Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022813 Camellia sinensis var. sinensis HOM05D005439 ORTHO05D006793 2.9e-73 278.5 141 100.0
Rhsim04G0164900 Rhododendron simsii HOM05D005439 ORTHO05D006793 2.4e-59 232.3 139 83.5
Actinidia01110 Actinidia chinensis HOM05D005439 ORTHO05D006793 4.9e-57 224.6 139 80.6
vmacro08610 Vaccinium macrocarpon HOM05D005439 ORTHO05D006793 1.3e-54 216.5 132 84.1
Dinv04318 Davidia involucrata HOM05D005439 ORTHO05D006793 2.2e-49 199.1 139 76.3
GSVIVG01014379001 Vitis vinifera HOM05D005439 ORTHO05D006793 1.4e-48 196.4 121 81.0
Manes.15G085800 Manihot esculenta HOM05D005439 ORTHO05D006793 3.2e-48 195.3 126 74.6
Thecc.07G077600 Theobroma cacao HOM05D005439 ORTHO05D006793 4.2e-48 194.9 119 77.3
Duzib170G0676 Durio zibethinus HOM05D005439 ORTHO05D006793 9.3e-48 193.7 125 74.4
Gorai.007G319700 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.6e-47 193.0 121 75.2
Gohir.A08G188900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.7e-47 192.2 121 74.4
Gohir.D08G040300 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.7e-47 192.2 121 74.4
Gohir.D10G173200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.7e-47 192.2 121 74.4
CiPaw.12G120500 Carya illinoinensis HOM05D005439 ORTHO05D006793 3.5e-47 191.8 135 71.1
Gohir.D13G039100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 3.5e-47 191.8 121 74.4
Gohir.D11G168400 Gossypium hirsutum HOM05D005439 ORTHO05D006793 4.6e-47 191.4 121 74.4
Gohir.D11G296600 Gossypium hirsutum HOM05D005439 ORTHO05D006793 4.6e-47 191.4 121 74.4
Dinv30229 Davidia involucrata HOM05D005439 ORTHO05D006793 6.0e-47 191.0 124 79.8
Gohir.A05G386100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 7.9e-47 190.7 121 73.6
Gohir.A11G282786 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.0e-46 190.3 121 74.4
CiPaw.08G146000 Carya illinoinensis HOM05D005439 ORTHO05D006793 2.3e-46 189.1 129 70.5
Gohir.A08G058200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.3e-46 189.1 121 73.6
TAR624G0176 Trochodendron aralioides HOM05D005439 ORTHO05D006793 3.9e-46 188.3 114 78.1
TAR626G0706 Trochodendron aralioides HOM05D005439 ORTHO05D006793 1.5e-45 186.4 122 73.8
Gohir.A11G204100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 3.3e-45 185.3 128 70.3
Peaxi162Scf00998g00023 Petunia axillaris HOM05D005439 ORTHO05D006793 4.8e-44 181.4 137 62.8
TWI15G0142 Tripterygium wilfordii HOM05D005439 ORTHO05D006793 4.8e-44 181.4 128 69.5
Gorai.013G039600 Gossypium raimondii HOM05D005439 ORTHO05D006793 8.1e-44 180.6 121 71.1
COL.COLO4_09427 Corchorus olitorius HOM05D005439 ORTHO05D006793 1.1e-43 180.3 108 77.8
Gorai.010G125600 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.1e-43 180.3 121 71.9
Gorai.013G217100 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.1e-43 180.3 121 71.1
Oeu037221.1 Olea europaea HOM05D005439 ORTHO05D006793 1.4e-43 179.9 121 72.7
Gorai.012G015600 Gossypium raimondii HOM05D005439 ORTHO05D006793 5.3e-43 177.9 121 70.2
Cc04_g05330 Coffea canephora HOM05D005439 ORTHO05D006793 1.2e-42 176.8 126 67.5
CAN.G162.72 Capsicum annuum HOM05D005439 ORTHO05D006793 1.5e-42 176.4 129 65.9
Cpa.g.sc53.123 Carica papaya HOM05D005439 ORTHO05D006793 1.5e-42 176.4 112 75.9
Aqoxy1G02538 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 2.0e-42 176.0 123 68.3
Nitab4.5_0003769g0120 Nicotiana tabacum HOM05D005439 ORTHO05D006793 2.0e-42 176.0 135 63.7
Haze_09469 Corylus avellana HOM05D005439 ORTHO05D006793 3.4e-42 175.3 136 65.4
Gohir.A03G006900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 4.5e-42 174.9 101 79.2
DCAR_000742 Daucus carota HOM05D005439 ORTHO05D006793 1.0e-41 173.7 127 68.5
Sabra11G0107800 Salix brachista HOM05D005439 ORTHO05D006793 1.0e-41 173.7 129 65.9
Glyma.13G278900 Glycine max HOM05D005439 ORTHO05D006793 1.3e-41 173.3 121 66.9
Nn1g04026 Nelumbo nucifera HOM05D005439 ORTHO05D006793 1.3e-41 173.3 149 59.1
ECA240G1812 Erigeron canadensis HOM05D005439 ORTHO05D006793 3.8e-41 171.8 137 61.3
Potri.011G121800 Populus trichocarpa HOM05D005439 ORTHO05D006793 3.8e-41 171.8 124 66.1
PGSC0003DMG400001562 Solanum tuberosum HOM05D005439 ORTHO05D006793 8.4e-41 170.6 132 61.4
CANSAT80G2923 Cannabis sativa HOM05D005439 ORTHO05D006793 1.4e-40 169.9 114 71.9
Lsat_1_v5_gn_9_97181 Lactuca sativa HOM05D005439 ORTHO05D006793 1.4e-40 169.9 128 65.6
Eucgr.I00444 Eucalyptus grandis HOM05D005439 ORTHO05D006793 2.5e-40 169.1 124 68.5
Aqoxy6G01973 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 3.2e-40 168.7 132 63.6
Sopen07g031460 Solanum pennellii HOM05D005439 ORTHO05D006793 4.2e-40 168.3 132 62.1
Medtr2g079590 Medicago truncatula HOM05D005439 ORTHO05D006793 5.5e-40 167.9 120 65.8
Lsat_1_v5_gn_9_97261 Lactuca sativa HOM05D005439 ORTHO05D006793 9.3e-40 167.2 125 64.8
HanXRQChr04g0095481 Helianthus annuus HOM05D005439 ORTHO05D006793 1.2e-39 166.8 124 64.5
Prupe.4G185100 Prunus persica HOM05D005439 ORTHO05D006793 2.1e-39 166.0 127 63.0
Psat5g245080 Pisum sativum HOM05D005439 ORTHO05D006793 2.7e-39 165.6 121 62.8
PSO675G4650 Papaver somniferum HOM05D005439 ORTHO05D006793 3.5e-39 165.2 130 59.2
PGSC0003DMG400012454 Solanum tuberosum HOM05D005439 ORTHO05D006793 3.5e-39 165.2 132 59.8
MD03G1224300 Malus domestica HOM05D005439 ORTHO05D006793 4.6e-39 164.9 116 67.2
RcHm_v2.0_Chr5g0034441 Rosa chinensis HOM05D005439 ORTHO05D006793 1.0e-38 163.7 130 63.1
Lalb_Chr20g0109751 Lupinus albus HOM05D005439 ORTHO05D006793 1.3e-38 163.3 119 63.9
Lj1g0010486 Lotus japonicus HOM05D005439 ORTHO05D006793 2.3e-38 162.5 134 60.4
AUR62034281 Chenopodium quinoa HOM05D005439 ORTHO05D006793 3.0e-38 162.2 114 65.8
arahy.Tifrunner.gnm1.ann1.5K0R4Y Arachis hypogaea HOM05D005439 ORTHO05D006793 5.1e-38 161.4 149 55.0
Lj3g0027158 Lotus japonicus HOM05D005439 ORTHO05D006793 6.7e-38 161.0 131 60.3
RcHm_v2.0_Chr6g0279991 Rosa chinensis HOM05D005439 ORTHO05D006793 9.6e-37 157.1 137 58.4
TPR.G16054 Trifolium pratense HOM05D005439 ORTHO05D006793 1.3e-36 156.8 117 63.2
Solyc07g063290.3 Solanum lycopersicum HOM05D005439 ORTHO05D006793 2.1e-36 156.0 132 59.8
EL10Ac4g09544 Beta vulgaris HOM05D005439 ORTHO05D006793 2.8e-36 155.6 119 62.2
FAN14G2189 Fragaria x ananassa HOM05D005439 ORTHO05D006793 3.4e-34 148.7 137 52.6
AUR62042910 Chenopodium quinoa HOM05D005439 ORTHO05D006793 1.3e-33 146.7 137 54.7
Atru.chr2.2728 Acer truncatum HOM05D005439 ORTHO05D006793 3.8e-33 145.2 132 56.8
Atru.chr2.2729 Acer truncatum HOM05D005439 ORTHO05D006793 3.8e-33 145.2 132 56.8
ClCG11G007090 Citrullus lanatus HOM05D005439 ORTHO05D006793 1.9e-32 142.9 122 63.9
Hund22944 Selenicereus undatus HOM05D005439 ORTHO05D006793 1.9e-32 142.9 136 55.9
MBI18_g17006_MAGBIO Magnolia biondii HOM05D005439 ORTHO05D006793 5.5e-32 141.4 117 63.2
Ciclev10009838m.g Citrus clementina HOM05D005439 ORTHO05D006793 9.3e-32 140.6 96 68.8
Nitab4.5_0010521g0020 Nicotiana tabacum HOM05D005439 ORTHO05D006793 4.6e-31 138.3 135 54.1
Gohir.D09G236700 Gossypium hirsutum HOM05D005439 ORTHO05D006793 6.1e-31 137.9 88 72.7
ATR0019G055 Amborella trichopoda HOM05D005439 ORTHO05D006793 7.9e-31 137.5 123 54.5
arahy.Tifrunner.gnm1.ann1.KJ06EE Arachis hypogaea HOM05D005439 ORTHO05D006793 1.0e-30 137.1 207 40.1
Sc18g0002800 Simmondsia chinensis HOM05D005439 ORTHO05D006793 4.3e-29 131.7 129 54.3
MELO3C008192.2 Cucumis melo HOM05D005439 ORTHO05D006793 3.7e-28 128.6 122 61.5
Gorai.007G117500 Gossypium raimondii HOM05D005439 ORTHO05D006793 4.8e-28 128.3 88 70.5
Migut.H01926 Erythranthe guttata HOM05D005439 ORTHO05D006793 8.2e-28 127.5 116 56.0
Sed0007807 Sechium edule HOM05D005439 ORTHO05D006793 2.4e-27 125.9 122 56.6
PGR031G3442 Punica granatum HOM05D005439 ORTHO05D006793 6.9e-27 124.4 126 51.6
Eucgr.L03232 Eucalyptus grandis HOM05D005439 ORTHO05D006793 5.9e-26 121.3 92 64.1
Potri.001G402700 Populus trichocarpa HOM05D005439 ORTHO05D006793 1.0e-25 120.6 97 60.8
Phvul.005G083100 Phaseolus vulgaris HOM05D005439 ORTHO05D006793 1.3e-25 120.2 125 50.4
unitig_32.g11156 Utricularia gibba HOM05D005439 ORTHO05D006793 1.7e-25 119.8 118 55.1
A02p03560 Brassica napus HOM05D005439 ORTHO05D006793 3.8e-25 118.6 123 48.8
PSO541G3703 Papaver somniferum HOM05D005439 ORTHO05D006793 5.0e-25 118.2 90 57.8
THA.LOC104815550 Tarenaya hassleriana HOM05D005439 ORTHO05D006793 8.5e-25 117.5 125 49.6
CARHR090470 Cardamine hirsuta HOM05D005439 ORTHO05D006793 1.4e-24 116.7 123 48.8
HPP92_001754 Vanilla planifolia HOM05D005439 ORTHO05D006793 4.2e-24 115.2 122 49.2
BolC2t06755H Brassica oleracea HOM05D005439 ORTHO05D006793 5.5e-24 114.8 124 48.4
BraA02t05327Z Brassica rapa HOM05D005439 ORTHO05D006793 7.2e-24 114.4 123 48.0
C02p08370 Brassica napus HOM05D005439 ORTHO05D006793 4.6e-23 111.7 124 47.6
SalBow7G3564 Salvia bowleyana HOM05D005439 ORTHO05D006793 4.6e-23 111.7 124 50.0
BcaB08g36849 Brassica carinata HOM05D005439 ORTHO05D006793 7.9e-23 110.9 125 45.6
QL08p019954 Quercus lobata HOM05D005439 ORTHO05D006793 1.4e-22 110.2 81 66.7
Zm00001eb001470 Zea mays HOM05D005439 ORTHO05D006793 1.8e-22 109.8 110 54.5
Carub.0003s1515 Capsella rubella HOM05D005439 ORTHO05D006793 8.8e-22 107.5 112 51.8
C09p60700 Brassica napus HOM05D005439 ORTHO05D006793 1.5e-21 106.7 125 44.8
Os04g0530000 Oryza sativa ssp. japonica HOM05D005439 ORTHO05D006793 9.7e-21 104.0 109 52.3
Sp6g27700 Schrenkiella parvula HOM05D005439 ORTHO05D006793 9.7e-21 104.0 116 44.8
MD11G1243100 Malus domestica HOM05D005439 ORTHO05D006793 1.7e-20 103.2 108 48.1
AT3G15420 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 2.2e-20 102.8 122 46.7
AL3G27970 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 2.8e-20 102.4 109 50.5
Aa31LG8G2660 Aethionema arabicum HOM05D005439 ORTHO05D006793 1.1e-19 100.5 124 47.6
RcHm_v2.0_Chr2g0143371 Rosa chinensis HOM05D005439 ORTHO05D006793 1.1e-19 100.5 74 66.2
Gorai.004G187000 Gossypium raimondii HOM05D005439 ORTHO05D006793 2.4e-19 99.4 62 75.8
Zm00001eb403870 Zea mays HOM05D005439 ORTHO05D006793 3.1e-19 99.0 110 48.2
AT1G80745 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 5.3e-19 98.2 121 43.0
Thhalv10021755m.g Eutrema salsugineum HOM05D005439 ORTHO05D006793 9.1e-19 97.4 109 45.0
AL2G40660 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 3.4e-18 95.5 127 44.1
TPR.G39010 Trifolium pratense HOM05D005439 ORTHO05D006793 7.7e-18 94.4 71 60.6
CDE08G1297 Ceratophyllum demersum HOM05D005439 ORTHO05D006793 1.3e-17 93.6 75 58.7
Sed0010430 Sechium edule HOM05D005439 ORTHO05D006793 1.3e-17 93.6 94 53.2
Carub.0002s2680 Capsella rubella HOM05D005439 ORTHO05D006793 6.5e-17 91.3 64 60.9
VMungo1215G1396 Vigna mungo HOM05D005439 ORTHO05D006793 1.4e-16 90.1 101 49.5
Mapoly0076s0011 Marchantia polymorpha HOM05D005439 ORTHO05D006793 3.0e-14 82.4 130 36.2
AagrBONN_evm.TU.Sc2ySwM_369.384 Anthoceros agrestis HOM05D005439 ORTHO05D006793 8.8e-14 80.9 120 39.2
Pp3c23_5480 Physcomitrium patens HOM05D005439 ORTHO05D006793 4.4e-13 78.6 121 37.2
QL08p019959 Quercus lobata HOM05D005439 ORTHO05D006793 1.3e-12 77.0 46 76.1
BcaC03g18493 Brassica carinata HOM05D005439 ORTHO05D006793 6.3e-12 74.7 95 43.2
AUR62029363 Chenopodium quinoa HOM05D005439 ORTHO05D006793 1.2e-10 70.5 48 64.6
FAN09G1944 Fragaria x ananassa HOM05D005439 ORTHO05D006793 2.6e-10 69.3 49 65.3
FAN02G1859 Fragaria x ananassa HOM05D005439 ORTHO05D006793 3.5e-10 68.9 49 65.3
SGA_v2.0_scaffold4G02008 Striga asiatica HOM05D000346 ORTHO05D000326 2.9e-09 65.9 56 55.4
CsaV3_2G034140 Cucumis sativus L. HOM05D003646 ORTHO05D004503 3.8e-09 65.5 56 66.1
RcHm_v2.0_Chr5g0034431 Rosa chinensis HOM05D005439 ORTHO05D006793 8.5e-09 64.3 50 60.0
BolC9t58901H Brassica oleracea HOM05D005439 ORTHO05D006793 8.0e-07 57.8 89 37.1
BcaC04g18875 Brassica carinata HOM05D005439 ORTHO05D006793 1.0e-06 57.4 89 37.1
SMO293G0007 Selaginella moellendorffii HOM05D005439 ORTHO05D006793 1.0e-06 57.4 45 62.2
FAN09G3549 Fragaria x ananassa HOM05D005439 ORTHO05D006793 6.7e-06 54.7 50 46.0


User provided reference genes

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