Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022789 Camellia sinensis var. sinensis HOM05D004903 ORTHO05D005849 2.0e-155 552.4 277 100.0
Dinv20374 Davidia involucrata HOM05D004903 ORTHO05D005849 1.5e-121 439.9 280 76.8
Actinidia25997 Actinidia chinensis HOM05D004903 ORTHO05D005849 1.4e-116 423.3 277 76.5
Actinidia24416 Actinidia chinensis HOM05D004903 ORTHO05D005849 6.0e-115 417.9 285 74.4
vmacro18714 Vaccinium macrocarpon HOM05D004903 ORTHO05D005849 4.4e-110 401.7 277 72.9
TAR624G0709 Trochodendron aralioides HOM05D004903 ORTHO05D005849 3.7e-109 398.7 277 70.4
Manes.11G011500 Manihot esculenta HOM05D004903 ORTHO05D005849 3.6e-104 382.1 277 67.5
QL05p000658 Quercus lobata HOM05D004903 ORTHO05D005849 4.7e-104 381.7 280 69.3
CiPaw.01G210600 Carya illinoinensis HOM05D004903 ORTHO05D005849 1.4e-103 380.2 278 69.4
QL05p000751 Quercus lobata HOM05D004903 ORTHO05D005849 5.2e-103 378.3 280 68.6
Peaxi162Scf00207g01534 Petunia axillaris HOM05D004903 ORTHO05D005849 3.4e-102 375.6 277 67.9
GSVIVG01016657001 Vitis vinifera HOM05D004903 ORTHO05D005849 7.6e-102 374.4 277 68.6
Duzib160G0805 Durio zibethinus HOM05D004903 ORTHO05D005849 2.9e-101 372.5 274 68.2
PGSC0003DMG400004869 Solanum tuberosum HOM05D004903 ORTHO05D005849 6.4e-101 371.3 278 66.2
Atru.chr1.4170 Acer truncatum HOM05D004903 ORTHO05D005849 2.4e-100 369.4 275 66.2
Gohir.A06G142500 Gossypium hirsutum HOM05D004903 ORTHO05D005849 2.4e-100 369.4 274 68.6
Gorai.010G172600 Gossypium raimondii HOM05D004903 ORTHO05D005849 3.2e-100 369.0 274 68.6
Nitab4.5_0006190g0020 Nicotiana tabacum HOM05D004903 ORTHO05D005849 7.1e-100 367.9 277 67.1
Solyc06g063130.3 Solanum lycopersicum HOM05D004903 ORTHO05D005849 1.6e-99 366.7 278 65.1
CAN.G1633.2 Capsicum annuum HOM05D004903 ORTHO05D005849 2.1e-99 366.3 278 65.1
Sopen06g022580 Solanum pennellii HOM05D004903 ORTHO05D005849 6.0e-99 364.8 278 64.4
Prupe.3G030200 Prunus persica HOM05D004903 ORTHO05D005849 1.0e-98 364.0 280 66.8
Thecc.06G131400 Theobroma cacao HOM05D004903 ORTHO05D005849 5.1e-98 361.7 274 66.1
Potri.001G161800 Populus trichocarpa HOM05D004903 ORTHO05D005849 2.5e-97 359.4 277 65.0
TWI59G0350 Tripterygium wilfordii HOM05D004903 ORTHO05D005849 7.3e-97 357.8 283 61.8
MD09G1171800 Malus domestica HOM05D004903 ORTHO05D005849 2.8e-96 355.9 283 65.4
Lj5A28T47 Lonicera japonica HOM05D004903 ORTHO05D005849 1.1e-95 354.0 333 56.2
RcHm_v2.0_Chr2g0148141 Rosa chinensis HOM05D004903 ORTHO05D005849 1.5e-94 350.1 290 62.8
DCAR_022636 Daucus carota HOM05D004903 ORTHO05D005849 3.4e-94 349.0 284 62.3
Hund18627 Selenicereus undatus HOM05D004903 ORTHO05D005849 4.4e-94 348.6 274 63.9
Eucgr.J02586 Eucalyptus grandis HOM05D004903 ORTHO05D005849 7.6e-94 347.8 278 62.6
Dinv37814 Davidia involucrata HOM05D004903 ORTHO05D005849 2.9e-93 345.9 211 79.6
Lj3g0025901 Lotus japonicus HOM05D004903 ORTHO05D005849 3.8e-93 345.5 277 62.5
MD17G1155200 Malus domestica HOM05D004903 ORTHO05D005849 3.8e-93 345.5 285 62.5
HanXRQChr12g0360041 Helianthus annuus HOM05D004903 ORTHO05D005849 6.4e-93 344.7 272 63.6
Rhsim08G0245600 Rhododendron simsii HOM05D004903 ORTHO05D005849 8.4e-93 344.4 231 75.3
FAN14G0435 Fragaria x ananassa HOM05D004903 ORTHO05D005849 1.1e-92 344.0 286 62.2
EL10Ac7g18248 Beta vulgaris HOM05D004903 ORTHO05D005849 1.9e-92 343.2 272 64.3
Lsat_1_v5_gn_5_137641 Lactuca sativa HOM05D004903 ORTHO05D005849 3.2e-92 342.4 268 63.8
FvH4_6g36070 Fragaria vesca HOM05D004903 ORTHO05D005849 4.2e-92 342.0 288 60.8
FAN14G1686 Fragaria x ananassa HOM05D004903 ORTHO05D005849 4.2e-92 342.0 290 61.7
CANSAT56G0172 Cannabis sativa HOM05D004903 ORTHO05D005849 7.1e-92 341.3 279 64.2
Ciclev10026250m.g Citrus clementina HOM05D004903 ORTHO05D005849 9.3e-92 340.9 279 62.7
FAN02G0327 Fragaria x ananassa HOM05D004903 ORTHO05D005849 9.3e-92 340.9 286 62.2
FAN09G2808 Fragaria x ananassa HOM05D004903 ORTHO05D005849 1.6e-91 340.1 290 61.4
CsaV3_7G033900 Cucumis sativus L. HOM05D004903 ORTHO05D005849 2.1e-91 339.7 285 60.4
Nn8g38503 Nelumbo nucifera HOM05D004903 ORTHO05D005849 6.0e-91 338.2 277 63.9
arahy.Tifrunner.gnm1.ann1.97GHXX Arachis hypogaea HOM05D004903 ORTHO05D005849 1.0e-90 337.4 279 60.9
Glyma.07G046600 Glycine max HOM05D004903 ORTHO05D005849 1.0e-90 337.4 277 60.6
ClCG09G001430 Citrullus lanatus HOM05D004903 ORTHO05D005849 1.7e-90 336.7 285 62.1
THA.LOC104810400 Tarenaya hassleriana HOM05D004903 ORTHO05D005849 3.9e-90 335.5 277 62.8
Medtr8g023500 Medicago truncatula HOM05D004903 ORTHO05D005849 8.7e-90 334.3 286 59.1
AUR62001391 Chenopodium quinoa HOM05D004903 ORTHO05D005849 1.5e-89 333.6 276 61.6
MSTRG.10905 Avicennia marina HOM05D004903 ORTHO05D005849 9.6e-89 330.9 285 58.6
PSO724G0850 Papaver somniferum HOM05D004903 ORTHO05D005849 1.3e-88 330.5 275 60.7
Nitab4.5_0010570g0050 Nicotiana tabacum HOM05D004903 ORTHO05D005849 1.6e-88 330.1 277 62.1
Gorai.010G236300 Gossypium raimondii HOM05D004903 ORTHO05D005849 6.2e-88 328.2 274 62.8
PSO135G0609 Papaver somniferum HOM05D004903 ORTHO05D005849 6.2e-88 328.2 275 60.4
Gohir.D06G202400 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.4e-87 327.0 274 62.4
Migut.I01143 Erythranthe guttata HOM05D004903 ORTHO05D005849 2.4e-87 326.2 280 58.9
Thhalv10011709m.g Eutrema salsugineum HOM05D004903 ORTHO05D005849 2.4e-87 326.2 274 59.5
Sabra03G0044200 Salix brachista HOM05D004903 ORTHO05D005849 5.3e-87 325.1 304 57.2
Glyma.16G015600 Glycine max HOM05D004903 ORTHO05D005849 9.0e-87 324.3 279 58.1
arahy.Tifrunner.gnm1.ann1.AA2XIP Arachis hypogaea HOM05D004903 ORTHO05D005849 2.0e-86 323.2 282 59.6
Psat4g164720 Pisum sativum HOM05D004903 ORTHO05D005849 2.0e-86 323.2 276 58.3
SalBow6G3230 Salvia bowleyana HOM05D004903 ORTHO05D005849 3.4e-86 322.4 277 59.2
arahy.Tifrunner.gnm1.ann1.3XU7EE Arachis hypogaea HOM05D004903 ORTHO05D005849 7.6e-86 321.2 278 59.0
CARHR044070 Cardamine hirsuta HOM05D004903 ORTHO05D005849 7.6e-86 321.2 280 60.0
Cfa003452 Carpinus fangiana HOM05D004903 ORTHO05D005849 7.6e-86 321.2 211 74.4
C06p09540 Brassica napus HOM05D004903 ORTHO05D005849 9.9e-86 320.9 274 60.6
BolC6t36028H Brassica oleracea HOM05D004903 ORTHO05D005849 9.9e-86 320.9 274 60.6
Lalb_Chr17g0343171 Lupinus albus HOM05D004903 ORTHO05D005849 1.3e-85 320.5 277 58.1
arahy.Tifrunner.gnm1.ann1.HDKQ14 Arachis hypogaea HOM05D004903 ORTHO05D005849 2.9e-85 319.3 299 56.2
arahy.Tifrunner.gnm1.ann1.M9BVNS Arachis hypogaea HOM05D004903 ORTHO05D005849 4.9e-85 318.5 279 58.1
BcaC08g43554 Brassica carinata HOM05D004903 ORTHO05D005849 8.4e-85 317.8 274 60.2
Sed0027894 Sechium edule HOM05D004903 ORTHO05D005849 8.4e-85 317.8 287 58.5
BcaB02g10893 Brassica carinata HOM05D004903 ORTHO05D005849 1.9e-84 316.6 274 59.9
C06p15280 Brassica napus HOM05D004903 ORTHO05D005849 3.2e-84 315.8 274 59.5
COL.COLO4_30880 Corchorus olitorius HOM05D004903 ORTHO05D005849 3.2e-84 315.8 231 69.3
A05p17920 Brassica napus HOM05D004903 ORTHO05D005849 5.4e-84 315.1 274 59.9
BolC6t36703H Brassica oleracea HOM05D004903 ORTHO05D005849 7.1e-84 314.7 274 59.1
AL1G62450 Arabidopsis lyrata HOM05D004903 ORTHO05D005849 9.3e-84 314.3 274 59.5
AT1G53760 Arabidopsis thaliana HOM05D004903 ORTHO05D005849 9.3e-84 314.3 274 59.5
A06p00790 Brassica napus HOM05D004903 ORTHO05D005849 1.2e-83 313.9 274 59.1
BraA05t20686Z Brassica rapa HOM05D004903 ORTHO05D005849 1.6e-83 313.5 274 59.5
BraA06t23313Z Brassica rapa HOM05D004903 ORTHO05D005849 1.6e-83 313.5 274 59.1
Gohir.A06G194700 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.6e-83 313.5 274 60.9
BcaC08g44129 Brassica carinata HOM05D004903 ORTHO05D005849 2.1e-83 313.2 274 59.1
Cc04_g00600 Coffea canephora HOM05D004903 ORTHO05D005849 2.1e-83 313.2 286 58.0
BcaB07g33303 Brassica carinata HOM05D004903 ORTHO05D005849 2.7e-83 312.8 274 60.2
Aqoxy7G00919 Aquilegia oxysepala HOM05D004903 ORTHO05D005849 1.0e-82 310.8 282 56.0
Sp1g40280 Schrenkiella parvula HOM05D004903 ORTHO05D005849 1.0e-82 310.8 274 59.1
Carub.0001s4303 Capsella rubella HOM05D004903 ORTHO05D005849 1.1e-81 307.4 274 58.0
Phvul.010G122300 Phaseolus vulgaris HOM05D004903 ORTHO05D005849 1.9e-81 306.6 278 57.9
Sc12g0011010 Simmondsia chinensis HOM05D004903 ORTHO05D005849 3.3e-81 305.8 268 59.3
arahy.Tifrunner.gnm1.ann1.ZQ2A8X Arachis hypogaea HOM05D004903 ORTHO05D005849 3.1e-79 299.3 298 53.4
Sabra01G0130700 Salix brachista HOM05D004903 ORTHO05D005849 2.6e-78 296.2 300 55.7
Actinidia31143 Actinidia chinensis HOM05D004903 ORTHO05D005849 4.5e-78 295.4 214 70.1
Gorai.011G054300 Gossypium raimondii HOM05D004903 ORTHO05D005849 5.8e-78 295.0 219 66.7
Hma1.2p1_0090F.1_g045680 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 5.8e-78 295.0 212 68.4
unitig_32.g11002 Utricularia gibba HOM05D004903 ORTHO05D005849 3.8e-77 292.4 292 52.4
Aa31LG10G1530 Aethionema arabicum HOM05D000070 ORTHO05D003301 8.4e-77 291.2 252 59.1
Oeu053414.1 Olea europaea HOM05D004903 ORTHO05D005849 1.1e-76 290.8 234 62.0
Ca_23466_v3 Cicer arietinum L. HOM05D004903 ORTHO05D005849 1.9e-76 290.0 232 64.2
HPP92_000828 Vanilla planifolia HOM05D004903 ORTHO05D005849 5.5e-76 288.5 277 54.2
Hma1.2p1_1999F.1_g310500 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 9.3e-76 287.7 185 74.6
arahy.Tifrunner.gnm1.ann1.5Z4EMJ Arachis hypogaea HOM05D004903 ORTHO05D005849 2.1e-75 286.6 278 54.3
Cpa.g.sc25.203 Carica papaya HOM05D004903 ORTHO05D005849 3.9e-74 282.3 186 74.2
TPR.G15248 Trifolium pratense HOM05D004903 ORTHO05D005849 6.7e-74 281.6 223 62.8
MELO3C024303.2 Cucumis melo HOM05D004903 ORTHO05D005849 1.9e-73 280.0 193 71.0
ECA234G0009 Erigeron canadensis HOM05D004903 ORTHO05D005849 2.5e-73 279.6 226 62.4
AUR62025608 Chenopodium quinoa HOM05D004903 ORTHO05D005849 3.3e-73 279.3 266 54.9
SGA_v2.0_scaffold71G23946 Striga asiatica HOM05D004903 ORTHO05D005849 7.4e-73 278.1 286 53.5
MBI17_g12875_MAGBIO Magnolia biondii HOM05D004903 ORTHO05D005849 1.6e-72 276.9 277 51.6
Zm00001eb207930 Zea mays HOM05D004903 ORTHO05D005849 2.4e-71 273.1 278 49.6
VMungo0331G0875 Vigna mungo HOM05D004903 ORTHO05D005849 5.3e-71 271.9 224 61.6
ATR0006G080 Amborella trichopoda HOM05D004903 ORTHO05D005849 7.6e-70 268.1 268 51.1
Gohir.A10G050050 Gossypium hirsutum HOM05D004903 ORTHO05D005849 7.6e-70 268.1 267 54.3
Os02g0152600 Oryza sativa ssp. japonica HOM05D004903 ORTHO05D005849 2.9e-69 266.2 282 46.8
Oeu019513.1 Olea europaea HOM05D004903 ORTHO05D005849 3.8e-69 265.8 190 69.5
Sed0021101 Sechium edule HOM05D004903 ORTHO05D005849 4.8e-64 248.8 233 55.8
CDE06G0378 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 7.6e-62 241.5 230 53.0
CDE04G1042 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 4.3e-57 225.7 231 52.4
Gohir.D10G050650 Gossypium hirsutum HOM05D004903 ORTHO05D005849 8.2e-56 221.5 161 67.1
Haze_16144 Corylus avellana HOM05D003205 ORTHO05D003746 4.2e-52 209.1 284 44.7
Haze_16148 Corylus avellana HOM05D003205 ORTHO05D003746 1.0e-50 204.5 284 44.7
Mapoly0021s0048 Marchantia polymorpha HOM05D004903 ORTHO05D005849 5.3e-47 192.2 287 36.2
AagrBONN_evm.TU.Sc2ySwM_228.2429 Anthoceros agrestis HOM05D004903 ORTHO05D005849 1.2e-43 181.0 229 40.6
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 3.0e-42 176.4 224 46.9
Gohir.D06G148232 Gossypium hirsutum HOM05D004903 ORTHO05D005849 5.3e-39 165.6 117 74.4
CBR_g34164 Chara braunii HOM05D004903 ORTHO05D005849 5.2e-34 149.1 207 38.2
BcaB02g07096 Brassica carinata HOM05D000219 ORTHO05D000226 2.0e-33 147.1 115 66.1
Pp3c13_9790 Physcomitrium patens HOM05D004903 ORTHO05D005849 2.6e-33 146.7 275 32.4
BcaB07g32153 Brassica carinata HOM05D004903 ORTHO05D005849 7.5e-33 145.2 119 63.9
arahy.Tifrunner.gnm1.ann1.RS9BE1 Arachis hypogaea HOM05D004903 ORTHO05D005849 2.0e-30 137.1 96 69.8
arahy.Tifrunner.gnm1.ann1.AT31DH Arachis hypogaea HOM05D004903 ORTHO05D005849 4.5e-30 136.0 115 61.7
Gohir.D02G109866 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.4e-23 114.4 84 64.3
SEGI_28585 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 1.7e-21 107.5 120 46.7
SEGI_38260 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 2.9e-21 106.7 129 45.0
Cpa.g.sc25.204 Carica papaya HOM05D004903 ORTHO05D005849 3.8e-21 106.3 109 49.5
Duzib192G1079 Durio zibethinus HOM05D004903 ORTHO05D005849 4.2e-20 102.8 205 35.1
CDE06G0441 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 6.1e-19 99.0 88 56.8
Hma1.2p1_0090F.1_g045690 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 2.6e-17 93.6 69 68.1
Glyma.16G014900 Glycine max HOM05D004903 ORTHO05D005849 3.7e-16 89.7 100 50.0
Cre08.g358557 Chlamydomonas reinhardtii HOM05D004903 ORTHO05D005849 2.0e-14 84.0 193 27.5
PRCOL_00005128 Prasinoderma coloniale HOM05D004903 ORTHO05D005849 1.2e-11 74.7 154 36.4
Actinidia21845 Actinidia chinensis HOM05D004903 ORTHO05D005849 6.1e-11 72.4 44 77.3
TPR.G26438 Trifolium pratense HOM05D004903 ORTHO05D005849 6.1e-11 72.4 72 50.0
arahy.Tifrunner.gnm1.ann1.1E2DFU Arachis hypogaea HOM05D001485 ORTHO05D005849 1.5e-09 67.8 49 73.5
MBI17_g12881_MAGBIO Magnolia biondii HOM05D007686 ORTHO05D009709 7.5e-09 65.5 56 58.9
MCO07G235 Micromonas commoda HOM05D004903 ORTHO05D005849 3.2e-07 60.1 189 24.3


User provided reference genes

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