Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022794 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 2.1e-44 181.8 80 100.0
CSS0040378 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 3.6e-28 127.9 64 89.1
Actinidia32868 Actinidia chinensis HOM05D005277 ORTHO05D006319 6.3e-25 117.1 62 82.3
Actinidia34103 Actinidia chinensis HOM05D005277 ORTHO05D006319 1.8e-24 115.5 62 80.6
Hma1.2p1_2482F.1_g323010 Hydrangea macrophylla HOM05D005277 ORTHO05D006319 1.2e-23 112.8 62 80.6
MD01G1052300 Malus domestica HOM05D005277 ORTHO05D006319 1.1e-21 106.3 61 80.3
unitig_0.g2484 Utricularia gibba HOM05D002154 ORTHO05D002362 1.4e-21 105.9 63 79.4
Rhsim03G0179700 Rhododendron simsii HOM05D005277 ORTHO05D006319 2.5e-21 105.1 62 79.0
MBI07_g12793_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 1.2e-20 102.8 64 78.1
arahy.Tifrunner.gnm1.ann1.A7XXX8 Arachis hypogaea HOM05D005277 ORTHO05D006319 2.1e-20 102.1 62 74.2
arahy.Tifrunner.gnm1.ann1.I9WHAY Arachis hypogaea HOM05D005277 ORTHO05D006319 2.1e-20 102.1 62 74.2
FAN01G0371 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.1e-20 102.1 61 75.4
FAN06G3712 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.1e-20 102.1 61 75.4
FAN06G3877 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.1e-20 102.1 61 75.4
Atru.chr5.442 Acer truncatum HOM05D005277 ORTHO05D006319 2.7e-20 101.7 62 75.8
CSS0038928 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 3.6e-20 101.3 64 73.4
MBI06_g06483_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 3.6e-20 101.3 64 76.6
Potri.002G155800 Populus trichocarpa HOM05D005277 ORTHO05D006319 4.7e-20 100.9 64 73.4
QL08p049830 Quercus lobata HOM05D005277 ORTHO05D006319 4.7e-20 100.9 62 75.8
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 4.7e-20 100.9 61 75.4
RcHm_v2.0_Chr1g0353371 Rosa chinensis HOM05D005277 ORTHO05D006319 4.7e-20 100.9 61 75.4
vmacro06693 Vaccinium macrocarpon HOM05D005277 ORTHO05D006319 4.7e-20 100.9 62 75.8
RcHm_v2.0_Chr1g0353351 Rosa chinensis HOM05D005277 ORTHO05D006319 7.9e-20 100.1 61 75.4
Prupe.2G159900 Prunus persica HOM05D005277 ORTHO05D006319 1.0e-19 99.8 61 78.7
Potri.014G079800 Populus trichocarpa HOM05D005277 ORTHO05D006319 1.4e-19 99.4 64 71.9
Nn1g01427 Nelumbo nucifera HOM05D005277 ORTHO05D006319 1.8e-19 99.0 62 77.4
TWI59G0525 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 1.8e-19 99.0 63 74.6
Cpa.g.c32742 Carica papaya HOM05D005277 ORTHO05D006319 2.3e-19 98.6 61 73.8
TWI23G0263 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 3.0e-19 98.2 63 73.0
Cfa003961 Carpinus fangiana HOM05D005277 ORTHO05D006319 3.9e-19 97.8 62 75.8
Haze_15461 Corylus avellana HOM05D005277 ORTHO05D006319 3.9e-19 97.8 62 75.8
CARHR248750 Cardamine hirsuta HOM05D005277 ORTHO05D006319 5.1e-19 97.4 61 72.1
Thhalv10026679m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 5.1e-19 97.4 61 72.1
FAN03G2608 Fragaria x ananassa HOM05D005277 ORTHO05D006319 5.1e-19 97.4 62 74.2
Hund27308 Selenicereus undatus HOM05D005277 ORTHO05D006319 5.1e-19 97.4 64 67.2
GSVIVG01026823001 Vitis vinifera HOM05D005277 ORTHO05D006319 5.1e-19 97.4 61 77.0
Lsat_1_v5_gn_8_8281 Lactuca sativa HOM05D005277 ORTHO05D006319 6.7e-19 97.1 65 72.3
RcHm_v2.0_Chr0c39g0503241 Rosa chinensis HOM05D005277 ORTHO05D006319 6.7e-19 97.1 53 79.2
RcHm_v2.0_Chr1g0353201 Rosa chinensis HOM05D005277 ORTHO05D006319 6.7e-19 97.1 53 79.2
Ciclev10023111m.g Citrus clementina HOM05D005277 ORTHO05D006319 1.1e-18 96.3 61 77.0
Duzib133G1303 Durio zibethinus HOM05D005277 ORTHO05D006319 1.1e-18 96.3 63 73.0
Oeu021782.1 Olea europaea HOM05D005277 ORTHO05D006319 1.1e-18 96.3 64 73.4
CiPaw.02G027600 Carya illinoinensis HOM05D005277 ORTHO05D006319 1.5e-18 95.9 62 74.2
Nitab4.5_0008315g0010 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.5e-18 95.9 61 70.5
Os09g0560300 Oryza sativa ssp. japonica HOM05D005277 ORTHO05D006319 1.5e-18 95.9 59 74.6
Sp7g35520 Schrenkiella parvula HOM05D002845 ORTHO05D006319 1.5e-18 95.9 61 70.5
Sc23g0003110 Simmondsia chinensis HOM05D005277 ORTHO05D006319 1.5e-18 95.9 61 68.9
CiPaw.01G056300 Carya illinoinensis HOM05D005277 ORTHO05D006319 2.0e-18 95.5 62 74.2
Manes.05G038000 Manihot esculenta HOM05D005277 ORTHO05D006319 2.0e-18 95.5 62 71.0
Hund16947 Selenicereus undatus HOM05D005277 ORTHO05D006319 2.0e-18 95.5 61 68.9
CsaV3_2G015020 Cucumis sativus L. HOM05D005277 ORTHO05D006319 2.6e-18 95.1 61 77.0
Thhalv10029049m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 2.6e-18 95.1 61 70.5
Peaxi162Scf01969g00020 Petunia axillaris HOM05D005277 ORTHO05D006319 2.6e-18 95.1 56 73.2
Sed0006100 Sechium edule HOM05D005277 ORTHO05D006319 2.6e-18 95.1 61 73.8
THA.LOC104801449 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 2.6e-18 95.1 61 72.1
A03p65670 Brassica napus HOM05D005277 ORTHO05D006319 3.3e-18 94.7 61 68.9
BraA03t15618Z Brassica rapa HOM05D005277 ORTHO05D006319 3.3e-18 94.7 61 68.9
CDE05G2617 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 3.3e-18 94.7 61 73.8
Duzib138G0488 Durio zibethinus HOM05D005277 ORTHO05D006319 3.3e-18 94.7 63 71.4
HanXRQChr08g0209231 Helianthus annuus HOM05D005277 ORTHO05D006319 3.3e-18 94.7 62 72.6
Manes.01G260200 Manihot esculenta HOM05D005277 ORTHO05D006319 3.3e-18 94.7 62 71.0
Nitab4.5_0000716g0150 Nicotiana tabacum HOM05D005277 ORTHO05D006319 3.3e-18 94.7 53 75.5
Nitab4.5_0003365g0020 Nicotiana tabacum HOM05D005277 ORTHO05D006319 3.3e-18 94.7 53 75.5
Aa31LG5G410 Aethionema arabicum HOM05D005277 ORTHO05D006319 4.4e-18 94.4 61 70.5
CDE06G0676 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 4.4e-18 94.4 59 74.6
Lj1g0008169 Lotus japonicus HOM05D005277 ORTHO05D006319 4.4e-18 94.4 62 72.6
SalBow2G0266 Salvia bowleyana HOM05D005277 ORTHO05D006319 4.4e-18 94.4 64 71.9
Sp6g00620 Schrenkiella parvula HOM05D005277 ORTHO05D006319 4.4e-18 94.4 61 70.5
MELO3C023322.2 Cucumis melo HOM05D005277 ORTHO05D006319 5.7e-18 94.0 61 75.4
Phvul.008G068800 Phaseolus vulgaris HOM05D005277 ORTHO05D006319 5.7e-18 94.0 64 68.8
Solyc03g025910.3 Solanum lycopersicum HOM05D005277 ORTHO05D006319 5.7e-18 94.0 53 73.6
Sopen03g004720 Solanum pennellii HOM05D005277 ORTHO05D006319 5.7e-18 94.0 53 73.6
PGSC0003DMG400014288 Solanum tuberosum HOM05D005277 ORTHO05D006319 5.7e-18 94.0 53 73.6
Zm00001eb104680 Zea mays HOM05D005277 ORTHO05D006319 5.7e-18 94.0 56 75.0
Zm00001eb320330 Zea mays HOM05D005277 ORTHO05D006319 5.7e-18 94.0 56 75.0
Ah.05g176400 Amaranthus hybridus HOM05D005277 ORTHO05D006319 7.4e-18 93.6 64 65.6
Lalb_Chr01g0021101 Lupinus albus HOM05D005277 ORTHO05D006319 7.4e-18 93.6 53 79.2
Lalb_Chr19g0127071 Lupinus albus HOM05D005277 ORTHO05D006319 7.4e-18 93.6 64 68.8
Sabra14G0058000 Salix brachista HOM05D005277 ORTHO05D006319 7.4e-18 93.6 64 68.8
SHI13469 Sapria himalayana HOM05D005277 ORTHO05D006319 9.7e-18 93.2 61 70.5
PSO782G2674 Papaver somniferum HOM05D005277 ORTHO05D006319 1.3e-17 92.8 80 55.0
PGR042G3267 Punica granatum HOM05D005277 ORTHO05D006319 1.3e-17 92.8 62 71.0
ATR0763G077 Amborella trichopoda HOM05D005277 ORTHO05D006319 1.7e-17 92.4 59 76.3
ClCG11G004150 Citrullus lanatus HOM05D005277 ORTHO05D006319 1.7e-17 92.4 61 73.8
HanXRQChr02g0054711 Helianthus annuus HOM05D005277 ORTHO05D006319 1.7e-17 92.4 64 71.9
Nitab4.5_0000080g0040 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.7e-17 92.4 61 68.9
Thecc.01G365200 Theobroma cacao HOM05D005277 ORTHO05D006319 1.7e-17 92.4 64 67.2
EL10Ac1g00522 Beta vulgaris HOM05D005277 ORTHO05D006319 2.2e-17 92.0 61 67.2
Gohir.D07G149400 Gossypium hirsutum HOM05D005277 ORTHO05D006319 2.2e-17 92.0 61 70.5
Gorai.001G170800 Gossypium raimondii HOM05D005277 ORTHO05D006319 2.2e-17 92.0 61 70.5
Gorai.004G156900 Gossypium raimondii HOM05D005277 ORTHO05D006319 2.2e-17 92.0 62 71.0
ATR0721G079 Amborella trichopoda HOM05D005277 ORTHO05D006319 2.8e-17 91.7 59 76.3
BolC3t16185H Brassica oleracea HOM05D005277 ORTHO05D006319 2.8e-17 91.7 56 71.4
CANSAT56G2015 Cannabis sativa HOM05D005277 ORTHO05D006319 2.8e-17 91.7 63 71.4
AL6G52850 Arabidopsis lyrata HOM05D005277 ORTHO05D006319 3.7e-17 91.3 61 68.9
ECA233G3829 Erigeron canadensis HOM05D005277 ORTHO05D006319 3.7e-17 91.3 62 69.4
Medtr7g076630 Medicago truncatula HOM05D005277 ORTHO05D006319 3.7e-17 91.3 64 70.3
Sed0005058 Sechium edule HOM05D005277 ORTHO05D006319 3.7e-17 91.3 61 68.9
THA.LOC104817018 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 3.7e-17 91.3 56 73.2
AT4G00585 Arabidopsis thaliana HOM05D005277 ORTHO05D006319 4.8e-17 90.9 61 70.5
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 4.8e-17 90.9 59 66.1
Migut.F00352 Erythranthe guttata HOM05D005277 ORTHO05D006319 6.3e-17 90.5 62 72.6
C07p62700 Brassica napus HOM05D005277 ORTHO05D006319 8.2e-17 90.1 62 66.1
BolC7t46684H Brassica oleracea HOM05D005277 ORTHO05D006319 8.2e-17 90.1 62 66.1
BcaC04g24159 Brassica carinata HOM05D005277 ORTHO05D006319 1.1e-16 89.7 53 71.7
BcaNung05359 Brassica carinata HOM05D005277 ORTHO05D006319 1.1e-16 89.7 53 71.7
C09p00490 Brassica napus HOM05D005277 ORTHO05D006319 1.1e-16 89.7 53 71.7
Gohir.A07G143600 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.1e-16 89.7 61 68.9
HPP92_016701 Vanilla planifolia HOM05D005277 ORTHO05D006319 1.1e-16 89.7 63 68.3
BcaB01g02260 Brassica carinata HOM05D005277 ORTHO05D006319 1.4e-16 89.4 48 77.1
BcaC01g06868 Brassica carinata HOM05D005277 ORTHO05D006319 1.4e-16 89.4 48 77.1
BcaNung05357 Brassica carinata HOM05D005277 ORTHO05D006319 1.4e-16 89.4 48 77.1
BcaNung07162 Brassica carinata HOM05D005277 ORTHO05D006319 1.4e-16 89.4 53 71.7
C03p39140 Brassica napus HOM05D005277 ORTHO05D006319 1.4e-16 89.4 48 77.1
BolC9t52983H Brassica oleracea HOM05D005277 ORTHO05D006319 1.4e-16 89.4 48 77.1
Glyma.18G229200 Glycine max HOM05D005277 ORTHO05D006319 1.4e-16 89.4 46 82.6
Carub.0006s3664 Capsella rubella HOM05D005277 ORTHO05D006319 1.8e-16 89.0 61 67.2
Gohir.A08G129800 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.8e-16 89.0 61 68.9
AUR62004311 Chenopodium quinoa HOM05D005277 ORTHO05D006319 2.4e-16 88.6 59 67.8
Glyma.09G263000 Glycine max HOM05D005277 ORTHO05D006319 2.4e-16 88.6 46 82.6
HPP92_028083 Vanilla planifolia HOM05D005277 ORTHO05D006319 2.4e-16 88.6 66 65.2
Peaxi162Scf00915g00031 Petunia axillaris HOM05D005277 ORTHO05D006319 3.1e-16 88.2 61 63.9
TPR.G37794 Trifolium pratense HOM05D005277 ORTHO05D006319 3.1e-16 88.2 64 67.2
COL.COLO4_12662 Corchorus olitorius HOM05D005277 ORTHO05D006319 4.1e-16 87.8 63 68.3
Gohir.D08G151200 Gossypium hirsutum HOM05D005277 ORTHO05D006319 4.1e-16 87.8 58 69.0
A03p32120 Brassica napus HOM05D005277 ORTHO05D006319 5.3e-16 87.4 47 76.6
A09p00410 Brassica napus HOM05D005277 ORTHO05D006319 5.3e-16 87.4 62 66.1
BraA03t12382Z Brassica rapa HOM05D005277 ORTHO05D006319 5.3e-16 87.4 47 76.6
BraA09t35720Z Brassica rapa HOM05D005277 ORTHO05D006319 5.3e-16 87.4 62 66.1
AUR62022763 Chenopodium quinoa HOM05D005277 ORTHO05D006319 5.3e-16 87.4 59 66.1
Psat3g111720 Pisum sativum HOM05D005277 ORTHO05D006319 5.3e-16 87.4 64 67.2
Aqoxy7G00369 Aquilegia oxysepala HOM05D005277 ORTHO05D006319 7.0e-16 87.0 53 75.5
ATR0174G019 Amborella trichopoda HOM05D005277 ORTHO05D006319 9.1e-16 86.7 59 72.9
Ca_07884_v3 Cicer arietinum L. HOM05D005277 ORTHO05D006319 5.9e-15 84.0 64 64.1
Cc00_g02540 Coffea canephora HOM05D005277 ORTHO05D006319 1.1e-13 79.7 78 51.3
DCAR_018191 Daucus carota HOM05D005277 ORTHO05D006319 1.2e-12 76.3 53 67.9
FAN10G1490 Fragaria x ananassa HOM05D005277 ORTHO05D006319 1.8e-11 72.4 38 78.9
GSVIVG01010541001 Vitis vinifera HOM05D005277 ORTHO05D006319 5.2e-11 70.9 38 81.6
Cc02_g03110 Coffea canephora HOM05D005277 ORTHO05D006319 8.8e-11 70.1 38 78.9
Pp3c7_13700 Physcomitrium patens HOM05D005277 ORTHO05D006319 1.3e-09 66.2 50 60.0
Mapoly0023s0078 Marchantia polymorpha HOM05D005277 ORTHO05D006319 3.1e-08 61.6 62 53.2
SMO203G0011 Selaginella moellendorffii HOM05D005277 ORTHO05D006319 9.1e-08 60.1 41 56.1
AagrBONN_evm.TU.Sc2ySwM_369.4 Anthoceros agrestis HOM05D005277 ORTHO05D006319 5.9e-07 57.4 56 50.0


User provided reference genes

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