Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022801 Camellia sinensis var. sinensis HOM05D005280 ORTHO05D006253 1.7e-105 386.7 322 100.0
ECA236G4327 Erigeron canadensis HOM05D005280 ORTHO05D006253 6.1e-87 325.1 304 83.9
Actinidia39510 Actinidia chinensis HOM05D005280 ORTHO05D006253 1.0e-86 324.3 304 92.1
HanXRQChr05g0139841 Helianthus annuus HOM05D005280 ORTHO05D006253 3.0e-86 322.8 304 82.9
Lsat_1_v5_gn_7_24160 Lactuca sativa HOM05D005280 ORTHO05D006253 4.4e-85 318.9 302 89.1
DCAR_007943 Daucus carota HOM05D005280 ORTHO05D006253 4.1e-83 312.4 304 89.5
Lj1A206T60 Lonicera japonica HOM05D005280 ORTHO05D006253 7.0e-83 311.6 305 91.5
Lalb_Chr20g0117481 Lupinus albus HOM05D005280 ORTHO05D006253 2.5e-80 303.1 307 78.8
FAN16G3700 Fragaria x ananassa HOM05D005280 ORTHO05D006253 1.2e-79 300.8 315 75.2
Manes.17G056200 Manihot esculenta HOM05D005280 ORTHO05D006253 2.1e-79 300.1 306 78.4
Sc05g0007070 Simmondsia chinensis HOM05D005280 ORTHO05D006253 2.7e-79 299.7 306 76.5
Lj6g0027668 Lotus japonicus HOM05D005280 ORTHO05D006253 3.6e-79 299.3 306 78.4
CANSAT80G2107 Cannabis sativa HOM05D005280 ORTHO05D006253 4.7e-79 298.9 306 88.9
PGR042G3394 Punica granatum HOM05D005280 ORTHO05D006253 4.7e-79 298.9 306 77.1
MD05G1300300 Malus domestica HOM05D005280 ORTHO05D006253 1.0e-78 297.7 314 76.1
TWI38G0304 Tripterygium wilfordii HOM05D005280 ORTHO05D006253 1.8e-78 297.0 307 77.2
MD10G1279400 Malus domestica HOM05D005280 ORTHO05D006253 2.3e-78 296.6 312 76.0
QL05p047377 Quercus lobata HOM05D005280 ORTHO05D006253 4.0e-78 295.8 306 77.5
Prupe.4G062000 Prunus persica HOM05D005280 ORTHO05D006253 1.2e-77 294.3 311 75.6
PGSC0003DMG400008719 Solanum tuberosum HOM05D005280 ORTHO05D006253 2.0e-77 293.5 304 76.6
PGSC0003DMG400009000 Solanum tuberosum HOM05D005280 ORTHO05D006253 2.6e-77 293.1 304 76.6
Haze_06226 Corylus avellana HOM05D005280 ORTHO05D006253 7.5e-77 291.6 306 79.7
Peaxi162Scf00871g00047 Petunia axillaris HOM05D005280 ORTHO05D006253 7.5e-77 291.6 304 76.6
Solyc03g062940.3 Solanum lycopersicum HOM05D005280 ORTHO05D006253 1.3e-76 290.8 304 76.0
Sopen03g015240 Solanum pennellii HOM05D005280 ORTHO05D006253 1.3e-76 290.8 304 76.0
AUR62017603 Chenopodium quinoa HOM05D005280 ORTHO05D006253 1.7e-76 290.4 307 76.5
EL10Ac9g22853 Beta vulgaris HOM05D005280 ORTHO05D006253 2.2e-76 290.0 306 86.6
AUR62015144 Chenopodium quinoa HOM05D005280 ORTHO05D006253 2.8e-76 289.7 307 76.2
CAN.G206.30 Capsicum annuum HOM05D005280 ORTHO05D006253 4.9e-76 288.9 304 76.0
SGA_v2.0_scaffold1G00053 Striga asiatica HOM05D005280 ORTHO05D006253 4.9e-76 288.9 304 81.2
Ah.01g013480 Amaranthus hybridus HOM05D005280 ORTHO05D006253 6.3e-76 288.5 307 75.6
Carub.0001s2739 Capsella rubella HOM05D005280 ORTHO05D006253 1.4e-75 287.3 311 77.8
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.4e-75 287.3 304 75.0
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.8e-75 287.0 304 75.0
Thecc.06G170100 Theobroma cacao HOM05D005280 ORTHO05D006253 4.1e-75 285.8 311 82.6
AT1G29260 Arabidopsis thaliana HOM05D005280 ORTHO05D006253 7.0e-75 285.0 311 75.6
Migut.M01035 Erythranthe guttata HOM05D005280 ORTHO05D006253 9.2e-75 284.6 304 83.6
Duzib160G0285 Durio zibethinus HOM05D005280 ORTHO05D006253 2.0e-74 283.5 311 72.7
CARHR028510 Cardamine hirsuta HOM05D005280 ORTHO05D006253 1.3e-73 280.8 311 78.1
Gohir.D10G037400 Gossypium hirsutum HOM05D005280 ORTHO05D006253 1.3e-73 280.8 311 82.3
SHI28515 Sapria himalayana HOM05D005280 ORTHO05D006253 1.3e-73 280.8 306 74.8
Gohir.A10G036800 Gossypium hirsutum HOM05D005280 ORTHO05D006253 2.3e-73 280.0 311 82.3
AL1G42940 Arabidopsis lyrata HOM05D005280 ORTHO05D006253 1.9e-72 276.9 311 82.3
CDE10G0374 Ceratophyllum demersum HOM05D005280 ORTHO05D006253 1.9e-72 276.9 304 83.6
Gorai.011G039400 Gossypium raimondii HOM05D005280 ORTHO05D006253 1.9e-72 276.9 311 81.7
Potri.004G057600 Populus trichocarpa HOM05D005280 ORTHO05D006253 2.5e-72 276.6 306 79.7
Duzib192G0183 Durio zibethinus HOM05D005280 ORTHO05D006253 5.6e-72 275.4 311 81.4
Hma1.2p1_1912F.1_g307320 Hydrangea macrophylla HOM05D005280 ORTHO05D006253 2.3e-70 270.0 141 87.9
BolC3t19816H Brassica oleracea HOM05D005280 ORTHO05D006253 3.0e-70 269.6 311 81.4
Dinv16775 Davidia involucrata HOM05D005280 ORTHO05D006253 6.8e-70 268.5 278 80.2
Dinv40681 Davidia involucrata HOM05D005280 ORTHO05D006253 8.9e-70 268.1 141 86.5
vmacro16064 Vaccinium macrocarpon HOM05D005280 ORTHO05D006253 1.2e-69 267.7 141 87.2
Rhsim02G0143200 Rhododendron simsii HOM05D005280 ORTHO05D006253 3.7e-68 262.7 141 87.2
Sed0011601 Sechium edule HOM05D005280 ORTHO05D006253 3.7e-68 262.7 141 85.1
ClCG01G023770 Citrullus lanatus HOM05D005280 ORTHO05D006253 6.4e-68 261.9 141 84.4
CsaV3_6G050930 Cucumis sativus L. HOM05D005280 ORTHO05D006253 6.4e-68 261.9 141 84.4
MELO3C007211.2 Cucumis melo HOM05D005280 ORTHO05D006253 1.4e-67 260.8 141 83.7
Ciclev10015974m.g Citrus clementina HOM05D005280 ORTHO05D006253 7.0e-67 258.5 142 83.8
Atru.chr10.1658 Acer truncatum HOM05D005280 ORTHO05D006253 4.6e-66 255.8 142 82.4
Nn1g04427 Nelumbo nucifera HOM05D005280 ORTHO05D006253 4.6e-66 255.8 141 82.3
Phvul.006G175800 Phaseolus vulgaris HOM05D005280 ORTHO05D006253 8.6e-65 251.5 143 81.1
RcHm_v2.0_Chr5g0010881 Rosa chinensis HOM05D005280 ORTHO05D006253 1.5e-64 250.8 145 80.0
Ca_00439_v3 Cicer arietinum L. HOM05D005280 ORTHO05D006253 1.9e-64 250.4 143 79.7
Aqoxy170s003 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 3.3e-64 249.6 141 80.9
Aqoxy7G03216 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 3.3e-64 249.6 141 80.9
Medtr2g016160 Medicago truncatula HOM05D005280 ORTHO05D006253 3.3e-64 249.6 143 79.0
Glyma.13G229400 Glycine max HOM05D005280 ORTHO05D006253 4.3e-64 249.2 143 79.0
Glyma.15G083100 Glycine max HOM05D005280 ORTHO05D006253 7.3e-64 248.4 143 79.0
FAN11G1284 Fragaria x ananassa HOM05D005280 ORTHO05D006253 9.5e-64 248.1 144 79.2
CiPaw.10G059400 Carya illinoinensis HOM05D005280 ORTHO05D006253 1.2e-63 247.7 143 81.1
FvH4_3g07730 Fragaria vesca HOM05D005280 ORTHO05D006253 1.2e-63 247.7 144 79.2
FAN21G3704 Fragaria x ananassa HOM05D005280 ORTHO05D006253 1.2e-63 247.7 144 78.5
FAN25G0161 Fragaria x ananassa HOM05D005280 ORTHO05D006253 1.2e-63 247.7 144 79.2
arahy.Tifrunner.gnm1.ann1.8U8ZZM Arachis hypogaea HOM05D005280 ORTHO05D006253 2.1e-63 246.9 143 79.7
arahy.Tifrunner.gnm1.ann1.IM81E3 Arachis hypogaea HOM05D005280 ORTHO05D006253 2.1e-63 246.9 143 79.7
Psat1g197880 Pisum sativum HOM05D005280 ORTHO05D006253 2.1e-63 246.9 143 78.3
Manes.16G040400 Manihot esculenta HOM05D005280 ORTHO05D006253 3.6e-63 246.1 143 81.1
VMungo0540G1202 Vigna mungo HOM05D005280 ORTHO05D006253 4.7e-63 245.7 143 79.0
TAR629G2088 Trochodendron aralioides HOM05D005280 ORTHO05D006253 6.2e-63 245.4 141 77.3
Cfa000612 Carpinus fangiana HOM05D005280 ORTHO05D006253 2.3e-62 243.4 143 77.6
PSO229G0003 Papaver somniferum HOM05D005280 ORTHO05D006253 3.1e-62 243.0 142 77.5
Cc02_g15040 Coffea canephora HOM05D005280 ORTHO05D006253 4.0e-62 242.7 146 78.1
PSO675G8759 Papaver somniferum HOM05D005280 ORTHO05D006253 4.0e-62 242.7 142 77.5
Sabra04G0037300 Salix brachista HOM05D005280 ORTHO05D006253 8.9e-62 241.5 143 79.0
MBI05_g10770_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 1.2e-61 241.1 141 77.3
MBI07_g43934_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 1.2e-61 241.1 141 78.0
MSTRG.7412 Avicennia marina HOM05D005280 ORTHO05D006253 5.8e-61 238.8 141 78.0
THA.LOC104812639 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 7.5e-61 238.4 141 73.8
Aa31LG6G6330 Aethionema arabicum HOM05D005280 ORTHO05D006253 3.7e-60 236.1 142 73.2
HPP92_008751 Vanilla planifolia HOM05D005280 ORTHO05D006253 4.9e-60 235.7 141 73.0
A09p37140 Brassica napus HOM05D005280 ORTHO05D006253 1.1e-59 234.6 142 72.5
BraA09t39230Z Brassica rapa HOM05D005280 ORTHO05D006253 1.1e-59 234.6 142 72.5
unitig_699.g19366 Utricularia gibba HOM05D005280 ORTHO05D006253 1.4e-59 234.2 141 75.9
COL.COLO4_31288 Corchorus olitorius HOM05D005280 ORTHO05D006253 1.9e-59 233.8 142 72.5
Sp1g25120 Schrenkiella parvula HOM05D005280 ORTHO05D006253 1.9e-59 233.8 142 73.2
THA.LOC104804949 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 1.9e-59 233.8 142 73.2
BcaC05g26943 Brassica carinata HOM05D005280 ORTHO05D006253 2.4e-59 233.4 142 72.5
C05p27910 Brassica napus HOM05D005280 ORTHO05D006253 2.4e-59 233.4 142 72.5
BolC5t31517H Brassica oleracea HOM05D005280 ORTHO05D006253 2.4e-59 233.4 142 72.5
BcaB07g32507 Brassica carinata HOM05D005280 ORTHO05D006253 4.1e-59 232.6 142 72.5
BraA08t34477Z Brassica rapa HOM05D005280 ORTHO05D006253 4.1e-59 232.6 142 73.2
Thhalv10008237m.g Eutrema salsugineum HOM05D005280 ORTHO05D006253 5.4e-59 232.3 142 71.8
BcaC01g00082 Brassica carinata HOM05D005280 ORTHO05D006253 9.2e-59 231.5 142 72.5
C03p75590 Brassica napus HOM05D005280 ORTHO05D006253 9.2e-59 231.5 142 72.5
BcaB03g12145 Brassica carinata HOM05D005280 ORTHO05D006253 1.3e-57 227.6 142 71.1
Cpa.g.sc7.74 Carica papaya HOM05D005280 ORTHO05D006253 2.6e-53 213.4 310 69.0
Mapoly0030s0014 Marchantia polymorpha HOM05D005280 ORTHO05D006253 1.7e-52 210.7 305 74.4
Sabra11G0048200 Salix brachista HOM05D005280 ORTHO05D006253 3.2e-51 206.5 265 72.5
Pp3c17_8040 Physcomitrium patens HOM05D005280 ORTHO05D006253 1.2e-47 194.5 311 67.8
PSO782G3364 Papaver somniferum HOM05D005280 ORTHO05D006253 4.0e-46 189.5 115 73.9
SMO119G0322 Selaginella moellendorffii HOM05D005280 ORTHO05D006253 1.5e-45 187.6 141 61.0
Zm00001eb238680 Zea mays HOM05D005280 ORTHO05D006253 2.6e-45 186.8 144 61.8
AagrBONN_evm.TU.Sc2ySwM_117.3414 Anthoceros agrestis HOM05D005280 ORTHO05D006253 3.8e-44 183.0 303 70.3
Cre17.g730200 Chlamydomonas reinhardtii HOM05D005280 ORTHO05D006253 4.1e-43 179.5 137 57.7
Aqoxy1G02047 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 1.2e-42 177.9 104 77.9
CBR_g23503 Chara braunii HOM05D005280 ORTHO05D006253 4.6e-42 176.0 303 57.4
A08p25250 Brassica napus HOM05D005280 ORTHO05D006253 7.8e-42 175.3 142 57.7
SEGI_31924 Sequoiadendron giganteum HOM05D005280 ORTHO05D006253 3.3e-40 169.9 299 61.9
Pp3c15_2410 Physcomitrium patens HOM05D005280 ORTHO05D006253 2.7e-34 150.2 299 66.2
PRCOL_00004365 Prasinoderma coloniale HOM05D005280 ORTHO05D006253 4.6e-34 149.4 107 61.7
ATR0706G060 Amborella trichopoda HOM05D005280 ORTHO05D006253 1.3e-31 141.4 112 60.7
MCO15G120 Micromonas commoda HOM05D005280 ORTHO05D006253 2.9e-28 130.2 110 55.5
AUR62034161 Chenopodium quinoa HOM05D005280 ORTHO05D006253 2.1e-26 124.0 305 38.4
Potri.011G066600 Populus trichocarpa HOM05D005280 ORTHO05D006253 1.9e-24 117.5 195 70.3
MBI16_g15539_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 8.7e-17 92.0 141 35.5
TPR.G11693 Trifolium pratense HOM05D005280 ORTHO05D006253 1.3e-15 88.2 83 55.4
MBI16_g15538_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 1.1e-14 85.1 141 36.2
Aqoxy1G02046 Aquilegia oxysepala HOM05D019969 ORTHO05D019446 6.9e-14 82.4 96 79.2
Dinv41375 Davidia involucrata HOM05D000140 ORTHO05D000087 1.7e-12 77.8 118 42.4
FAN14G0286 Fragaria x ananassa HOM05D005280 ORTHO05D019446 3.5e-10 70.1 111 38.7
Hma1.2p1_1912F.1_g307330 Hydrangea macrophylla HOM05D019969 ORTHO05D019446 5.1e-09 66.2 79 50.6
VMungo1383G1864 Vigna mungo HOM05D005280 ORTHO05D006253 1.5e-08 64.7 35 74.3
VMungo0331G0944 Vigna mungo HOM05D005280 ORTHO05D006253 3.7e-07 60.1 35 68.6
Cfa022092 Carpinus fangiana HOM05D000164 ORTHO05D121826 4.1e-06 56.6 76 35.5


User provided reference genes

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