 57.3
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 1.3e-22 109.8 101 52.5
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 1.3e-22 109.8 101 52.5
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 1.3e-22 109.8 101 54.5
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 1.7e-22 109.4 101 52.5
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 1.7e-22 109.4 100 52.0
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 2.3e-22 109.0 105 49.5
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 3.0e-22 108.6 101 52.5
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 3.0e-22 108.6 96 56.2
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 3.0e-22 108.6 96 56.2
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 6.6e-22 107.5 101 52.5
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 6.6e-22 107.5 101 54.5
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 6.6e-22 107.5 96 55.2
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 1.1e-21 106.7 101 53.5
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 1.1e-21 106.7 101 49.5
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 1.5e-21 106.3 97 53.6
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 1.9e-21 105.9 96 58.3
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 2.5e-21 105.5 97 54.6
Ca_05928_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 3.3e-21 105.1 101 51.5
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 3.3e-21 105.1 104 50.0
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 3.3e-21 105.1 102 54.9
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 4.3e-21 104.8 105 54.3
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 9.5e-21 103.6 103 49.5
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 1.2e-20 103.2 95 53.7
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 1.2e-20 103.2 101 48.5
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.6e-20 102.8 105 53.3
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 1.6e-20 102.8 98 50.0
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 1.6e-20 102.8 98 50.0
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 2.1e-20 102.4 96 54.2
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 2.8e-20 102.1 98 50.0
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 2.8e-20 102.1 98 50.0
Ca_06214_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 2.8e-20 102.1 101 48.5
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 3.6e-20 101.7 101 52.5
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 4.7e-20 101.3 101 47.5
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 6.2e-20 100.9 100 49.0
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 6.2e-20 100.9 101 52.5
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 8.1e-20 100.5 102 51.0
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 8.1e-20 100.5 98 49.0
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 1.1e-19 100.1 105 49.5
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 1.8e-19 99.4 96 50.0
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 1.8e-19 99.4 101 47.5
ATR1127G170 Amborella trichopoda HOM05D004696 ORTHO05D005645 3.1e-19 98.6 99 53.5
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 4.0e-19 98.2 107 49.5
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 5.2e-19 97.8 95 56.8
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 6.8e-19 97.4 103 49.5
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 1.2e-18 96.7 99 52.5
Nitab4.5_0000745g0120 Nicotiana tabacum HOM05D004696 ORTHO05D005645 1.5e-18 96.3 79 60.8
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 1.5e-18 96.3 95 50.5
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 2.6e-18 95.5 93 50.5
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 3.4e-18 95.1 96 49.0
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 1.3e-17 93.2 96 47.9
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 1.1e-16 90.1 102 52.0
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 2.4e-16 89.0 102 49.0
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 3.2e-16 88.6 69 59.4
HPP92_006011 Vanilla planifolia HOM05D004696 ORTHO05D005645 1.2e-15 86.7 99 43.4
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 5.1e-14 81.3 98 45.9
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 5.1e-14 81.3 98 45.9
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 2.5e-13 79.0 63 61.9
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 3.6e-12 75.1 100 46.0
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 1.1e-11 73.6 93 44.1
Lj2g0010517 Lotus japonicus HOM05D004696 ORTHO05D005645 5.2e-11 71.2 61 62.3
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 2.6e-10 68.9 94 40.4
BcaC04g19932 Brassica carinata HOM05D004696 ORTHO05D005645 2.9e-09 65.5 96 39.6
BolC9t57816H Brassica oleracea HOM05D004696 ORTHO05D005645 3.8e-09 65.1 96 40.6
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 1.9e-08 62.8 99 43.4


User provided reference genes

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