Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022781 Camellia sinensis var. sinensis HOM05D000913 ORTHO05D000687 2.6e-50 201.8 109 100.0
CSS0038172 Camellia sinensis var. sinensis HOM05D000913 ORTHO05D000687 6.1e-23 110.9 111 64.0
CSS0020217 Camellia sinensis var. sinensis HOM05D000913 ORTHO05D000687 1.0e-14 83.6 69 73.9
MD03G1039000 Malus domestica HOM05D000913 ORTHO05D000687 6.8e-14 80.9 103 51.5
vmacro11625 Vaccinium macrocarpon HOM05D000913 ORTHO05D000687 8.9e-14 80.5 112 50.0
Nn1g07601 Nelumbo nucifera HOM05D000913 ORTHO05D000687 2.0e-13 79.3 85 60.0
Dinv03822 Davidia involucrata HOM05D000913 ORTHO05D000687 1.7e-12 76.3 86 60.5
Dinv03824 Davidia involucrata HOM05D000913 ORTHO05D000687 1.1e-11 73.6 114 50.9
QL05p005810 Quercus lobata HOM05D000913 ORTHO05D000687 1.4e-11 73.2 110 47.3
Haze_09880 Corylus avellana HOM05D000913 ORTHO05D000687 3.2e-11 72.0 107 46.7
Dinv16085 Davidia involucrata HOM05D000913 ORTHO05D000687 3.2e-11 72.0 80 61.2
Manes.13G059500 Manihot esculenta HOM05D000913 ORTHO05D000687 5.4e-11 71.2 103 46.6
TAR629G2544 Trochodendron aralioides HOM05D000913 ORTHO05D000687 1.2e-10 70.1 110 50.0
Prupe.6G031000 Prunus persica HOM05D000913 ORTHO05D000687 2.0e-10 69.3 110 43.6
QL05p004788 Quercus lobata HOM05D000913 ORTHO05D000687 3.5e-10 68.6 111 45.9
Haze_09888 Corylus avellana HOM05D000913 ORTHO05D000687 1.0e-09 67.0 112 46.4
Duzib268G1294 Durio zibethinus HOM05D000913 ORTHO05D000687 1.3e-09 66.6 101 45.5
Manes.11G055424 Manihot esculenta HOM05D000913 ORTHO05D000687 1.3e-09 66.6 86 50.0
Gohir.A04G003700 Gossypium hirsutum HOM05D000913 ORTHO05D000687 1.7e-09 66.2 97 42.3
Migut.M01600 Erythranthe guttata HOM05D000913 ORTHO05D000687 3.9e-09 65.1 103 48.5
AT3G20180 Arabidopsis thaliana HOM05D000913 ORTHO05D000687 5.0e-09 64.7 103 41.7
MD03G1038900 Malus domestica HOM05D000913 ORTHO05D000687 6.6e-09 64.3 90 45.6
MD11G1039300 Malus domestica HOM05D000913 ORTHO05D000687 6.6e-09 64.3 109 45.0
Cfa016930 Carpinus fangiana HOM05D000913 ORTHO05D000687 8.6e-09 63.9 112 42.0
QL05p004858 Quercus lobata HOM05D000913 ORTHO05D000687 1.1e-08 63.5 106 44.3
QL08p002202 Quercus lobata HOM05D000913 ORTHO05D000687 1.1e-08 63.5 104 45.2
Prupe.6G030200 Prunus persica HOM05D000913 ORTHO05D000687 1.5e-08 63.2 108 43.5
QL08p002039 Quercus lobata HOM05D000913 ORTHO05D000687 1.5e-08 63.2 88 51.1
Thecc.01G201000 Theobroma cacao HOM05D000913 ORTHO05D000687 1.5e-08 63.2 106 45.3
arahy.Tifrunner.gnm1.ann1.FE2NQF Arachis hypogaea HOM05D000913 ORTHO05D000687 1.9e-08 62.8 112 44.6
Manes.11G060239 Manihot esculenta HOM05D000913 ORTHO05D000687 1.9e-08 62.8 85 49.4
Manes.11G060024 Manihot esculenta HOM05D000913 ORTHO05D000687 2.5e-08 62.4 102 44.1
Aqoxy4G01749 Aquilegia oxysepala HOM05D000913 ORTHO05D000687 3.3e-08 62.0 111 44.1
Hma1.2p1_0193F.1_g084060 Hydrangea macrophylla HOM05D000913 ORTHO05D000687 3.3e-08 62.0 100 48.0
Thecc.07G019700 Theobroma cacao HOM05D000913 ORTHO05D000687 3.3e-08 62.0 84 48.8
Dinv10316 Davidia involucrata HOM05D000913 ORTHO05D000687 4.3e-08 61.6 77 53.2
Zm00001eb080210 Zea mays HOM05D000913 ORTHO05D000687 4.3e-08 61.6 99 43.4
Zm00001eb080160 Zea mays HOM05D000913 ORTHO05D000687 5.6e-08 61.2 81 50.6
Duzib138G1828 Durio zibethinus HOM05D000913 ORTHO05D000687 7.3e-08 60.8 103 42.7
Duzib213G0455 Durio zibethinus HOM05D000913 ORTHO05D000687 7.3e-08 60.8 86 52.3
Manes.03G137300 Manihot esculenta HOM05D000913 ORTHO05D000687 7.3e-08 60.8 77 49.4
QL08p002131 Quercus lobata HOM05D000913 ORTHO05D000687 7.3e-08 60.8 106 43.4
Thecc.07G019800 Theobroma cacao HOM05D000913 ORTHO05D000687 7.3e-08 60.8 75 50.7
Duzib138G1373 Durio zibethinus HOM05D000913 ORTHO05D000687 9.5e-08 60.5 103 42.7
Duzib213G0636 Durio zibethinus HOM05D000913 ORTHO05D000687 1.2e-07 60.1 87 48.3
Duzib268G0517 Durio zibethinus HOM05D000913 ORTHO05D000687 1.2e-07 60.1 75 50.7
MBI15_g37255_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 1.2e-07 60.1 83 45.8
MD03G1038400 Malus domestica HOM05D000913 ORTHO05D000687 1.2e-07 60.1 86 45.3
Oeu040052.1 Olea europaea HOM05D000913 ORTHO05D000687 1.2e-07 60.1 102 42.2
GSVIVG01014798001 Vitis vinifera HOM05D000913 ORTHO05D000687 1.2e-07 60.1 77 51.9
Ciclev10010297m.g Citrus clementina HOM05D000913 ORTHO05D000687 1.6e-07 59.7 87 46.0
Duzib138G1058 Durio zibethinus HOM05D000913 ORTHO05D000687 1.6e-07 59.7 103 41.7
Glyma.07G098500 Glycine max HOM05D000913 ORTHO05D000687 1.6e-07 59.7 116 42.2
HanXRQChr01g0023431 Helianthus annuus HOM05D000913 ORTHO05D000687 1.6e-07 59.7 110 44.5
Atru.chr6.3444 Acer truncatum HOM05D000913 ORTHO05D000687 2.1e-07 59.3 83 49.4
AL3G33880 Arabidopsis lyrata HOM05D000913 ORTHO05D000687 2.1e-07 59.3 102 39.2
COL.COLO4_09796 Corchorus olitorius HOM05D000913 ORTHO05D000687 2.1e-07 59.3 75 50.7
FAN16G3426 Fragaria x ananassa HOM05D000913 ORTHO05D000687 2.1e-07 59.3 88 48.9
HanXRQChr01g0023451 Helianthus annuus HOM05D000913 ORTHO05D000687 2.1e-07 59.3 110 44.5
CARHR095770 Cardamine hirsuta HOM05D000913 ORTHO05D000687 2.8e-07 58.9 89 42.7
Gohir.D07G169300 Gossypium hirsutum HOM05D000913 ORTHO05D000687 2.8e-07 58.9 106 41.5
Prupe.6G030300 Prunus persica HOM05D000913 ORTHO05D000687 2.8e-07 58.9 96 46.9
HanXRQChr11g0329801 Helianthus annuus HOM05D000913 ORTHO05D000687 3.6e-07 58.5 110 40.0
QL08p001958 Quercus lobata HOM05D000913 ORTHO05D000687 3.6e-07 58.5 82 52.4
RcHm_v2.0_Chr5g0075321 Rosa chinensis HOM05D000913 ORTHO05D000687 3.6e-07 58.5 73 47.9
Duzib138G1006 Durio zibethinus HOM05D000913 ORTHO05D000687 4.7e-07 58.2 104 41.3
Duzib213G0838 Durio zibethinus HOM05D000913 ORTHO05D000687 4.7e-07 58.2 74 51.4
FAN16G2023 Fragaria x ananassa HOM05D000913 ORTHO05D000687 4.7e-07 58.2 105 45.7
Gorai.007G164300 Gossypium raimondii HOM05D000913 ORTHO05D000687 4.7e-07 58.2 110 39.1
MD03G1039100 Malus domestica HOM05D000913 ORTHO05D000687 4.7e-07 58.2 110 41.8
MD11G1039200 Malus domestica HOM05D000913 ORTHO05D000687 4.7e-07 58.2 77 49.4
Potri.014G171300 Populus trichocarpa HOM05D000913 ORTHO05D000687 4.7e-07 58.2 113 42.5
GSVIVG01026843001 Vitis vinifera HOM05D000913 ORTHO05D000687 4.7e-07 58.2 107 45.8
Ah.12g065180 Amaranthus hybridus HOM05D000913 ORTHO05D000687 6.2e-07 57.8 83 50.6
Cpa.g.sc12.187 Carica papaya HOM05D000913 ORTHO05D000687 6.2e-07 57.8 81 46.9
Gohir.A04G003500 Gossypium hirsutum HOM05D000913 ORTHO05D000687 6.2e-07 57.8 110 37.3
Gohir.D11G154200 Gossypium hirsutum HOM05D000913 ORTHO05D000687 6.2e-07 57.8 110 38.2
Gorai.001G189300 Gossypium raimondii HOM05D000913 ORTHO05D000687 6.2e-07 57.8 106 40.6
Phvul.008G282300 Phaseolus vulgaris HOM05D000913 ORTHO05D000687 6.2e-07 57.8 109 44.0
Potri.001G378700 Populus trichocarpa HOM05D000913 ORTHO05D000687 6.2e-07 57.8 69 49.3
QL08p002158 Quercus lobata HOM05D000913 ORTHO05D000687 6.2e-07 57.8 101 42.6
CANSAT11G0550 Cannabis sativa HOM05D000913 ORTHO05D000687 8.0e-07 57.4 75 50.7
Cpa.g.sc12.95 Carica papaya HOM05D000913 ORTHO05D000687 8.0e-07 57.4 113 40.7
HanXRQChr04g0126321 Helianthus annuus HOM05D000913 ORTHO05D000687 8.0e-07 57.4 112 41.1
Manes.13G059400 Manihot esculenta HOM05D000913 ORTHO05D000687 8.0e-07 57.4 120 37.5
Os02g0585200 Oryza sativa ssp. japonica HOM05D000913 ORTHO05D000687 8.0e-07 57.4 69 49.3
Sabra01G0038000 Salix brachista HOM05D000913 ORTHO05D000687 8.0e-07 57.4 110 40.9
Sc11g0006740 Simmondsia chinensis HOM05D000913 ORTHO05D000687 8.0e-07 57.4 83 48.2
Hma1.2p1_0048F.1_g028140 Hydrangea macrophylla HOM05D000913 ORTHO05D000687 1.1e-06 57.0 75 49.3
QL08p005455 Quercus lobata HOM05D000913 ORTHO05D000687 1.1e-06 57.0 81 45.7
RcHm_v2.0_Chr5g0075281 Rosa chinensis HOM05D000913 ORTHO05D000687 1.1e-06 57.0 83 47.0
Atru.chr1.4051 Acer truncatum HOM05D000913 ORTHO05D000687 1.4e-06 56.6 73 50.7
Dinv05335 Davidia involucrata HOM05D000913 ORTHO05D000687 1.4e-06 56.6 105 44.8
Migut.E01774 Erythranthe guttata HOM05D000913 ORTHO05D000687 1.4e-06 56.6 86 47.7
FvH4_3g24100 Fragaria vesca HOM05D000913 ORTHO05D000687 1.4e-06 56.6 79 48.1
FvH4_3g42060 Fragaria vesca HOM05D000913 ORTHO05D000687 1.4e-06 56.6 86 48.8
FAN09G0650 Fragaria x ananassa HOM05D000913 ORTHO05D000687 1.4e-06 56.6 85 49.4
FAN11G3382 Fragaria x ananassa HOM05D000913 ORTHO05D000687 1.4e-06 56.6 85 49.4
Gorai.009G452700 Gossypium raimondii HOM05D000913 ORTHO05D000687 1.4e-06 56.6 75 45.3
RcHm_v2.0_Chr5g0075291 Rosa chinensis HOM05D000913 ORTHO05D000687 1.4e-06 56.6 84 45.2
SalBow8G3675 Salvia bowleyana HOM05D000913 ORTHO05D000687 1.4e-06 56.6 108 44.4
CiPaw.11G208300 Carya illinoinensis HOM05D000913 ORTHO05D000687 1.8e-06 56.2 76 48.7
Duzib138G0027 Durio zibethinus HOM05D000913 ORTHO05D000687 1.8e-06 56.2 110 40.9
FAN21G3003 Fragaria x ananassa HOM05D000913 ORTHO05D000687 1.8e-06 56.2 109 44.0
Manes.12G067600 Manihot esculenta HOM05D000913 ORTHO05D000687 1.8e-06 56.2 76 44.7
Psat5g105760 Pisum sativum HOM05D000913 ORTHO05D000687 1.8e-06 56.2 79 50.6
Potri.009G048100 Populus trichocarpa HOM05D000913 ORTHO05D000687 1.8e-06 56.2 106 42.5
TPR.G27426 Trifolium pratense HOM05D000913 ORTHO05D000687 1.8e-06 56.2 84 50.0
Glyma.09G179800 Glycine max HOM05D000913 ORTHO05D000687 2.3e-06 55.8 111 42.3
Lalb_Chr22g0353251 Lupinus albus HOM05D000913 ORTHO05D000687 2.3e-06 55.8 79 49.4
RcHm_v2.0_Chr5g0042671 Rosa chinensis HOM05D000913 ORTHO05D000687 2.3e-06 55.8 87 44.8
TAR629G0096 Trochodendron aralioides HOM05D000913 ORTHO05D000687 2.3e-06 55.8 99 43.4
Cpa.g.sc12.188 Carica papaya HOM05D000913 ORTHO05D000687 3.1e-06 55.5 84 46.4
Ciclev10017001m.g Citrus clementina HOM05D000913 ORTHO05D000687 3.1e-06 55.5 108 41.7
FvH4_3g42050 Fragaria vesca HOM05D000913 ORTHO05D000687 3.1e-06 55.5 109 45.9
Nitab4.5_0000134g0080 Nicotiana tabacum HOM05D000913 ORTHO05D000687 3.1e-06 55.5 79 53.2
Potri.001G468500 Populus trichocarpa HOM05D000913 ORTHO05D000687 3.1e-06 55.5 74 52.7
RcHm_v2.0_Chr5g0042661 Rosa chinensis HOM05D000913 ORTHO05D000687 3.1e-06 55.5 83 48.2
SalBow8G4938 Salvia bowleyana HOM05D000913 ORTHO05D000687 3.1e-06 55.5 108 44.4
Ciclev10010525m.g Citrus clementina HOM05D000913 ORTHO05D000687 4.0e-06 55.1 106 41.5
Haze_09886 Corylus avellana HOM05D001067 ORTHO05D000876 4.0e-06 55.1 76 51.3
FvH4_3g42100 Fragaria vesca HOM05D000913 ORTHO05D000687 4.0e-06 55.1 71 50.7
FAN14G2134 Fragaria x ananassa HOM05D000913 ORTHO05D000687 4.0e-06 55.1 109 45.0
Gorai.009G452900 Gossypium raimondii HOM05D000913 ORTHO05D000687 4.0e-06 55.1 75 45.3
MD03G1038100 Malus domestica HOM05D000913 ORTHO05D000687 4.0e-06 55.1 90 44.4
Medtr3g082250 Medicago truncatula HOM05D000913 ORTHO05D000687 4.0e-06 55.1 114 44.7
Potri.014G171500 Populus trichocarpa HOM05D000913 ORTHO05D000687 4.0e-06 55.1 113 40.7
QL08p002030 Quercus lobata HOM05D000913 ORTHO05D000687 4.0e-06 55.1 83 53.0
vmacro12050 Vaccinium macrocarpon HOM05D000913 ORTHO05D000687 4.0e-06 55.1 93 41.9
Haze_23588 Corylus avellana HOM05D000913 ORTHO05D000687 5.2e-06 54.7 74 48.6
DCAR_019659 Daucus carota HOM05D000913 ORTHO05D000687 5.2e-06 54.7 110 39.1
Gohir.A04G003600 Gossypium hirsutum HOM05D000913 ORTHO05D000687 5.2e-06 54.7 102 38.2
Gorai.009G446400 Gossypium raimondii HOM05D000913 ORTHO05D000687 5.2e-06 54.7 107 41.1
Medtr3g082210 Medicago truncatula HOM05D000913 ORTHO05D000687 5.2e-06 54.7 93 46.2
Os02g0584700 Oryza sativa ssp. japonica HOM05D000913 ORTHO05D000687 5.2e-06 54.7 105 38.1
Prupe.6G030400 Prunus persica HOM05D000913 ORTHO05D000687 5.2e-06 54.7 103 42.7
Sabra16G0317700 Salix brachista HOM05D000913 ORTHO05D000687 5.2e-06 54.7 68 52.9
Cfa018626 Carpinus fangiana HOM05D000913 ORTHO05D000687 6.8e-06 54.3 74 50.0
Migut.M00531 Erythranthe guttata HOM05D000913 ORTHO05D000687 6.8e-06 54.3 105 38.1
Migut.M00555 Erythranthe guttata HOM05D000913 ORTHO05D000687 6.8e-06 54.3 105 38.1
Migut.M00556 Erythranthe guttata HOM05D000913 ORTHO05D000687 6.8e-06 54.3 105 38.1
Eucgr.F03666 Eucalyptus grandis HOM05D000913 ORTHO05D000687 6.8e-06 54.3 80 50.0
Gohir.A04G009400 Gossypium hirsutum HOM05D000913 ORTHO05D000687 6.8e-06 54.3 110 39.1
MBI16_g31487_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 6.8e-06 54.3 73 47.9
Os02g0585100 Oryza sativa ssp. japonica HOM05D000913 ORTHO05D000687 6.8e-06 54.3 75 45.3
RcHm_v2.0_Chr3g0484311 Rosa chinensis HOM05D000913 ORTHO05D000687 6.8e-06 54.3 74 48.6
GSVIVG01014802001 Vitis vinifera HOM05D000913 ORTHO05D000687 6.8e-06 54.3 75 49.3
GSVIVG01030135001 Vitis vinifera HOM05D000913 ORTHO05D000687 6.8e-06 54.3 110 40.9
arahy.Tifrunner.gnm1.ann1.483BUB Arachis hypogaea HOM05D000913 ORTHO05D000687 8.9e-06 53.9 98 39.8
FAN11G2899 Fragaria x ananassa HOM05D009841 ORTHO05D012869 8.9e-06 53.9 80 47.5
Gohir.D05G386200 Gossypium hirsutum HOM05D000913 ORTHO05D000687 8.9e-06 53.9 104 36.5
Manes.13G059333 Manihot esculenta HOM05D000913 ORTHO05D000687 8.9e-06 53.9 71 45.1
Os02g0584800 Oryza sativa ssp. japonica HOM05D000913 ORTHO05D000687 8.9e-06 53.9 107 39.3
Prupe.4G234700 Prunus persica HOM05D000913 ORTHO05D000687 8.9e-06 53.9 73 49.3
QL04p074133 Quercus lobata HOM05D000913 ORTHO05D000687 8.9e-06 53.9 118 41.5
QL04p074171 Quercus lobata HOM05D000913 ORTHO05D000687 8.9e-06 53.9 87 46.0
Thecc.07G006100 Theobroma cacao HOM05D000913 ORTHO05D000687 8.9e-06 53.9 74 50.0
GSVIVG01030137001 Vitis vinifera HOM05D000913 ORTHO05D000687 8.9e-06 53.9 107 37.4


User provided reference genes

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