Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022805 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 7.2e-110 400.6 203 100.0
CSS0003416 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.2e-91 340.1 201 86.6
CSS0021388 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 5.7e-91 337.8 201 86.1
Actinidia31203 Actinidia chinensis HOM05D004366 ORTHO05D005058 4.9e-90 334.7 203 83.7
Sc11g0001840 Simmondsia chinensis HOM05D004366 ORTHO05D005058 2.3e-84 315.8 201 78.6
Rhsim12G0062000 Rhododendron simsii HOM05D004366 ORTHO05D005058 3.1e-84 315.5 201 80.1
Manes.01G186800 Manihot esculenta HOM05D004366 ORTHO05D005058 4.4e-83 311.6 203 78.3
Atru.chr11.1817 Acer truncatum HOM05D004366 ORTHO05D005058 5.8e-83 311.2 201 78.6
SalBow2G0488 Salvia bowleyana HOM05D004366 ORTHO05D005058 5.8e-83 311.2 199 76.9
QL03p064520 Quercus lobata HOM05D004366 ORTHO05D005058 4.9e-82 308.1 199 78.4
Eucgr.B03429 Eucalyptus grandis HOM05D004366 ORTHO05D005058 1.4e-81 306.6 203 76.4
Nitab4.5_0000141g0240 Nicotiana tabacum HOM05D004366 ORTHO05D005058 1.4e-81 306.6 201 77.1
Lj3C1038T15 Lonicera japonica HOM05D004366 ORTHO05D005058 2.4e-81 305.8 203 75.4
Cpa.g.sc128.8 Carica papaya HOM05D004366 ORTHO05D005058 4.1e-81 305.1 199 77.9
Peaxi162Scf00026g03112 Petunia axillaris HOM05D004366 ORTHO05D005058 7.0e-81 304.3 203 77.3
Ciclev10032771m.g Citrus clementina HOM05D004366 ORTHO05D005058 1.2e-80 303.5 199 76.9
Cc11_g13140 Coffea canephora HOM05D004366 ORTHO05D005058 1.6e-80 303.1 203 75.4
Sopen01g006640 Solanum pennellii HOM05D004366 ORTHO05D005058 2.0e-80 302.8 201 75.6
Prupe.1G272700 Prunus persica HOM05D004366 ORTHO05D005058 2.7e-80 302.4 199 76.9
TWI12G0004 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 3.5e-80 302.0 203 77.3
Aqoxy3G03355 Aquilegia oxysepala HOM05D004366 ORTHO05D005058 6.0e-80 301.2 198 74.2
ClCG05G024360 Citrullus lanatus HOM05D004366 ORTHO05D005058 6.0e-80 301.2 200 77.0
MELO3C012087.2 Cucumis melo HOM05D004366 ORTHO05D005058 1.0e-79 300.4 199 77.9
Thecc.02G350500 Theobroma cacao HOM05D004366 ORTHO05D005058 1.0e-79 300.4 200 76.0
Solyc01g010810.4 Solanum lycopersicum HOM05D004366 ORTHO05D005058 2.3e-79 299.3 201 74.6
EL10Ac6g13190 Beta vulgaris HOM05D004366 ORTHO05D005058 3.9e-79 298.5 198 74.7
CiPaw.06G083500 Carya illinoinensis HOM05D004366 ORTHO05D005058 8.6e-79 297.4 203 74.9
SGA_v2.0_scaffold20G09275 Striga asiatica HOM05D004366 ORTHO05D005058 1.1e-78 297.0 201 74.1
MD13G1073400 Malus domestica HOM05D004366 ORTHO05D005058 3.3e-78 295.4 199 75.4
MD16G1074700 Malus domestica HOM05D004366 ORTHO05D005058 5.6e-78 294.7 199 75.4
PGSC0003DMG400006558 Solanum tuberosum HOM05D004366 ORTHO05D005058 5.6e-78 294.7 201 73.6
Nn4g23131 Nelumbo nucifera HOM05D004366 ORTHO05D005058 7.3e-78 294.3 199 75.9
Migut.L01306 Erythranthe guttata HOM05D004366 ORTHO05D005058 1.2e-77 293.5 199 72.9
Sed0027317 Sechium edule HOM05D004366 ORTHO05D005058 1.6e-77 293.1 199 75.9
CsaV3_5G032600 Cucumis sativus L. HOM05D004366 ORTHO05D005058 2.1e-77 292.7 199 76.9
FAN12G0862 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.1e-77 292.7 199 75.9
FvH4_4g31510 Fragaria vesca HOM05D004366 ORTHO05D005058 2.8e-77 292.4 199 75.9
Gohir.D13G074000 Gossypium hirsutum HOM05D004366 ORTHO05D005058 6.2e-77 291.2 201 70.1
Hund05888 Selenicereus undatus HOM05D004366 ORTHO05D005058 8.1e-77 290.8 198 74.7
Gorai.013G084600 Gossypium raimondii HOM05D004366 ORTHO05D005058 1.1e-76 290.4 201 70.1
Lj2g0005379 Lotus japonicus HOM05D004366 ORTHO05D005058 1.1e-76 290.4 200 74.5
MBI02_g23682_MAGBIO Magnolia biondii HOM05D004366 ORTHO05D005058 1.4e-76 290.0 198 73.2
Oeu028302.2 Olea europaea HOM05D004366 ORTHO05D005058 1.8e-76 289.7 204 74.0
Gohir.A13G073900 Gossypium hirsutum HOM05D004366 ORTHO05D005058 3.1e-76 288.9 201 69.7
CAN.G473.145 Capsicum annuum HOM05D004366 ORTHO05D005058 4.0e-76 288.5 198 73.7
Glyma.01G045700 Glycine max HOM05D004366 ORTHO05D005058 8.9e-76 287.3 198 73.2
Glyma.02G106000 Glycine max HOM05D004366 ORTHO05D005058 8.9e-76 287.3 198 72.7
FAN17G2550 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.6e-75 285.8 199 74.4
THA.LOC104822115 Tarenaya hassleriana HOM05D004366 ORTHO05D005058 4.4e-75 285.0 199 73.4
TWI53G1314 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 4.4e-75 285.0 201 73.6
Medtr8g463620 Medicago truncatula HOM05D004366 ORTHO05D005058 5.8e-75 284.6 198 72.2
RcHm_v2.0_Chr4g0440001 Rosa chinensis HOM05D004366 ORTHO05D005058 5.8e-75 284.6 199 73.4
A07p31430 Brassica napus HOM05D004366 ORTHO05D005058 9.8e-75 283.9 202 70.8
BraA07t30778Z Brassica rapa HOM05D004366 ORTHO05D005058 9.8e-75 283.9 202 70.8
Thhalv10019150m.g Eutrema salsugineum HOM05D004366 ORTHO05D005058 9.8e-75 283.9 199 70.4
Ca_04775_v3 Cicer arietinum L. HOM05D004366 ORTHO05D005058 1.7e-74 283.1 198 72.2
COL.COLO4_22987 Corchorus olitorius HOM05D004366 ORTHO05D005058 2.2e-74 282.7 198 72.2
Medtr5g039690 Medicago truncatula HOM05D004366 ORTHO05D005058 2.9e-74 282.3 198 71.7
C06p36720 Brassica napus HOM05D004366 ORTHO05D005058 4.9e-74 281.6 202 70.3
BolC6t38782H Brassica oleracea HOM05D004366 ORTHO05D005058 8.3e-74 280.8 202 69.8
Lalb_Chr04g0256161 Lupinus albus HOM05D004366 ORTHO05D005058 8.3e-74 280.8 189 74.6
Phvul.002G086500 Phaseolus vulgaris HOM05D004366 ORTHO05D005058 8.3e-74 280.8 198 71.2
Sabra13G0046200 Salix brachista HOM05D004366 ORTHO05D005058 1.1e-73 280.4 199 70.4
AUR62026617 Chenopodium quinoa HOM05D004366 ORTHO05D005058 2.4e-73 279.3 193 74.1
Aa31LG4G11100 Aethionema arabicum HOM05D004366 ORTHO05D005058 3.2e-73 278.9 198 68.7
Sp5g24810 Schrenkiella parvula HOM05D004366 ORTHO05D005058 4.1e-73 278.5 203 68.5
AL2G28850 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 9.2e-73 277.3 203 68.0
Nitab4.5_0005950g0010 Nicotiana tabacum HOM05D004366 ORTHO05D005058 9.2e-73 277.3 201 72.6
ATR0564G205 Amborella trichopoda HOM05D004366 ORTHO05D005058 1.2e-72 276.9 198 70.7
BcaC08g46415 Brassica carinata HOM05D004366 ORTHO05D005058 2.1e-72 276.2 203 67.0
BolC6t39421H Brassica oleracea HOM05D004366 ORTHO05D005058 2.1e-72 276.2 203 67.0
FAN15G0746 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.1e-72 276.2 199 72.9
Carub.0002s1634 Capsella rubella HOM05D004366 ORTHO05D005058 2.7e-72 275.8 203 68.0
Lsat_1_v5_gn_8_52741 Lactuca sativa HOM05D004366 ORTHO05D005058 2.7e-72 275.8 191 72.3
BcaB03g14744 Brassica carinata HOM05D004366 ORTHO05D005058 3.5e-72 275.4 203 67.0
A07p36060 Brassica napus HOM05D004366 ORTHO05D005058 4.6e-72 275.0 203 66.5
BraA07t31186Z Brassica rapa HOM05D004366 ORTHO05D005058 4.6e-72 275.0 203 66.5
CARHR062670 Cardamine hirsuta HOM05D004366 ORTHO05D005058 6.0e-72 274.6 203 66.5
FAN24G0452 Fragaria x ananassa HOM05D004366 ORTHO05D005058 6.0e-72 274.6 199 71.4
PSO339G1196 Papaver somniferum HOM05D004366 ORTHO05D005058 6.0e-72 274.6 198 69.2
AT1G69680 Arabidopsis thaliana HOM05D004366 ORTHO05D005058 7.8e-72 274.2 203 67.0
C06p43460 Brassica napus HOM05D004366 ORTHO05D005058 7.8e-72 274.2 203 66.5
PGR102G1003 Punica granatum HOM05D004366 ORTHO05D005058 1.7e-71 273.1 198 70.7
FvH4_2g13310 Fragaria vesca HOM05D004366 ORTHO05D005058 2.3e-71 272.7 200 71.5
PSO384G0235 Papaver somniferum HOM05D004366 ORTHO05D005058 2.3e-71 272.7 198 69.2
Psat0s2341g0040 Pisum sativum HOM05D004366 ORTHO05D005058 2.3e-71 272.7 198 70.7
arahy.Tifrunner.gnm1.ann1.5V6A51 Arachis hypogaea HOM05D004366 ORTHO05D005058 3.9e-71 271.9 209 67.5
FAN27G2895 Fragaria x ananassa HOM05D004366 ORTHO05D005058 5.1e-71 271.6 200 72.5
Hma1.2p1_0598F.1_g186660 Hydrangea macrophylla HOM05D004366 ORTHO05D005058 5.1e-71 271.6 333 50.2
Os04g0459600 Oryza sativa ssp. japonica HOM05D004366 ORTHO05D005058 8.6e-71 270.8 198 67.7
AUR62005764 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.1e-70 270.4 180 76.7
AUR62034912 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.1e-70 270.4 179 76.5
Sp3g28750 Schrenkiella parvula HOM05D004366 ORTHO05D005058 1.1e-70 270.4 206 65.5
Haze_12025 Corylus avellana HOM05D004366 ORTHO05D005058 1.9e-70 269.6 201 72.1
BcaB03g15490 Brassica carinata HOM05D004366 ORTHO05D005058 9.5e-70 267.3 198 69.2
Zm00001eb080830 Zea mays HOM05D004366 ORTHO05D005058 1.6e-69 266.5 198 65.7
HanXRQChr08g0210471 Helianthus annuus HOM05D004366 ORTHO05D005058 8.1e-69 264.2 191 69.6
Oeu013622.3 Olea europaea HOM05D004366 ORTHO05D005058 1.8e-68 263.1 205 67.8
ECA233G4070 Erigeron canadensis HOM05D004366 ORTHO05D005058 6.8e-68 261.2 191 69.1
unitig_22.g6909 Utricularia gibba HOM05D004366 ORTHO05D005058 8.9e-68 260.8 201 67.7
HanXRQChr12g0362541 Helianthus annuus HOM05D004366 ORTHO05D005058 1.2e-67 260.4 193 68.4
PSO675G4203 Papaver somniferum HOM05D004366 ORTHO05D005058 2.0e-67 259.6 198 66.2
Potri.013G049900 Populus trichocarpa HOM05D004366 ORTHO05D005058 2.2e-66 256.1 181 71.8
AUR62028793 Chenopodium quinoa HOM05D004366 ORTHO05D005058 6.4e-66 254.6 193 69.4
arahy.Tifrunner.gnm1.ann1.QXP3RB Arachis hypogaea HOM05D004366 ORTHO05D005058 7.1e-65 251.1 178 70.8
BcaC08g45875 Brassica carinata HOM05D004366 ORTHO05D005058 7.1e-65 251.1 205 64.9
CANSAT25G1390 Cannabis sativa HOM05D004366 ORTHO05D005058 2.1e-64 249.6 199 64.8
CANSAT54G1616 Cannabis sativa HOM05D004366 ORTHO05D005058 2.1e-64 249.6 199 64.3
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 2.7e-64 249.2 185 64.9
Aa31sc15G10 Aethionema arabicum HOM05D004366 ORTHO05D005058 6.0e-64 248.1 176 71.6
AL7G43580 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 2.3e-63 246.1 184 66.8
SEGI_03925 Sequoiadendron giganteum HOM05D004366 ORTHO05D005058 3.0e-63 245.7 194 60.8
GSVIVG01020010001 Vitis vinifera HOM05D004366 ORTHO05D005058 3.0e-63 245.7 168 78.0
Duzib248G1524 Durio zibethinus HOM05D004366 ORTHO05D005058 5.1e-63 245.0 200 63.5
VMungo1215G0984 Vigna mungo HOM05D004366 ORTHO05D005058 5.1e-63 245.0 179 70.4
Ah.03g135200 Amaranthus hybridus HOM05D004366 ORTHO05D005058 1.5e-62 243.4 198 64.1
vmacro01244 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 2.5e-62 242.7 251 56.2
SGA_v2.0_scaffold53G19387 Striga asiatica HOM05D004366 ORTHO05D005058 1.1e-60 237.3 238 57.6
Aa31LG9G5650 Aethionema arabicum HOM05D004366 ORTHO05D005058 2.0e-59 233.0 219 58.4
Cfa008996 Carpinus fangiana HOM05D004366 ORTHO05D005058 1.3e-55 220.3 220 57.3
FAN22G2022 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.7e-55 219.9 234 56.0
TPR.G39101 Trifolium pratense HOM05D004366 ORTHO05D005058 5.3e-52 208.4 167 65.9
AagrBONN_evm.TU.Sc2ySwM_344.5131 Anthoceros agrestis HOM05D004366 ORTHO05D005058 1.2e-51 207.2 193 54.9
vmacro01242 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 7.1e-49 198.0 225 52.9
Pp3c9_14930 Physcomitrium patens HOM05D004366 ORTHO05D005058 2.1e-48 196.4 191 51.3
Dinv16634 Davidia involucrata HOM05D004366 ORTHO05D005058 1.7e-47 193.4 112 85.7
DCAR_027406 Daucus carota HOM05D002775 ORTHO05D005058 5.1e-47 191.8 128 78.1
SMO147G0050 Selaginella moellendorffii HOM05D004366 ORTHO05D005058 8.1e-45 184.5 192 51.6
SalBow2G3183 Salvia bowleyana HOM05D004366 ORTHO05D005058 1.3e-42 177.2 149 63.1
CBR_g17957 Chara braunii HOM05D004366 ORTHO05D005058 6.4e-42 174.9 191 47.6
TAR629G2773 Trochodendron aralioides HOM05D004366 ORTHO05D005058 2.1e-40 169.9 112 72.3
arahy.Tifrunner.gnm1.ann1.4LW61L Arachis hypogaea HOM05D004366 ORTHO05D005058 3.5e-40 169.1 120 69.2
AagrBONN_evm.TU.Sc2ySwM_362.1786 Anthoceros agrestis HOM05D004366 ORTHO05D005058 6.7e-39 164.9 185 49.2
Pp3c15_14240 Physcomitrium patens HOM05D004366 ORTHO05D005058 5.5e-33 145.2 160 51.9
MD11G1061500 Malus domestica HOM05D004366 ORTHO05D005058 1.6e-32 143.7 112 66.1
CSS0042124 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 4.6e-32 142.1 83 83.1
CSS0000370 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.8e-31 140.2 83 83.1
Potri.019G023800 Populus trichocarpa HOM05D004366 ORTHO05D005058 3.9e-31 139.0 93 68.8
MSTRG.695 Avicennia marina HOM05D004366 ORTHO05D005058 1.1e-30 137.5 85 77.6
Mapoly0113s0045 Marchantia polymorpha HOM05D004366 ORTHO05D005058 5.7e-30 135.2 204 40.2
Lj6A789T49 Lonicera japonica HOM05D004366 ORTHO05D005058 1.1e-28 131.0 85 76.5
MCO13G325 Micromonas commoda HOM05D004366 ORTHO05D005058 1.0e-26 124.4 209 37.3
arahy.Tifrunner.gnm1.ann1.MY0RSE Arachis hypogaea HOM05D004366 ORTHO05D005058 6.5e-26 121.7 103 61.2
arahy.Tifrunner.gnm1.ann1.D4KK35 Arachis hypogaea HOM05D004366 ORTHO05D005058 3.2e-25 119.4 123 53.7
arahy.Tifrunner.gnm1.ann1.J913Y5 Arachis hypogaea HOM05D004366 ORTHO05D005058 2.7e-24 116.3 80 70.0
Rhsim11G0057700 Rhododendron simsii HOM05D004366 ORTHO05D005058 1.5e-22 110.5 73 78.1
CAN.G154.11 Capsicum annuum HOM05D004366 ORTHO05D005058 9.7e-22 107.8 130 48.5
PGSC0003DMG400015729 Solanum tuberosum HOM05D004366 ORTHO05D005058 4.8e-21 105.5 101 57.4
FAN07G2952 Fragaria x ananassa HOM05D004366 ORTHO05D005058 3.1e-20 102.8 71 71.8
arahy.Tifrunner.gnm1.ann1.N9R1JE Arachis hypogaea HOM05D004366 ORTHO05D005058 2.2e-18 96.7 77 64.9
arahy.Tifrunner.gnm1.ann1.8CQ436 Arachis hypogaea HOM05D004366 ORTHO05D005058 1.1e-17 94.4 68 70.6
BcaC07g37109 Brassica carinata HOM05D004366 ORTHO05D005058 3.6e-16 89.4 76 57.9
PRCOL_00002884 Prasinoderma coloniale HOM05D004366 ORTHO05D005058 3.6e-16 89.4 197 32.5
C08p04780 Brassica napus HOM05D004366 ORTHO05D005058 7.9e-16 88.2 72 59.7
BolC8t47277H Brassica oleracea HOM05D004366 ORTHO05D005058 1.5e-14 84.0 77 57.1
Cre05.g244850 Chlamydomonas reinhardtii HOM05D004366 ORTHO05D005058 2.5e-14 83.2 193 32.6
arahy.Tifrunner.gnm1.ann1.NKT7G2 Arachis hypogaea HOM05D004366 ORTHO05D005058 1.3e-13 80.9 113 46.0
Lsat_1_v5_gn_1_103541 Lactuca sativa HOM05D004366 ORTHO05D005058 1.7e-13 80.5 103 43.7
SalBow1G5797 Salvia bowleyana HOM05D004366 ORTHO05D005058 2.6e-11 73.2 45 75.6
CANSAT54G0841 Cannabis sativa HOM05D001400 ORTHO05D001795 1.1e-09 67.8 49 63.3
AUR62028525 Chenopodium quinoa HOM05D004366 ORTHO05D000022 1.8e-07 60.5 44 63.6
PSO339G3282 Papaver somniferum HOM05D000073 ORTHO05D000033 2.3e-07 60.1 53 60.4
TAR624G1239 Trochodendron aralioides HOM05D049658 ORTHO05D051498 3.0e-07 59.7 42 71.4
TAR626G1697 Trochodendron aralioides HOM05D049658 ORTHO05D051498 2.6e-06 56.6 40 72.5
A08p04480 Brassica napus HOM05D004366 ORTHO05D005058 4.4e-06 55.8 72 40.3
Atru.chr9.1643 Acer truncatum HOM05D004366 ORTHO05D005058 7.4e-06 55.1 44 56.8


User provided reference genes

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