Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022754 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D109566 1.1e-41 172.9 88 100.0
CSS0040812 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D111646 1.9e-38 162.2 88 95.5
CSS0009431 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D113607 3.7e-26 121.3 89 74.2
CSS0001366 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112087 1.1e-25 119.8 89 73.0
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 9.3e-22 106.7 62 88.7
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 9.3e-22 106.7 62 88.7
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 3.5e-21 104.8 62 85.5
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 3.0e-20 101.7 62 85.5
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 3.0e-20 101.7 62 85.5
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 8.7e-20 100.1 61 83.6
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 2.5e-19 98.6 62 80.6
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 9.7e-19 96.7 62 77.4
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 2.4e-17 92.0 62 77.4
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 1.0e-15 86.7 59 76.3
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 8.5e-15 83.6 62 72.6
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 1.4e-14 82.8 62 69.4
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 1.9e-14 82.4 62 66.1
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 2.5e-14 82.0 61 65.6
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 4.2e-14 81.3 63 68.3
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 5.5e-14 80.9 56 73.2
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 9.4e-14 80.1 55 76.4
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 9.4e-14 80.1 64 65.6
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 1.2e-13 79.7 55 74.5
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 2.7e-13 78.6 63 66.7
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 3.6e-13 78.2 54 74.1
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 3.6e-13 78.2 63 65.1
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 3.6e-13 78.2 63 68.3
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 3.6e-13 78.2 62 62.9
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 7.9e-13 77.0 55 74.5
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 7.9e-13 77.0 54 75.9
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 7.9e-13 77.0 55 70.9
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 1.0e-12 76.6 55 70.9
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 1.0e-12 76.6 55 70.9
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 1.0e-12 76.6 55 70.9
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 1.0e-12 76.6 61 63.9
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 1.8e-12 75.9 55 67.3
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 1.8e-12 75.9 55 69.1
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 2.3e-12 75.5 60 61.7
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 2.3e-12 75.5 55 69.1
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 2.3e-12 75.5 55 70.9
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 3.0e-12 75.1 62 66.1
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 3.0e-12 75.1 62 66.1
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 6.7e-12 73.9 58 67.2
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 8.8e-12 73.6 61 60.7
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 1.5e-11 72.8 55 65.5
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 1.5e-11 72.8 62 59.7
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 2.0e-11 72.4 61 55.7
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 2.0e-11 72.4 61 60.7
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 2.5e-11 72.0 52 67.3
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 4.3e-11 71.2 55 61.8
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 7.4e-11 70.5 58 62.1
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 7.4e-11 70.5 55 65.5
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 9.7e-11 70.1 72 54.2
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 1.3e-10 69.7 52 65.4
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 1.3e-10 69.7 56 64.3
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 1.3e-10 69.7 49 71.4
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 2.2e-10 68.9 55 61.8
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 2.8e-10 68.6 53 64.2
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 6.3e-10 67.4 59 54.2
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 1.1e-09 66.6 56 58.9
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 1.1e-09 66.6 55 63.6
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 1.4e-09 66.2 61 50.8
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 1.4e-09 66.2 61 57.4
AUR62007419 Chenopodium quinoa HOM05D004914 ORTHO05D006512 1.8e-09 65.9 52 61.5
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 1.8e-09 65.9 55 63.6
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 2.4e-09 65.5 55 60.0
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 3.1e-09 65.1 47 68.1
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 3.1e-09 65.1 59 52.5
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 3.1e-09 65.1 43 76.7
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 4.1e-09 64.7 59 52.5
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 4.1e-09 64.7 55 60.0
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 6.9e-09 63.9 57 59.6
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 9.1e-09 63.5 57 56.1
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 9.1e-09 63.5 57 56.1
PGSC0003DMG402007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 9.1e-09 63.5 57 56.1
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 1.2e-08 63.2 50 64.0
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 2.6e-08 62.0 50 62.0
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 7.7e-08 60.5 58 48.3
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 8.5e-07 57.0 51 54.9
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 1.1e-06 56.6 59 50.8
SEGI_18257 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.4e-06 56.2 55 50.9
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 5.5e-06 54.3 51 52.9
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 7.2e-06 53.9 51 51.0
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 9.4e-06 53.5 52 48.1


User provided reference genes

Program Settings