Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022777 Camellia sinensis var. sinensis HOM05D001866 ORTHO05D001915 7.5e-49 196.8 96 100.0
CSS0021272 Camellia sinensis var. sinensis HOM05D001866 ORTHO05D001915 6.1e-43 177.2 96 90.6
CSS0014432 Camellia sinensis var. sinensis HOM05D001866 ORTHO05D001915 1.0e-42 176.4 106 85.8
Dinv21671 Davidia involucrata HOM05D001866 ORTHO05D001915 1.3e-08 63.2 37 75.7
Dinv39179 Davidia involucrata HOM05D001866 ORTHO05D001915 1.3e-08 63.2 37 75.7
Lsat_1_v5_gn_3_381 Lactuca sativa HOM05D001866 ORTHO05D001915 2.9e-08 62.0 38 68.4
Os05g0524200 Oryza sativa ssp. japonica HOM05D001866 ORTHO05D001915 2.9e-08 62.0 58 55.2
Manes.01G084600 Manihot esculenta HOM05D001866 ORTHO05D001915 3.8e-08 61.6 76 51.3
TWI81G0208 Tripterygium wilfordii HOM05D001866 ORTHO05D001915 3.8e-08 61.6 49 57.1
CSS0039928 Camellia sinensis var. sinensis HOM05D001866 ORTHO05D001915 4.9e-08 61.2 31 87.1
Thhalv10008212m.g Eutrema salsugineum HOM05D001866 ORTHO05D001915 6.4e-08 60.8 37 73.0
AL1G10160 Arabidopsis lyrata HOM05D001866 ORTHO05D001915 1.1e-07 60.1 37 70.3
CSS0006232 Camellia sinensis var. sinensis HOM05D001866 ORTHO05D001915 1.1e-07 60.1 82 50.0
Eucgr.E00396 Eucalyptus grandis HOM05D001866 ORTHO05D001915 1.1e-07 60.1 37 70.3
Sp1g00200 Schrenkiella parvula HOM05D001866 ORTHO05D001915 1.1e-07 60.1 37 70.3
Cc08_g11990 Coffea canephora HOM05D001866 ORTHO05D001915 1.4e-07 59.7 37 70.3
CDE06G1371 Ceratophyllum demersum HOM05D001866 ORTHO05D001915 1.9e-07 59.3 61 54.1
EL10Ac5g12324 Beta vulgaris HOM05D001866 ORTHO05D001915 2.4e-07 58.9 37 70.3
AUR62007127 Chenopodium quinoa HOM05D001866 ORTHO05D001915 2.4e-07 58.9 37 70.3
Peaxi162Scf00346g00411 Petunia axillaris HOM05D001866 ORTHO05D001915 2.4e-07 58.9 37 70.3
Sabra03G0051100 Salix brachista HOM05D001866 ORTHO05D001915 2.4e-07 58.9 37 70.3
Sabra14G0033300 Salix brachista HOM05D001866 ORTHO05D001915 2.4e-07 58.9 52 53.8
HPP92_020673 Vanilla planifolia HOM05D001866 ORTHO05D001915 2.4e-07 58.9 37 70.3
Migut.A01150 Erythranthe guttata HOM05D001866 ORTHO05D001915 3.2e-07 58.5 52 55.8
Os01g0739200 Oryza sativa ssp. japonica HOM05D001866 ORTHO05D001915 3.2e-07 58.5 37 62.2
Sabra03G0050000 Salix brachista HOM05D001866 ORTHO05D001915 3.2e-07 58.5 37 70.3
COL.COLO4_37103 Corchorus olitorius HOM05D001866 ORTHO05D001915 4.2e-07 58.2 31 74.2
TWI15G1228 Tripterygium wilfordii HOM05D001866 ORTHO05D001915 4.2e-07 58.2 37 67.6
Carub.0001s0014 Capsella rubella HOM05D001866 ORTHO05D001915 5.4e-07 57.8 37 64.9
HanXRQChr06g0164491 Helianthus annuus HOM05D001866 ORTHO05D001915 5.4e-07 57.8 38 68.4
Sc22g0001020 Simmondsia chinensis HOM05D001866 ORTHO05D001915 5.4e-07 57.8 37 64.9
Solyc06g066760.3 Solanum lycopersicum HOM05D001866 ORTHO05D001915 5.4e-07 57.8 37 67.6
Solyc08g078270.3 Solanum lycopersicum HOM05D001866 ORTHO05D001915 5.4e-07 57.8 37 67.6
Sopen06g025040 Solanum pennellii HOM05D001866 ORTHO05D001915 5.4e-07 57.8 37 67.6
Sopen08g026770 Solanum pennellii HOM05D001866 ORTHO05D001915 5.4e-07 57.8 37 67.6
PGSC0003DMG400026263 Solanum tuberosum HOM05D001866 ORTHO05D001915 5.4e-07 57.8 37 67.6
Glyma.17G144900 Glycine max HOM05D001866 ORTHO05D001915 7.1e-07 57.4 58 51.7
Nn6g33845 Nelumbo nucifera HOM05D001866 ORTHO05D001915 7.1e-07 57.4 30 80.0
arahy.Tifrunner.gnm1.ann1.M9MJUZ Arachis hypogaea HOM05D001866 ORTHO05D001915 9.3e-07 57.0 52 53.8
CSS0006017 Camellia sinensis var. sinensis HOM05D001866 ORTHO05D020233 9.3e-07 57.0 45 62.2
CDE05G3129 Ceratophyllum demersum HOM05D001866 ORTHO05D001915 9.3e-07 57.0 94 40.4
Gohir.A11G027700 Gossypium hirsutum HOM05D001866 ORTHO05D001915 9.3e-07 57.0 30 76.7
Gohir.D11G026900 Gossypium hirsutum HOM05D001866 ORTHO05D001915 9.3e-07 57.0 30 76.7
Gorai.007G029400 Gossypium raimondii HOM05D001866 ORTHO05D001915 9.3e-07 57.0 30 76.7
Hma1.2p1_1196F.1_g266050 Hydrangea macrophylla HOM05D001866 ORTHO05D001915 9.3e-07 57.0 31 83.9
Hma1.2p1_1335F.1_g276380 Hydrangea macrophylla HOM05D001866 ORTHO05D001915 9.3e-07 57.0 31 83.9
Nitab4.5_0002601g0040 Nicotiana tabacum HOM05D001866 ORTHO05D001915 9.3e-07 57.0 37 67.6
Potri.002G136700 Populus trichocarpa HOM05D001866 ORTHO05D001915 9.3e-07 57.0 52 53.8
Potri.003G080000 Populus trichocarpa HOM05D001866 ORTHO05D001915 9.3e-07 57.0 37 67.6
Hund14521 Selenicereus undatus HOM05D001866 ORTHO05D001915 9.3e-07 57.0 37 67.6
vmacro00016 Vaccinium macrocarpon HOM05D001866 ORTHO05D001915 9.3e-07 57.0 32 78.1
vmacro23318 Vaccinium macrocarpon HOM05D001866 ORTHO05D001915 9.3e-07 57.0 32 78.1
HPP92_006387 Vanilla planifolia HOM05D001866 ORTHO05D001915 9.3e-07 57.0 60 50.0
BcaB02g09400 Brassica carinata HOM05D001866 ORTHO05D001915 1.2e-06 56.6 38 63.2
CAN.G1312.17 Capsicum annuum HOM05D001866 ORTHO05D001915 1.2e-06 56.6 37 67.6
Cpa.g.sc89.61 Carica papaya HOM05D001866 ORTHO05D001915 1.2e-06 56.6 54 51.9
Lj4g0026383 Lotus japonicus HOM05D001866 ORTHO05D001915 1.2e-06 56.6 38 63.2
MD04G1061500 Malus domestica HOM05D001866 ORTHO05D001915 1.2e-06 56.6 37 64.9
Manes.02G042100 Manihot esculenta HOM05D001866 ORTHO05D001915 1.2e-06 56.6 37 67.6
MSTRG.17137 Avicennia marina HOM05D001866 ORTHO05D001915 1.6e-06 56.2 51 54.9
DCAR_008519 Daucus carota HOM05D001866 ORTHO05D001915 1.6e-06 56.2 52 55.8
Duzib138G1413 Durio zibethinus HOM05D001866 ORTHO05D001915 1.6e-06 56.2 37 64.9
ECA170G0004 Erigeron canadensis HOM05D001866 ORTHO05D001915 1.6e-06 56.2 60 46.7
Gohir.A11G076000 Gossypium hirsutum HOM05D001866 ORTHO05D001915 1.6e-06 56.2 37 64.9
Gohir.D11G080500 Gossypium hirsutum HOM05D001866 ORTHO05D001915 1.6e-06 56.2 37 64.9
Gorai.007G086300 Gossypium raimondii HOM05D001866 ORTHO05D001915 1.6e-06 56.2 37 64.9
Nn1g00893 Nelumbo nucifera HOM05D001866 ORTHO05D001915 1.6e-06 56.2 37 64.9
Oeu040697.1 Olea europaea HOM05D001866 ORTHO05D001915 1.6e-06 56.2 31 77.4
CDE05G0284 Ceratophyllum demersum HOM05D001866 ORTHO05D001915 2.1e-06 55.8 58 53.4
COL.COLO4_12426 Corchorus olitorius HOM05D001866 ORTHO05D001915 2.1e-06 55.8 46 54.3
Dinv44072 Davidia involucrata HOM05D001866 ORTHO05D002896 2.1e-06 55.8 37 64.9
Duzib084G0337 Durio zibethinus HOM05D001866 ORTHO05D001915 2.1e-06 55.8 37 62.2
Gohir.A06G068700 Gossypium hirsutum HOM05D001866 ORTHO05D001915 2.1e-06 55.8 31 77.4
Gorai.010G078800 Gossypium raimondii HOM05D001866 ORTHO05D001915 2.1e-06 55.8 31 77.4
Hma1.2p1_0674F.1_g201740 Hydrangea macrophylla HOM05D001866 ORTHO05D001915 2.1e-06 55.8 37 64.9
PSO063G0370 Papaver somniferum HOM05D001866 ORTHO05D001915 2.1e-06 55.8 50 56.0
PSO782G0803 Papaver somniferum HOM05D001866 ORTHO05D001915 2.1e-06 55.8 50 56.0
Potri.014G045500 Populus trichocarpa HOM05D001866 ORTHO05D001915 2.1e-06 55.8 52 53.8
Zm00001eb293560 Zea mays HOM05D001866 ORTHO05D001915 2.1e-06 55.8 37 64.9
Atru.chr5.158 Acer truncatum HOM05D001866 ORTHO05D001915 2.7e-06 55.5 31 74.2
HanXRQChr03g0093181 Helianthus annuus HOM05D001866 ORTHO05D001915 2.7e-06 55.5 60 48.3
Psat4g073560 Pisum sativum HOM05D001866 ORTHO05D001915 2.7e-06 55.5 52 51.9
Prupe.5G063900 Prunus persica HOM05D001866 ORTHO05D001915 2.7e-06 55.5 30 76.7
Thecc.01G392700 Theobroma cacao HOM05D001866 ORTHO05D001915 2.7e-06 55.5 31 74.2
Thecc.09G097500 Theobroma cacao HOM05D001866 ORTHO05D001915 2.7e-06 55.5 37 64.9
TPR.G37672 Trifolium pratense HOM05D001866 ORTHO05D001915 2.7e-06 55.5 52 51.9
Actinidia12152 Actinidia chinensis HOM05D001866 ORTHO05D001915 3.5e-06 55.1 54 50.0
Aa31LG9G15060 Aethionema arabicum HOM05D001866 ORTHO05D001915 3.5e-06 55.1 37 62.2
BcaC01g05714 Brassica carinata HOM05D001866 ORTHO05D001915 3.5e-06 55.1 52 51.9
BolC3t14693H Brassica oleracea HOM05D001866 ORTHO05D001915 3.5e-06 55.1 52 51.9
Ciclev10024461m.g Citrus clementina HOM05D001866 ORTHO05D001915 3.5e-06 55.1 52 51.9
MD06G1055300 Malus domestica HOM05D001866 ORTHO05D001915 3.5e-06 55.1 37 62.2
PSO675G5033 Papaver somniferum HOM05D001866 ORTHO05D001915 3.5e-06 55.1 30 73.3
arahy.Tifrunner.gnm1.ann1.F69WBS Arachis hypogaea HOM05D001866 ORTHO05D001915 4.6e-06 54.7 52 51.9
Gohir.D06G067300 Gossypium hirsutum HOM05D001866 ORTHO05D001915 4.6e-06 54.7 31 74.2
Rhsim07G0034800 Rhododendron simsii HOM05D001866 ORTHO05D001915 4.6e-06 54.7 54 51.9
TWI60G1074 Tripterygium wilfordii HOM05D001866 ORTHO05D001915 4.6e-06 54.7 36 66.7
Aqoxy7G01370 Aquilegia oxysepala HOM05D001866 ORTHO05D001915 6.0e-06 54.3 37 64.9
CSS0002338 Camellia sinensis var. sinensis HOM05D002499 ORTHO05D002812 6.0e-06 54.3 26 92.3
COL.COLO4_18278 Corchorus olitorius HOM05D001866 ORTHO05D001915 6.0e-06 54.3 31 74.2
Nitab4.5_0007283g0070 Nicotiana tabacum HOM05D001866 ORTHO05D001915 6.0e-06 54.3 37 64.9
PGSC0003DMG400016539 Solanum tuberosum HOM05D001866 ORTHO05D001915 6.0e-06 54.3 32 71.9
Thecc.03G246600 Theobroma cacao HOM05D001866 ORTHO05D001915 6.0e-06 54.3 37 59.5
TWI14G0913 Tripterygium wilfordii HOM05D001866 ORTHO05D001915 6.0e-06 54.3 38 63.2
TWI14G1209 Tripterygium wilfordii HOM05D001866 ORTHO05D001915 6.0e-06 54.3 38 63.2
Atru.chr7.1497 Acer truncatum HOM05D001866 ORTHO05D001915 7.8e-06 53.9 37 64.9
Ah.07g198890 Amaranthus hybridus HOM05D001866 ORTHO05D001915 7.8e-06 53.9 37 67.6
MSTRG.10593 Avicennia marina HOM05D001866 ORTHO05D001915 7.8e-06 53.9 37 67.6
BcaB01g03887 Brassica carinata HOM05D001866 ORTHO05D001915 7.8e-06 53.9 37 62.2
BcaC02g11689 Brassica carinata HOM05D001866 ORTHO05D001915 7.8e-06 53.9 37 62.2
C03p22920 Brassica napus HOM05D001866 ORTHO05D001915 7.8e-06 53.9 37 62.2
BolC4t22881H Brassica oleracea HOM05D001866 ORTHO05D001915 7.8e-06 53.9 37 62.2
BraA03t11219Z Brassica rapa HOM05D001866 ORTHO05D001915 7.8e-06 53.9 37 62.2
CARHR129920 Cardamine hirsuta HOM05D001866 ORTHO05D001915 7.8e-06 53.9 37 62.2
PSO732G0567 Papaver somniferum HOM05D001866 ORTHO05D001915 7.8e-06 53.9 30 73.3
Potri.001G154700 Populus trichocarpa HOM05D001866 ORTHO05D001915 7.8e-06 53.9 37 67.6


User provided reference genes

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