Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 3.5e-305 1050.8 541 100.0
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 3.5e-305 1050.8 541 100.0
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 1.7e-243 845.9 544 80.9
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 3.1e-240 835.1 543 79.2
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 2.2e-238 828.9 543 78.5
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 1.2e-231 806.6 542 75.5
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 7.8e-228 793.9 541 75.6
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 7.8e-228 793.9 540 75.7
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 5.6e-226 787.7 542 74.0
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 7.3e-226 787.3 542 74.0
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 1.2e-223 780.0 547 73.3
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 3.4e-223 778.5 547 73.1
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 4.4e-215 751.5 541 71.7
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 1.1e-210 736.9 544 68.9
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 2.1e-209 732.6 542 70.7
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 4.8e-209 731.5 544 70.0
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 1.1e-208 730.3 541 70.6
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 5.8e-207 724.5 541 69.7
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 9.9e-207 723.8 539 69.8
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 1.3e-206 723.4 541 69.7
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 1.9e-205 719.5 541 69.5
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 3.2e-205 718.8 541 69.5
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 3.2e-205 718.8 542 68.6
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 3.2e-205 718.8 541 70.1
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 1.2e-204 716.8 543 68.5
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 2.1e-204 716.1 541 68.2
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 1.3e-203 713.4 541 68.9
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 3.9e-203 711.8 537 68.3
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 5.1e-203 711.4 542 67.9
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 1.5e-202 709.9 541 69.1
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 1.9e-202 709.5 543 68.1
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 3.3e-202 708.8 525 69.9
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 4.3e-202 708.4 541 69.1
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 7.4e-202 707.6 542 67.9
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 1.6e-201 706.4 544 68.6
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 1.1e-200 703.7 542 69.0
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 1.1e-200 703.7 544 67.3
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 1.1e-200 703.7 543 67.8
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 1.1e-200 703.7 541 67.3
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 1.8e-200 703.0 543 67.2
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 2.4e-200 702.6 586 64.2
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 4.0e-200 701.8 542 67.3
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 5.3e-200 701.4 542 67.0
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 9.0e-200 700.7 540 66.7
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 1.2e-199 700.3 541 67.7
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 1.5e-199 699.9 541 67.7
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 4.5e-199 698.4 541 67.5
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 9.9e-199 697.2 542 67.2
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 8.4e-198 694.1 526 68.1
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 2.4e-197 692.6 585 63.6
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 5.5e-197 691.4 546 65.8
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 1.2e-196 690.3 544 65.8
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 1.6e-196 689.9 547 66.5
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 7.9e-196 687.6 544 67.5
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 1.8e-195 686.4 586 62.1
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 2.3e-195 686.0 541 66.4
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 3.9e-195 685.3 541 66.0
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 5.1e-195 684.9 525 67.2
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 2.5e-194 682.6 541 65.8
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 2.5e-194 682.6 533 64.9
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 1.6e-193 679.9 542 65.9
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 1.4e-192 676.8 545 65.3
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 1.3e-190 670.2 547 64.7
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 1.7e-190 669.8 547 65.3
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 6.5e-190 667.9 545 64.2
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 2.1e-188 662.9 537 65.2
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 1.1e-186 657.1 550 61.6
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 5.7e-186 654.8 542 62.7
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 9.6e-186 654.1 545 62.2
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 8.2e-185 651.0 515 66.2
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 1.4e-184 650.2 542 63.3
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 2.0e-183 646.4 415 79.3
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 2.0e-183 646.4 543 63.4
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 1.0e-182 644.0 544 61.4
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 2.2e-182 642.9 544 61.2
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.4e-181 640.2 586 59.2
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 1.9e-181 639.8 537 61.6
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 2.5e-181 639.4 546 61.4
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 4.2e-181 638.6 545 60.9
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 5.5e-181 638.3 586 58.9
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 7.2e-181 637.9 545 60.9
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 7.2e-181 637.9 586 59.2
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.2e-180 637.1 586 59.0
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 4.6e-180 635.2 545 60.7
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 1.8e-179 633.3 543 62.1
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.3e-179 632.9 586 58.7
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 1.1e-178 630.6 531 62.1
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 1.9e-178 629.8 543 61.9
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 1.6e-177 626.7 545 59.6
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 1.1e-176 624.0 551 60.4
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.0e-175 619.8 587 57.2
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 4.5e-175 618.6 535 61.5
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 7.7e-175 617.8 547 59.4
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 3.8e-174 615.5 546 59.7
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 1.4e-173 613.6 546 59.7
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 2.1e-172 609.8 536 60.4
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 4.8e-169 598.6 539 57.0
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 8.2e-169 597.8 572 57.7
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 1.0e-155 554.3 553 54.4
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 8.8e-155 551.2 553 54.8
Sc01g0003490 Simmondsia chinensis HOM05D001925 ORTHO05D005701 8.5e-150 534.6 430 65.6
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 5.0e-142 508.8 412 64.1
CsaV3_6G000620 Cucumis sativus L. HOM05D001925 ORTHO05D005701 1.4e-139 500.7 421 62.5
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 9.2e-136 488.0 489 53.0
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 5.7e-130 468.8 544 48.7
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 2.8e-124 449.9 360 64.2
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 9.8e-122 441.4 468 52.6
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 9.8e-122 441.4 544 49.8
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 9.2e-120 434.9 492 49.8
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 4.6e-119 432.6 571 42.2
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 2.5e-117 426.8 321 70.4
arahy.Tifrunner.gnm1.ann1.SID920 Arachis hypogaea HOM05D001925 ORTHO05D005701 6.4e-113 412.1 426 55.4
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 8.1e-108 395.2 358 58.1
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 1.1e-101 374.8 318 62.9
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 2.1e-100 370.5 498 41.4
arahy.Tifrunner.gnm1.ann1.D25PMP Arachis hypogaea HOM05D001925 ORTHO05D005701 2.2e-97 360.5 425 49.4
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 2.3e-94 350.5 534 39.5
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 1.1e-93 348.2 508 43.5
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 3.3e-93 346.7 508 43.5
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 2.4e-91 340.5 348 55.5
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 2.9e-89 333.6 506 40.1
Potri.001G135975 Populus trichocarpa HOM05D001925 ORTHO05D005701 5.4e-88 329.3 264 61.0
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 6.4e-81 305.8 489 37.4
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 1.3e-68 265.0 275 56.0
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 1.1e-67 261.9 167 77.8
arahy.Tifrunner.gnm1.ann1.IM3547 Arachis hypogaea HOM05D001925 ORTHO05D005701 6.7e-62 242.7 217 61.8
arahy.Tifrunner.gnm1.ann1.FEJ64N Arachis hypogaea HOM05D001925 ORTHO05D005701 2.5e-61 240.7 223 61.9
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 1.1e-45 188.7 109 87.2
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 6.5e-41 172.9 169 59.8
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 2.7e-39 167.5 123 71.5
FvH4_2g10060 Fragaria vesca HOM05D001925 ORTHO05D005701 5.3e-35 153.3 205 49.3
FAN24G1219 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.5e-34 150.2 105 73.3
MCO11G226 Micromonas commoda HOM05D001925 ORTHO05D005701 1.3e-33 148.7 580 25.2
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 2.5e-32 144.4 134 61.2
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 8.8e-30 136.0 89 76.4
FAN15G3430 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.5e-29 135.2 104 67.3
FvH4_2g10061 Fragaria vesca HOM05D001925 ORTHO05D005701 4.4e-29 133.7 97 71.1
A09p50030 Brassica napus HOM05D001925 ORTHO05D005701 1.7e-28 131.7 109 62.4
Zm00001eb057980 Zea mays HOM05D001925 ORTHO05D005701 2.2e-28 131.3 453 29.1
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 4.8e-28 130.2 115 59.1
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 4.8e-28 130.2 590 25.8
PRCOL_00005952 Prasinoderma coloniale HOM05D001925 ORTHO05D005701 1.7e-25 121.7 496 25.8
arahy.Tifrunner.gnm1.ann1.ZHBQ27 Arachis hypogaea HOM05D002506 ORTHO05D002879 8.0e-23 112.8 87 70.1
MBI04_g47116_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 3.6e-15 87.4 227 31.7
Thhalv10027287m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 6.8e-14 83.2 85 47.1
C09p49930 Brassica napus HOM05D001925 ORTHO05D039571 2.4e-11 74.7 122 41.8
BcaC07g40074 Brassica carinata HOM05D001925 ORTHO05D005701 1.7e-09 68.6 77 53.2
FAN22G1210 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.7e-07 60.5 126 32.5
Cre07.g355200 Chlamydomonas reinhardtii HOM05D001925 ORTHO05D005701 2.3e-06 58.2 460 22.0


User provided reference genes

Program Settings