Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022748 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.2e-68 263.1 133 100.0
CSS0028579 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 7.6e-68 260.4 132 99.2
CSS0005386 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.1e-66 256.5 132 97.7
CSS0031650 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.1e-66 256.5 132 97.7
CSS0022331 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 2.0e-60 235.7 132 88.6
Dinv25238 Davidia involucrata HOM05D005450 ORTHO05D006880 3.4e-60 235.0 132 86.4
Rhsim11G0018700 Rhododendron simsii HOM05D005450 ORTHO05D006880 1.0e-59 233.4 131 86.3
vmacro00310 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 8.5e-59 230.3 131 86.3
Actinidia25982 Actinidia chinensis HOM05D005450 ORTHO05D006880 1.1e-58 229.9 132 85.6
Hma1.2p1_0303F.1_g118850 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 3.2e-58 228.4 132 83.3
Hma1.2p1_0303F.1_g118860 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 3.2e-58 228.4 132 83.3
Actinidia03357 Actinidia chinensis HOM05D005450 ORTHO05D006880 1.6e-57 226.1 132 84.8
TWI81G0857 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 3.0e-56 221.9 132 79.5
Nn3g19446 Nelumbo nucifera HOM05D005450 ORTHO05D006880 5.1e-56 221.1 132 81.1
arahy.Tifrunner.gnm1.ann1.95XRJP Arachis hypogaea HOM05D005450 ORTHO05D006880 6.7e-56 220.7 132 80.3
arahy.Tifrunner.gnm1.ann1.M4GMJK Arachis hypogaea HOM05D005450 ORTHO05D006880 6.7e-56 220.7 132 80.3
Glyma.01G016900 Glycine max HOM05D005450 ORTHO05D006880 1.5e-55 219.5 132 81.1
PGR031G1299 Punica granatum HOM05D005450 ORTHO05D006880 1.5e-55 219.5 132 78.0
GSVIVG01013130001 Vitis vinifera HOM05D005450 ORTHO05D006880 1.5e-55 219.5 133 80.5
Glyma.09G205900 Glycine max HOM05D005450 ORTHO05D006880 3.3e-55 218.4 132 80.3
Phvul.002G139900 Phaseolus vulgaris HOM05D005450 ORTHO05D006880 4.3e-55 218.0 131 80.9
HanXRQChr04g0099011 Helianthus annuus HOM05D005450 ORTHO05D006880 5.7e-55 217.6 130 81.5
ECA233G1178 Erigeron canadensis HOM05D005450 ORTHO05D006880 2.2e-54 215.7 132 78.8
TWI60G0421 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 2.2e-54 215.7 132 77.3
Psat2g137240 Pisum sativum HOM05D005450 ORTHO05D006880 2.8e-54 215.3 132 78.0
Sc22g0001610 Simmondsia chinensis HOM05D005450 ORTHO05D006880 2.8e-54 215.3 132 78.8
CiPaw.11G095800 Carya illinoinensis HOM05D005450 ORTHO05D006880 3.7e-54 214.9 132 78.0
Lj2A234T41 Lonicera japonica HOM05D005450 ORTHO05D006880 3.7e-54 214.9 133 79.7
VMungo1215G2703 Vigna mungo HOM05D005450 ORTHO05D006880 3.7e-54 214.9 131 79.4
Lsat_1_v5_gn_6_4021 Lactuca sativa HOM05D005450 ORTHO05D006880 4.8e-54 214.5 133 78.9
Cc08_g03160 Coffea canephora HOM05D005450 ORTHO05D006880 6.3e-54 214.2 132 78.0
HanXRQChr13g0395441 Helianthus annuus HOM05D005450 ORTHO05D006880 6.3e-54 214.2 131 77.9
SGA_v2.0_scaffold6G03148 Striga asiatica HOM05D005450 ORTHO05D001776 6.3e-54 214.2 132 78.0
Atru.chr6.1648 Acer truncatum HOM05D005450 ORTHO05D006880 8.2e-54 213.8 132 75.0
Medtr5g029900 Medicago truncatula HOM05D005450 ORTHO05D006880 1.4e-53 213.0 132 77.3
Duzib205G1163 Durio zibethinus HOM05D005450 ORTHO05D006880 1.8e-53 212.6 130 80.0
Eucgr.D02212 Eucalyptus grandis HOM05D005450 ORTHO05D006880 1.8e-53 212.6 131 76.3
MSTRG.1990 Avicennia marina HOM05D005450 ORTHO05D006880 2.4e-53 212.2 132 78.0
QL12p004713 Quercus lobata HOM05D005450 ORTHO05D006880 2.4e-53 212.2 132 77.3
Cpa.g.c28481.1 Carica papaya HOM05D005450 ORTHO05D006880 9.1e-53 210.3 131 77.9
TAR375G0838 Trochodendron aralioides HOM05D005450 ORTHO05D006880 9.1e-53 210.3 132 78.0
Rhsim07G0129900 Rhododendron simsii HOM05D005450 ORTHO05D006880 1.2e-52 209.9 133 78.9
Lalb_Chr05g0215901 Lupinus albus HOM05D005450 ORTHO05D006880 1.5e-52 209.5 132 77.3
Thecc.03G305800 Theobroma cacao HOM05D005450 ORTHO05D006880 2.0e-52 209.1 131 76.3
Lj2g0023622 Lotus japonicus HOM05D005450 ORTHO05D006880 2.6e-52 208.8 132 77.3
TPR.G8114 Trifolium pratense HOM05D005450 ORTHO05D006880 2.6e-52 208.8 132 75.8
Manes.15G193000 Manihot esculenta HOM05D005450 ORTHO05D006880 3.4e-52 208.4 133 75.9
Lalb_Chr16g0381251 Lupinus albus HOM05D005450 ORTHO05D006880 4.5e-52 208.0 132 77.3
Potri.001G140300 Populus trichocarpa HOM05D005450 ORTHO05D006880 4.5e-52 208.0 134 76.1
Potri.003G093900 Populus trichocarpa HOM05D005450 ORTHO05D006880 4.5e-52 208.0 134 77.6
CSS0005944 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 7.7e-52 207.2 108 99.1
Gohir.A12G207500 Gossypium hirsutum HOM05D005450 ORTHO05D006880 7.7e-52 207.2 131 74.8
Aqoxy3G02278 Aquilegia oxysepala HOM05D005450 ORTHO05D006880 2.2e-51 205.7 132 73.5
Gorai.008G225500 Gossypium raimondii HOM05D005450 ORTHO05D006880 2.9e-51 205.3 131 74.0
Hund11224 Selenicereus undatus HOM05D005450 ORTHO05D006880 2.9e-51 205.3 134 75.4
Peaxi162Scf00170g01229 Petunia axillaris HOM05D005450 ORTHO05D006880 3.8e-51 204.9 132 75.0
THA.LOC104806699 Tarenaya hassleriana HOM05D005450 ORTHO05D006880 3.8e-51 204.9 131 75.6
Sabra01G0109200 Salix brachista HOM05D005450 ORTHO05D006880 5.0e-51 204.5 134 75.4
DCAR_008245 Daucus carota HOM05D005450 ORTHO05D006880 6.5e-51 204.1 132 72.0
Gohir.D12G209900 Gossypium hirsutum HOM05D005450 ORTHO05D006880 6.5e-51 204.1 131 74.0
MBI04_g05750_MAGBIO Magnolia biondii HOM05D005450 ORTHO05D006880 6.5e-51 204.1 132 75.0
MD06G1037000 Malus domestica HOM05D005450 ORTHO05D006880 1.4e-50 203.0 132 74.2
AUR62018696 Chenopodium quinoa HOM05D005450 ORTHO05D006880 1.9e-50 202.6 134 73.1
PGSC0003DMG400017545 Solanum tuberosum HOM05D005450 ORTHO05D006880 2.5e-50 202.2 132 72.7
Sed0009079 Sechium edule HOM05D005450 ORTHO05D006880 3.2e-50 201.8 132 72.7
Aa31LG9G6020 Aethionema arabicum HOM05D005450 ORTHO05D006880 4.2e-50 201.4 131 71.8
CANSAT21G1200 Cannabis sativa HOM05D005450 ORTHO05D006880 4.2e-50 201.4 132 72.0
PSO063G4121 Papaver somniferum HOM05D005450 ORTHO05D006880 4.2e-50 201.4 131 74.0
PSO782G2687 Papaver somniferum HOM05D005450 ORTHO05D006880 4.2e-50 201.4 131 74.0
Sp2g11640 Schrenkiella parvula HOM05D005450 ORTHO05D006880 4.2e-50 201.4 131 72.5
ClCG10G001470 Citrullus lanatus HOM05D005450 ORTHO05D006880 5.5e-50 201.1 134 73.1
Sopen08g025210 Solanum pennellii HOM05D005450 ORTHO05D006880 5.5e-50 201.1 132 72.0
MELO3C013841.2 Cucumis melo HOM05D005450 ORTHO05D006880 7.2e-50 200.7 134 73.1
CsaV3_3G001550 Cucumis sativus L. HOM05D005450 ORTHO05D006880 7.2e-50 200.7 134 73.1
AUR62007307 Chenopodium quinoa HOM05D005450 ORTHO05D006880 9.4e-50 200.3 134 72.4
MD16G1272400 Malus domestica HOM05D005450 ORTHO05D006880 9.4e-50 200.3 132 72.7
Prupe.5G032300 Prunus persica HOM05D005450 ORTHO05D006880 9.4e-50 200.3 132 72.7
Actinidia14788 Actinidia chinensis HOM05D005450 ORTHO05D006880 1.6e-49 199.5 132 76.5
Solyc08g076660.3 Solanum lycopersicum HOM05D005450 ORTHO05D006880 1.6e-49 199.5 132 71.2
ATR0665G143 Amborella trichopoda HOM05D005450 ORTHO05D006880 2.1e-49 199.1 130 74.6
EL10Ac5g12080 Beta vulgaris HOM05D005450 ORTHO05D006880 3.6e-49 198.4 134 72.4
Ciclev10014807m.g Citrus clementina HOM05D005450 ORTHO05D006880 1.0e-48 196.8 128 71.1
vmacro14185 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 1.4e-48 196.4 137 75.9
Thhalv10000858m.g Eutrema salsugineum HOM05D005450 ORTHO05D006880 2.3e-48 195.7 131 71.0
Ca_25196_v3 Cicer arietinum L. HOM05D005450 ORTHO05D006880 3.9e-48 194.9 157 64.3
Ah.12g055200 Amaranthus hybridus HOM05D005450 ORTHO05D006880 6.7e-48 194.1 134 71.6
Carub.0008s0107 Capsella rubella HOM05D005450 ORTHO05D006880 8.8e-48 193.7 132 71.2
Sabra03G0063000 Salix brachista HOM05D005450 ORTHO05D006880 8.8e-48 193.7 135 74.8
AT5G46840 Arabidopsis thaliana HOM05D005450 ORTHO05D006880 1.1e-47 193.4 132 71.2
AL8G11490 Arabidopsis lyrata HOM05D005450 ORTHO05D006880 1.5e-47 193.0 132 70.5
A06p45580 Brassica napus HOM05D005450 ORTHO05D006880 2.6e-47 192.2 133 70.7
BolC7t43556H Brassica oleracea HOM05D005450 ORTHO05D006880 2.6e-47 192.2 133 70.7
BraA06t27430Z Brassica rapa HOM05D005450 ORTHO05D006880 2.6e-47 192.2 133 70.7
unitig_699.g19789 Utricularia gibba HOM05D005450 ORTHO05D001249 2.6e-47 192.2 132 72.0
BcaC06g34338 Brassica carinata HOM05D005450 ORTHO05D006880 5.7e-47 191.0 133 69.9
C07p30200 Brassica napus HOM05D005450 ORTHO05D006880 5.7e-47 191.0 133 69.9
CARHR174610 Cardamine hirsuta HOM05D005450 ORTHO05D006880 7.4e-47 190.7 132 69.7
BcaC06g31440 Brassica carinata HOM05D005450 ORTHO05D006880 9.7e-47 190.3 133 69.9
FAN08G0023 Fragaria x ananassa HOM05D005450 ORTHO05D006880 2.2e-46 189.1 132 68.9
CDE11G1012 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 3.7e-46 188.3 128 68.8
FvH4_5g22460 Fragaria vesca HOM05D005450 ORTHO05D006880 3.7e-46 188.3 132 68.9
FAN18G0707 Fragaria x ananassa HOM05D005450 ORTHO05D006880 3.7e-46 188.3 132 68.9
FAN04G1305 Fragaria x ananassa HOM05D005450 ORTHO05D006880 6.3e-46 187.6 132 68.2
FAN18G2323 Fragaria x ananassa HOM05D005450 ORTHO05D006880 6.3e-46 187.6 132 68.2
RcHm_v2.0_Chr7g0210251 Rosa chinensis HOM05D005450 ORTHO05D006880 8.2e-46 187.2 132 67.4
FAN13G0945 Fragaria x ananassa HOM05D005450 ORTHO05D006880 1.4e-45 186.4 132 67.4
Os03g0854300 Oryza sativa ssp. japonica HOM05D005450 ORTHO05D006880 1.8e-45 186.0 125 72.8
Migut.E00784 Erythranthe guttata HOM05D005450 ORTHO05D006880 5.3e-45 184.5 132 70.5
Zm00001eb210550 Zea mays HOM05D005450 ORTHO05D006880 1.5e-44 183.0 128 68.0
HPP92_020907 Vanilla planifolia HOM05D005450 ORTHO05D006880 8.5e-43 177.2 132 65.2
COL.COLO4_16985 Corchorus olitorius HOM05D005450 ORTHO05D006880 1.2e-41 173.3 106 77.4
Nitab4.5_0000353g0110 Nicotiana tabacum HOM05D005450 ORTHO05D006880 3.0e-40 168.7 132 65.2
Nitab4.5_0002203g0010 Nicotiana tabacum HOM05D005450 ORTHO05D006880 1.7e-38 162.9 132 65.2
Haze_08190 Corylus avellana HOM05D005450 ORTHO05D006880 3.5e-36 155.2 132 62.1
AagrBONN_evm.TU.Sc2ySwM_228.2336 Anthoceros agrestis HOM05D005450 ORTHO05D006880 2.2e-27 125.9 124 49.2
Pp3c17_19260 Physcomitrium patens HOM05D005450 ORTHO05D006880 2.5e-26 122.5 122 54.1
BcaC03g16894 Brassica carinata HOM05D005450 ORTHO05D006880 3.2e-26 122.1 130 52.3
CDE11G0708 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 2.1e-25 119.4 130 45.4
arahy.Tifrunner.gnm1.ann1.HL18KG Arachis hypogaea HOM05D005450 ORTHO05D006880 8.0e-25 117.5 74 77.0
Mapoly0168s0008 Marchantia polymorpha HOM05D005450 ORTHO05D006880 2.0e-23 112.8 131 43.5
CBR_g19667 Chara braunii HOM05D005450 ORTHO05D006880 3.4e-23 112.1 139 48.2
SEGI_27441 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 2.1e-17 92.8 73 60.3
C02p47920 Brassica napus HOM05D005450 ORTHO05D006880 6.1e-17 91.3 57 73.7
BolC2t10824H Brassica oleracea HOM05D005450 ORTHO05D006880 6.1e-17 91.3 57 73.7
MCO09G223 Micromonas commoda HOM05D005450 ORTHO05D006880 4.0e-16 88.6 134 41.0
SEGI_20635 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 2.0e-12 76.3 59 61.0
Actinidia09179 Actinidia chinensis HOM05D005450 ORTHO05D006880 4.5e-12 75.1 58 65.5
Cre16.g659150 Chlamydomonas reinhardtii HOM05D005450 ORTHO05D006880 1.1e-10 70.5 117 41.0
BcaC03g16897 Brassica carinata HOM05D005450 ORTHO05D006880 9.8e-07 57.4 123 35.8
BolC2t10828H Brassica oleracea HOM05D005450 ORTHO05D006880 9.8e-07 57.4 123 35.8
C09p29040 Brassica napus HOM05D005450 ORTHO05D006880 2.2e-06 56.2 41 63.4


User provided reference genes

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