Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022741 Camellia sinensis var. sinensis HOM05D005119 ORTHO05D006338 1.2e-121 439.9 230 100.0
Dinv05232 Davidia involucrata HOM05D005119 ORTHO05D006338 2.5e-111 405.6 230 92.2
Dinv25746 Davidia involucrata HOM05D005119 ORTHO05D006338 3.3e-111 405.2 230 93.0
Eucgr.B03785 Eucalyptus grandis HOM05D005119 ORTHO05D006338 4.3e-111 404.8 227 91.6
Lj2A941G6 Lonicera japonica HOM05D005119 ORTHO05D006338 4.3e-111 404.8 228 93.0
Oeu026660.1 Olea europaea HOM05D005119 ORTHO05D006338 5.7e-111 404.4 226 92.9
RcHm_v2.0_Chr5g0049761 Rosa chinensis HOM05D005119 ORTHO05D006338 5.7e-111 404.4 227 91.6
SalBow3G0587 Salvia bowleyana HOM05D005119 ORTHO05D006338 5.7e-111 404.4 228 93.0
Rhsim13G0201000 Rhododendron simsii HOM05D005119 ORTHO05D006338 9.7e-111 403.7 232 91.8
Sopen11g029200 Solanum pennellii HOM05D005119 ORTHO05D006338 9.7e-111 403.7 228 92.5
PGSC0003DMG400018703 Solanum tuberosum HOM05D005119 ORTHO05D006338 9.7e-111 403.7 228 92.5
Atru.chr3.2860 Acer truncatum HOM05D005119 ORTHO05D006338 4.8e-110 401.4 230 91.3
Actinidia07012 Actinidia chinensis HOM05D005119 ORTHO05D006338 6.3e-110 401.0 228 94.7
Prupe.6G153600 Prunus persica HOM05D005119 ORTHO05D006338 6.3e-110 401.0 230 90.0
PGR102G2321 Punica granatum HOM05D005119 ORTHO05D006338 6.3e-110 401.0 230 90.4
FAN21G1454 Fragaria x ananassa HOM05D005119 ORTHO05D006338 8.2e-110 400.6 230 90.9
Hma1.2p1_0218F.1_g092630 Hydrangea macrophylla HOM05D005119 ORTHO05D006338 8.2e-110 400.6 231 91.3
GSVIVG01037452001 Vitis vinifera HOM05D005119 ORTHO05D006338 8.2e-110 400.6 230 90.9
Cc01_g07550 Coffea canephora HOM05D005119 ORTHO05D006338 1.1e-109 400.2 227 93.0
FAN21G3401 Fragaria x ananassa HOM05D005119 ORTHO05D006338 1.4e-109 399.8 230 90.4
Thecc.09G337400 Theobroma cacao HOM05D005119 ORTHO05D006338 1.4e-109 399.8 230 91.3
Ca_06151_v3 Cicer arietinum L. HOM05D005119 ORTHO05D006338 2.4e-109 399.1 234 88.0
vmacro04109 Vaccinium macrocarpon HOM05D005119 ORTHO05D006338 3.1e-109 398.7 235 90.2
Peaxi162Scf00217g00811 Petunia axillaris HOM05D005119 ORTHO05D006338 9.0e-109 397.1 228 91.2
FAN16G2078 Fragaria x ananassa HOM05D005119 ORTHO05D006338 1.2e-108 396.7 228 89.9
Lalb_Chr17g0347491 Lupinus albus HOM05D005119 ORTHO05D006338 1.2e-108 396.7 230 89.1
SGA_v2.0_scaffold16G07568 Striga asiatica HOM05D005119 ORTHO05D006338 1.2e-108 396.7 225 92.0
Duzib170G0448 Durio zibethinus HOM05D005119 ORTHO05D006338 3.4e-108 395.2 230 89.6
CANSAT54G2327 Cannabis sativa HOM05D005119 ORTHO05D006338 7.7e-108 394.0 230 88.7
Nitab4.5_0010431g0020 Nicotiana tabacum HOM05D005119 ORTHO05D006338 7.7e-108 394.0 228 89.5
Psat2g022840 Pisum sativum HOM05D005119 ORTHO05D006338 7.7e-108 394.0 232 87.9
HanXRQChr13g0420891 Helianthus annuus HOM05D005119 ORTHO05D006338 1.0e-107 393.7 229 91.3
VMungo0647G2262 Vigna mungo HOM05D005119 ORTHO05D006338 1.0e-107 393.7 228 89.9
CAN.G864.4 Capsicum annuum HOM05D005119 ORTHO05D006338 1.3e-107 393.3 228 90.8
Ciclev10016530m.g Citrus clementina HOM05D005119 ORTHO05D006338 1.3e-107 393.3 231 90.0
MELO3C015629.2 Cucumis melo HOM05D005119 ORTHO05D006338 1.3e-107 393.3 231 88.3
Gohir.D08G008500 Gossypium hirsutum HOM05D005119 ORTHO05D006338 1.7e-107 392.9 230 89.6
Gorai.004G001700 Gossypium raimondii HOM05D005119 ORTHO05D006338 1.7e-107 392.9 230 89.6
Sopen01g004620 Solanum pennellii HOM05D005119 ORTHO05D006338 1.7e-107 392.9 228 91.2
PSO339G0009 Papaver somniferum HOM05D005119 ORTHO05D006338 2.9e-107 392.1 227 90.3
Potri.009G158800 Populus trichocarpa HOM05D005119 ORTHO05D006338 2.9e-107 392.1 231 90.9
ECA240G4195 Erigeron canadensis HOM05D005119 ORTHO05D006338 3.8e-107 391.7 231 89.2
Medtr5g087720 Medicago truncatula HOM05D005119 ORTHO05D006338 3.8e-107 391.7 223 89.2
Migut.N02419 Erythranthe guttata HOM05D005119 ORTHO05D006338 5.0e-107 391.3 227 91.2
Potri.004G196600 Populus trichocarpa HOM05D005119 ORTHO05D006338 5.0e-107 391.3 230 88.3
PGSC0003DMG400008707 Solanum tuberosum HOM05D005119 ORTHO05D006338 5.0e-107 391.3 228 90.8
AT5G21070 Arabidopsis thaliana HOM05D005119 ORTHO05D006338 6.5e-107 391.0 230 89.1
Glyma.02G274200 Glycine max HOM05D005119 ORTHO05D006338 8.5e-107 390.6 230 88.3
Phvul.008G207500 Phaseolus vulgaris HOM05D005119 ORTHO05D006338 8.5e-107 390.6 228 89.5
TAR636G0794 Trochodendron aralioides HOM05D005119 ORTHO05D006338 8.5e-107 390.6 230 89.1
unitig_27.g25021 Utricularia gibba HOM05D005119 ORTHO05D006338 8.5e-107 390.6 226 91.2
Manes.04G053600 Manihot esculenta HOM05D005119 ORTHO05D006338 1.1e-106 390.2 230 89.1
Aa31LG1G13700 Aethionema arabicum HOM05D005119 ORTHO05D006338 1.9e-106 389.4 230 89.6
TPR.G11644 Trifolium pratense HOM05D005119 ORTHO05D006338 1.9e-106 389.4 232 87.1
MSTRG.17662 Avicennia marina HOM05D005119 ORTHO05D006338 3.2e-106 388.7 234 88.9
Carub.0006s1937 Capsella rubella HOM05D005119 ORTHO05D006338 3.2e-106 388.7 230 88.7
Duzib168G2211 Durio zibethinus HOM05D005119 ORTHO05D006338 5.5e-106 387.9 230 88.3
AL6G32630 Arabidopsis lyrata HOM05D005119 ORTHO05D006338 9.4e-106 387.1 230 88.3
MSTRG.12410 Avicennia marina HOM05D005119 ORTHO05D006338 9.4e-106 387.1 234 88.5
PSO384G4010 Papaver somniferum HOM05D005119 ORTHO05D006338 9.4e-106 387.1 227 89.4
arahy.Tifrunner.gnm1.ann1.4E592X Arachis hypogaea HOM05D005119 ORTHO05D006338 1.2e-105 386.7 232 85.3
Thhalv10014597m.g Eutrema salsugineum HOM05D005119 ORTHO05D006338 1.2e-105 386.7 230 88.3
Sed0002058 Sechium edule HOM05D005119 ORTHO05D006338 1.2e-105 386.7 231 87.0
TWI79G0087 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 1.6e-105 386.3 230 89.6
ClCG03G014150 Citrullus lanatus HOM05D005119 ORTHO05D006338 2.1e-105 386.0 231 87.4
MD11G1180800 Malus domestica HOM05D005119 ORTHO05D006338 2.1e-105 386.0 230 87.4
FAN25G0803 Fragaria x ananassa HOM05D005119 ORTHO05D006338 2.7e-105 385.6 257 80.9
CARHR191800 Cardamine hirsuta HOM05D005119 ORTHO05D006338 3.6e-105 385.2 230 87.8
DCAR_002131 Daucus carota HOM05D005119 ORTHO05D006338 3.6e-105 385.2 228 89.0
C09p55010 Brassica napus HOM05D005119 ORTHO05D006338 4.6e-105 384.8 230 87.4
Glyma.14G041900 Glycine max HOM05D005119 ORTHO05D006338 4.6e-105 384.8 230 87.0
LjContig00564g0012096 Lotus japonicus HOM05D005119 ORTHO05D006338 4.6e-105 384.8 232 87.1
QL01p020410 Quercus lobata HOM05D005119 ORTHO05D006338 4.6e-105 384.8 229 90.0
Sed0001894 Sechium edule HOM05D005119 ORTHO05D006338 4.6e-105 384.8 231 87.4
arahy.Tifrunner.gnm1.ann1.JSP71L Arachis hypogaea HOM05D005119 ORTHO05D006338 6.1e-105 384.4 232 84.9
BcaB08g36485 Brassica carinata HOM05D005119 ORTHO05D006338 6.1e-105 384.4 230 87.0
Sp6g23450 Schrenkiella parvula HOM05D005119 ORTHO05D006338 7.9e-105 384.0 230 87.4
BcaB05g22789 Brassica carinata HOM05D005119 ORTHO05D006338 1.8e-104 382.9 230 87.8
TWI75G0877 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 1.8e-104 382.9 231 89.2
Manes.11G112200 Manihot esculenta HOM05D005119 ORTHO05D006338 2.3e-104 382.5 228 88.6
BolC9t58364H Brassica oleracea HOM05D005119 ORTHO05D006338 3.0e-104 382.1 230 87.0
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 3.0e-104 382.1 216 91.7
CsaV3_1G042110 Cucumis sativus L. HOM05D005119 ORTHO05D006338 3.0e-104 382.1 231 86.6
BcaC03g13824 Brassica carinata HOM05D005119 ORTHO05D006338 3.9e-104 381.7 230 87.4
Lj6g0018237 Lotus japonicus HOM05D005119 ORTHO05D006338 3.9e-104 381.7 230 85.7
BNapus_Darmor_BZH_scaffold_38p01200 Brassica napus HOM05D005119 ORTHO05D006338 5.1e-104 381.3 230 87.4
C02p10590 Brassica napus HOM05D005119 ORTHO05D006338 5.1e-104 381.3 230 87.4
BraA02t05611Z Brassica rapa HOM05D005119 ORTHO05D006338 5.1e-104 381.3 230 87.4
A10p19000 Brassica napus HOM05D005119 ORTHO05D006338 6.7e-104 380.9 230 86.5
BraA10t43978Z Brassica rapa HOM05D005119 ORTHO05D006338 6.7e-104 380.9 230 86.5
EL10Ac7g16218 Beta vulgaris HOM05D005119 ORTHO05D006338 1.1e-103 380.2 230 87.4
BolC2t07092H Brassica oleracea HOM05D005119 ORTHO05D006338 1.1e-103 380.2 230 87.0
Gohir.A05G101200 Gossypium hirsutum HOM05D005119 ORTHO05D006338 1.1e-103 380.2 230 87.4
Gorai.009G105100 Gossypium raimondii HOM05D005119 ORTHO05D006338 1.5e-103 379.8 230 87.4
THA.LOC104799587 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 1.5e-103 379.8 230 86.1
Gohir.D05G101000 Gossypium hirsutum HOM05D005119 ORTHO05D006338 2.5e-103 379.0 230 87.0
Nitab4.5_0001183g0030 Nicotiana tabacum HOM05D005119 ORTHO05D006338 9.7e-103 377.1 216 89.8
Aqoxy2G00066 Aquilegia oxysepala HOM05D005119 ORTHO05D006338 1.3e-102 376.7 229 86.9
Sc21g0006500 Simmondsia chinensis HOM05D005119 ORTHO05D006338 1.3e-102 376.7 230 87.4
Sabra04G0133300 Salix brachista HOM05D005119 ORTHO05D006338 2.2e-102 375.9 230 84.8
Hund18832 Selenicereus undatus HOM05D005119 ORTHO05D006338 2.2e-102 375.9 230 86.5
MBI19_g28105_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 2.8e-102 375.6 227 84.1
MBI13_g02397_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 8.2e-102 374.0 230 85.2
THA.LOC104810964 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 1.1e-101 373.6 214 91.1
AUR62001614 Chenopodium quinoa HOM05D005119 ORTHO05D006338 4.1e-101 371.7 229 84.7
SEGI_02516 Sequoiadendron giganteum HOM05D005119 ORTHO05D006338 2.0e-100 369.4 217 87.1
Lsat_1_v5_gn_3_116100 Lactuca sativa HOM05D005119 ORTHO05D006338 3.4e-100 368.6 204 93.6
Oeu022226.2 Olea europaea HOM05D005119 ORTHO05D006338 3.4e-100 368.6 299 70.2
Os01g0277700 Oryza sativa ssp. japonica HOM05D005119 ORTHO05D006338 3.4e-100 368.6 227 83.7
ATR0307G125 Amborella trichopoda HOM05D005119 ORTHO05D006338 1.0e-99 367.1 227 85.0
Zm00001eb128960 Zea mays HOM05D005119 ORTHO05D006338 3.6e-97 358.6 224 82.1
HPP92_006662 Vanilla planifolia HOM05D005119 ORTHO05D006338 3.9e-96 355.1 230 82.2
Sabra09G0124300 Salix brachista HOM05D005119 ORTHO05D006338 7.7e-92 340.9 233 80.3
Ah.08g222830 Amaranthus hybridus HOM05D005119 ORTHO05D006338 1.9e-90 336.3 192 91.1
SMO347G0469 Selaginella moellendorffii HOM05D005119 ORTHO05D006338 3.7e-86 322.0 207 79.2
CDE07G1923 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 4.8e-86 321.6 216 76.9
Mapoly0024s0118 Marchantia polymorpha HOM05D005119 ORTHO05D006338 9.1e-85 317.4 222 74.8
Solyc11g071510.3 Solanum lycopersicum HOM05D005119 ORTHO05D006338 2.6e-84 315.8 193 88.1
Lj2C929T5 Lonicera japonica HOM05D005119 ORTHO05D006338 6.5e-83 311.2 180 91.7
Haze_23668 Corylus avellana HOM05D005119 ORTHO05D006338 2.6e-79 299.3 194 84.5
Pp3c19_11640 Physcomitrium patens HOM05D005119 ORTHO05D006338 2.6e-79 299.3 220 71.8
Gohir.A08G000076 Gossypium hirsutum HOM05D005119 ORTHO05D006338 1.5e-74 283.5 161 91.9
Nn7g37297 Nelumbo nucifera HOM05D005119 ORTHO05D006338 3.2e-74 282.3 179 82.1
TAR369G0017 Trochodendron aralioides HOM05D005119 ORTHO05D006338 7.2e-74 281.2 158 93.0
CiPaw.14G091700 Carya illinoinensis HOM05D005119 ORTHO05D006338 9.4e-74 280.8 158 93.0
FvH4_3g27140 Fragaria vesca HOM05D005119 ORTHO05D006338 1.6e-73 280.0 158 92.4
SGA_v2.0_scaffold79G25507 Striga asiatica HOM05D005119 ORTHO05D006338 2.1e-73 279.6 154 95.5
DCAR_031602 Daucus carota HOM05D005119 ORTHO05D006338 4.7e-73 278.5 192 81.2
Cpa.g.sc103.65 Carica papaya HOM05D005119 ORTHO05D006338 2.0e-71 273.1 161 88.8
AagrBONN_evm.TU.Sc2ySwM_228.3807 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.3e-70 267.7 186 76.3
CDE08G0206 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 1.1e-69 267.3 182 78.6
CDE04G1732 Ceratophyllum demersum HOM05D005119 ORTHO05D001779 3.7e-62 242.3 160 79.4
AUR62020163 Chenopodium quinoa HOM05D005119 ORTHO05D006338 5.8e-55 218.4 124 91.9
EL10Ac8g19914 Beta vulgaris HOM05D005119 ORTHO05D006338 7.8e-52 208.0 161 72.7
Gorai.006G031100 Gossypium raimondii HOM05D005119 ORTHO05D006338 3.5e-44 182.6 110 89.1
Solyc01g009145.1 Solanum lycopersicum HOM05D005119 ORTHO05D006338 7.8e-44 181.4 103 93.2
EL10Ac6g14714 Beta vulgaris HOM05D005119 ORTHO05D006338 3.3e-42 176.0 102 93.1
Gohir.D11G235450 Gossypium hirsutum HOM05D005119 ORTHO05D006338 5.4e-37 158.7 158 58.2
Gorai.004G093900 Gossypium raimondii HOM05D005119 ORTHO05D006338 7.3e-34 148.3 88 89.8
AagrBONN_evm.TU.Sc2ySwM_368.775 Anthoceros agrestis HOM05D005119 ORTHO05D006338 4.2e-29 132.5 79 82.3
PRCOL_00002764 Prasinoderma coloniale HOM05D005119 ORTHO05D006338 1.3e-25 120.9 206 38.8
Actinidia37188 Actinidia chinensis HOM05D005119 ORTHO05D006338 4.4e-23 112.5 57 96.5
arahy.Tifrunner.gnm1.ann1.PKBV9I Arachis hypogaea HOM05D005119 ORTHO05D006338 7.6e-23 111.7 81 72.8
RcHm_v2.0_Chr5g0049771 Rosa chinensis HOM05D005119 ORTHO05D006338 3.8e-22 109.4 65 83.1
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 3.6e-17 92.8 66 72.7
SHI25369 Sapria himalayana HOM05D005119 ORTHO05D006338 1.5e-15 87.4 65 67.7
Dinv01011 Davidia involucrata HOM05D005119 ORTHO05D006338 6.7e-11 72.0 46 78.3


User provided reference genes

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