Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022736 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 8.2e-222 773.5 406 100.0
CSS0017727 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 1.1e-141 507.3 406 73.4
Dinv33245 Davidia involucrata HOM05D005420 ORTHO05D006524 5.1e-107 392.1 224 90.6
MSTRG.24552 Avicennia marina HOM05D005420 ORTHO05D006524 5.7e-106 388.7 224 87.9
Rhsim09G0003700 Rhododendron simsii HOM05D005420 ORTHO05D006524 1.3e-105 387.5 242 84.3
Prupe.7G269700 Prunus persica HOM05D005420 ORTHO05D006524 1.4e-104 384.0 222 88.7
FvH4_1g00160 Fragaria vesca HOM05D005420 ORTHO05D006524 6.9e-104 381.7 233 83.7
FAN28G0609 Fragaria x ananassa HOM05D005420 ORTHO05D006524 6.9e-104 381.7 233 83.7
MBI07_g10354_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 6.9e-104 381.7 231 81.4
vmacro00721 Vaccinium macrocarpon HOM05D005420 ORTHO05D006524 9.1e-104 381.3 229 86.9
RcHm_v2.0_Chr2g0084451 Rosa chinensis HOM05D005420 ORTHO05D006524 1.5e-103 380.6 237 82.3
MD00G1087500 Malus domestica HOM05D005420 ORTHO05D006524 2.0e-103 380.2 219 88.6
Cc03_g15990 Coffea canephora HOM05D005420 ORTHO05D006524 2.6e-103 379.8 223 86.1
TAR636G0539 Trochodendron aralioides HOM05D005420 ORTHO05D006524 5.9e-103 378.6 220 86.8
FAN26G3138 Fragaria x ananassa HOM05D005420 ORTHO05D006524 7.7e-103 378.3 233 82.8
Ciclev10012405m.g Citrus clementina HOM05D005420 ORTHO05D006524 1.0e-102 377.9 222 85.6
MD15G1143300 Malus domestica HOM05D005420 ORTHO05D006524 1.3e-102 377.5 224 87.5
Actinidia34566 Actinidia chinensis HOM05D005420 ORTHO05D006524 1.7e-102 377.1 222 85.6
TAR365G1242 Trochodendron aralioides HOM05D005420 ORTHO05D006524 8.5e-102 374.8 219 86.3
Peaxi162Scf01205g00032 Petunia axillaris HOM05D005420 ORTHO05D006524 1.1e-101 374.4 220 86.4
FAN23G1410 Fragaria x ananassa HOM05D005420 ORTHO05D006524 1.9e-101 373.6 233 82.8
Atru.chr12.1712 Acer truncatum HOM05D005420 ORTHO05D006524 2.5e-101 373.2 219 86.3
Nitab4.5_0008205g0010 Nicotiana tabacum HOM05D005420 ORTHO05D006524 4.2e-101 372.5 219 86.3
Glyma.07G273700 Glycine max HOM05D005420 ORTHO05D006524 7.2e-101 371.7 219 86.8
VMungo1215G3385 Vigna mungo HOM05D005420 ORTHO05D006524 7.2e-101 371.7 219 86.3
CiPaw.02G124600 Carya illinoinensis HOM05D005420 ORTHO05D006524 9.4e-101 371.3 219 85.4
Manes.12G003300 Manihot esculenta HOM05D005420 ORTHO05D006524 9.4e-101 371.3 224 84.4
QL10p064332 Quercus lobata HOM05D005420 ORTHO05D006524 9.4e-101 371.3 218 84.9
Cfa008513 Carpinus fangiana HOM05D005420 ORTHO05D006524 1.6e-100 370.5 213 87.8
Thecc.05G186000 Theobroma cacao HOM05D005420 ORTHO05D006524 2.7e-100 369.8 222 85.1
arahy.Tifrunner.gnm1.ann1.D6NWCJ Arachis hypogaea HOM05D005420 ORTHO05D006524 3.6e-100 369.4 219 87.2
arahy.Tifrunner.gnm1.ann1.EMGW5K Arachis hypogaea HOM05D005420 ORTHO05D006524 3.6e-100 369.4 219 87.2
CiPaw.01G201600 Carya illinoinensis HOM05D005420 ORTHO05D006524 3.6e-100 369.4 213 87.8
GSVIVG01038249001 Vitis vinifera HOM05D005420 ORTHO05D006524 3.6e-100 369.4 213 88.7
Eucgr.H01455 Eucalyptus grandis HOM05D005420 ORTHO05D006524 6.1e-100 368.6 219 84.5
Glyma.17G000800 Glycine max HOM05D005420 ORTHO05D006524 6.1e-100 368.6 219 85.8
Actinidia18399 Actinidia chinensis HOM05D005420 ORTHO05D006524 7.9e-100 368.2 229 82.1
Potri.013G084300 Populus trichocarpa HOM05D005420 ORTHO05D006524 7.9e-100 368.2 222 83.3
Nitab4.5_0000013g0040 Nicotiana tabacum HOM05D005420 ORTHO05D006524 2.3e-99 366.7 204 90.2
Phvul.003G074600 Phaseolus vulgaris HOM05D005420 ORTHO05D006524 2.3e-99 366.7 219 85.4
Solyc08g015620.3 Solanum lycopersicum HOM05D005420 ORTHO05D006524 5.1e-99 365.5 219 84.5
Sopen08g005610 Solanum pennellii HOM05D005420 ORTHO05D006524 5.1e-99 365.5 219 84.5
Duzib177G0155 Durio zibethinus HOM05D005420 ORTHO05D006524 6.7e-99 365.2 222 83.8
ClCG09G014850 Citrullus lanatus HOM05D005420 ORTHO05D006524 1.5e-98 364.0 226 82.7
CANSAT56G1087 Cannabis sativa HOM05D005420 ORTHO05D006524 2.0e-98 363.6 221 86.0
PSO675G2924 Papaver somniferum HOM05D005420 ORTHO05D006524 2.0e-98 363.6 220 81.4
PSO732G0217 Papaver somniferum HOM05D005420 ORTHO05D006524 2.0e-98 363.6 220 81.4
DCAR_005460 Daucus carota HOM05D005420 ORTHO05D006524 2.6e-98 363.2 205 91.2
TWI36G0345 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 3.3e-98 362.8 213 85.4
Sabra13G0078900 Salix brachista HOM05D005420 ORTHO05D006524 4.4e-98 362.5 222 82.4
SalBow3G4646 Salvia bowleyana HOM05D005420 ORTHO05D006524 4.4e-98 362.5 224 83.0
CsaV3_7G022350 Cucumis sativus L. HOM05D005420 ORTHO05D006524 5.7e-98 362.1 238 78.2
ECA248G1232 Erigeron canadensis HOM05D005420 ORTHO05D006524 9.7e-98 361.3 219 85.4
Lj6C285T2 Lonicera japonica HOM05D005420 ORTHO05D006524 9.7e-98 361.3 197 94.4
CDE09G0694 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 1.3e-97 360.9 215 82.8
Sed0010932 Sechium edule HOM05D005420 ORTHO05D006524 2.2e-97 360.1 226 79.6
Lj4g0016379 Lotus japonicus HOM05D005420 ORTHO05D006524 4.8e-97 359.0 219 84.5
PGR119G0486 Punica granatum HOM05D005420 ORTHO05D006524 8.2e-97 358.2 197 91.9
GSVIVG01026140001 Vitis vinifera HOM05D005420 ORTHO05D006524 1.1e-96 357.8 213 84.5
EL10Ac3g06165 Beta vulgaris HOM05D005420 ORTHO05D006524 1.4e-96 357.5 209 86.6
Gohir.A02G106300 Gossypium hirsutum HOM05D005420 ORTHO05D006524 1.8e-96 357.1 222 82.0
SGA_v2.0_scaffold12G06218 Striga asiatica HOM05D005420 ORTHO05D006524 1.8e-96 357.1 276 71.4
Lsat_1_v5_gn_1_76981 Lactuca sativa HOM05D005420 ORTHO05D006524 2.4e-96 356.7 211 86.3
Aqoxy1G01859 Aquilegia oxysepala HOM05D005420 ORTHO05D006524 4.1e-96 355.9 202 90.1
Gohir.D03G071700 Gossypium hirsutum HOM05D005420 ORTHO05D006524 4.1e-96 355.9 222 82.0
Gorai.003G088300 Gossypium raimondii HOM05D005420 ORTHO05D006524 4.1e-96 355.9 222 82.0
HanXRQChr11g0343501 Helianthus annuus HOM05D005420 ORTHO05D006524 5.3e-96 355.5 219 84.9
unitig_27.g25143 Utricularia gibba HOM05D005420 ORTHO05D006524 7.0e-96 355.1 215 83.7
Cpa.g.sc151.6 Carica papaya HOM05D005420 ORTHO05D006524 1.2e-95 354.4 204 88.2
Migut.G00921 Erythranthe guttata HOM05D005420 ORTHO05D006524 1.2e-95 354.4 213 85.4
HanXRQChr01g0023651 Helianthus annuus HOM05D005420 ORTHO05D006524 2.6e-95 353.2 220 84.5
ATR0743G098 Amborella trichopoda HOM05D005420 ORTHO05D006524 1.3e-94 350.9 220 80.9
AUR62023710 Chenopodium quinoa HOM05D005420 ORTHO05D006524 1.7e-94 350.5 213 83.1
Ah.07g203200 Amaranthus hybridus HOM05D005420 ORTHO05D006524 2.9e-94 349.7 210 83.8
unitig_699.g19464 Utricularia gibba HOM05D005420 ORTHO05D006524 6.5e-94 348.6 193 90.2
AUR62002482 Chenopodium quinoa HOM05D005420 ORTHO05D006524 1.1e-93 347.8 213 82.6
Duzib128G1088 Durio zibethinus HOM05D005420 ORTHO05D006524 2.5e-93 346.7 195 89.7
A03p24600 Brassica napus HOM05D005420 ORTHO05D006524 9.4e-93 344.7 204 85.3
C03p29330 Brassica napus HOM05D005420 ORTHO05D006524 2.1e-92 343.6 204 85.3
BolC3t15280H Brassica oleracea HOM05D005420 ORTHO05D006524 2.1e-92 343.6 204 85.3
TWI36G1305 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 2.1e-92 343.6 216 81.0
C04p04880 Brassica napus HOM05D005420 ORTHO05D006524 2.7e-92 343.2 216 81.5
BraA05t19397Z Brassica rapa HOM05D005420 ORTHO05D006524 3.6e-92 342.8 216 81.0
THA.LOC104802345 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 3.6e-92 342.8 192 90.1
BolC4t22118H Brassica oleracea HOM05D005420 ORTHO05D006524 4.7e-92 342.4 216 81.5
BcaB06g29350 Brassica carinata HOM05D005420 ORTHO05D006524 1.0e-91 341.3 214 81.8
BcaC02g12350 Brassica carinata HOM05D005420 ORTHO05D006524 1.4e-91 340.9 216 81.5
Thhalv10001571m.g Eutrema salsugineum HOM05D005420 ORTHO05D006524 1.4e-91 340.9 213 82.6
HPP92_024700 Vanilla planifolia HOM05D005420 ORTHO05D006524 1.4e-91 340.9 195 85.1
BraA03t11665Z Brassica rapa HOM05D005420 ORTHO05D006524 1.8e-91 340.5 204 84.3
Carub.0004s2651 Capsella rubella HOM05D005420 ORTHO05D006524 2.3e-91 340.1 213 82.2
Carub.0005s2660 Capsella rubella HOM05D005420 ORTHO05D006524 2.3e-91 340.1 206 83.0
THA.LOC104804283 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 2.3e-91 340.1 205 85.4
AL4G42820 Arabidopsis lyrata HOM05D005420 ORTHO05D006524 3.0e-91 339.7 220 79.1
A05p04100 Brassica napus HOM05D005420 ORTHO05D006524 3.0e-91 339.7 217 81.1
Aa31LG1G25640 Aethionema arabicum HOM05D005420 ORTHO05D006524 3.9e-91 339.3 214 80.8
CARHR139120 Cardamine hirsuta HOM05D005420 ORTHO05D006524 5.2e-91 339.0 213 82.6
AT2G43945 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 6.7e-91 338.6 192 88.5
AT3G59870 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 2.0e-90 337.0 216 80.1
Psat4g001320 Pisum sativum HOM05D005420 ORTHO05D006524 3.3e-90 336.3 220 79.5
Aa31LG10G14100 Aethionema arabicum HOM05D005420 ORTHO05D006524 7.4e-90 335.1 214 80.8
Os01g0338600 Oryza sativa ssp. japonica HOM05D005420 ORTHO05D006524 9.7e-90 334.7 219 78.5
BcaB02g08884 Brassica carinata HOM05D005420 ORTHO05D006524 1.3e-89 334.3 185 89.7
Zm00001eb159810 Zea mays HOM05D005420 ORTHO05D006524 9.1e-88 328.2 213 80.3
Sp4g26040 Schrenkiella parvula HOM05D005420 ORTHO05D006524 3.8e-86 322.8 201 82.6
Dinv24753 Davidia involucrata HOM05D005420 ORTHO05D006524 1.2e-84 317.8 361 56.8
SMO367G0538 Selaginella moellendorffii HOM05D005420 ORTHO05D006524 1.6e-84 317.4 185 84.9
Mapoly0136s0029 Marchantia polymorpha HOM05D005420 ORTHO05D006524 6.1e-84 315.5 185 85.4
Pp3c8_21410 Physcomitrium patens HOM05D005420 ORTHO05D006524 6.1e-84 315.5 184 83.7
SEGI_26827 Sequoiadendron giganteum HOM05D005420 ORTHO05D006524 8.0e-84 315.1 205 78.5
Pp3c24_16460 Physcomitrium patens HOM05D005420 ORTHO05D006524 3.0e-83 313.2 211 76.3
Haze_11131 Corylus avellana HOM05D005420 ORTHO05D006524 5.7e-82 308.9 338 54.4
TPR.G6015 Trifolium pratense HOM05D005420 ORTHO05D006524 4.5e-79 299.3 203 79.8
Migut.N03031 Erythranthe guttata HOM05D005420 ORTHO05D006524 1.3e-78 297.7 207 78.3
Nn7g37463 Nelumbo nucifera HOM05D005420 ORTHO05D006524 1.3e-78 297.7 179 84.9
Manes.13G003200 Manihot esculenta HOM05D005420 ORTHO05D006524 1.6e-76 290.8 157 93.6
Sc25g0003040 Simmondsia chinensis HOM05D005420 ORTHO05D006524 2.8e-73 280.0 174 81.6
Nn3g18334 Nelumbo nucifera HOM05D005420 ORTHO05D006524 4.8e-73 279.3 166 85.5
Hund22588 Selenicereus undatus HOM05D005420 ORTHO05D006524 6.6e-70 268.9 168 81.5
Medtr4g134910 Medicago truncatula HOM05D005420 ORTHO05D006524 5.2e-67 259.2 151 88.1
Lalb_Chr18g0044961 Lupinus albus HOM05D005420 ORTHO05D006524 1.3e-65 254.6 134 95.5
MCO05G102 Micromonas commoda HOM05D005420 ORTHO05D006524 8.3e-65 251.9 160 76.9
Cre16.g676450 Chlamydomonas reinhardtii HOM05D005420 ORTHO05D006524 2.3e-62 243.8 192 66.1
Oeu022910.1 Olea europaea HOM05D005420 ORTHO05D006524 1.9e-61 240.7 133 92.5
Zm00001eb356860 Zea mays HOM05D005420 ORTHO05D006524 2.8e-60 236.9 213 62.4
PRCOL_00006877 Prasinoderma coloniale HOM05D005420 ORTHO05D006524 3.1e-59 233.4 160 70.6
Atru.chr12.1711 Acer truncatum HOM05D005420 ORTHO05D006524 5.2e-59 232.6 191 68.6
Ca_13540_v3 Cicer arietinum L. HOM05D005420 ORTHO05D006524 1.3e-57 228.0 209 63.6
AagrBONN_evm.TU.Sc2ySwM_228.1821 Anthoceros agrestis HOM05D005420 ORTHO05D006524 3.0e-46 190.3 120 79.2
Sed0016168 Sechium edule HOM05D005420 ORTHO05D006524 5.4e-40 169.5 90 96.7
CDE02G3676 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 4.6e-39 166.4 176 54.5
MBI07_g42072_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 7.8e-39 165.6 89 93.3
Pp3c20_1670 Physcomitrium patens HOM05D005420 ORTHO05D006524 8.9e-35 152.1 189 47.6
Eucgr.L00810 Eucalyptus grandis HOM05D005420 ORTHO05D006524 7.6e-34 149.1 103 71.8
Eucgr.H01440 Eucalyptus grandis HOM05D005420 ORTHO05D006524 9.2e-32 142.1 104 67.3
Lsat_1_v5_gn_1_75001 Lactuca sativa HOM05D005420 ORTHO05D006524 1.4e-24 118.2 78 74.4
MSTRG.9265 Avicennia marina HOM05D005420 ORTHO05D006524 1.6e-23 114.8 82 73.2
Lsat_1_v5_gn_5_160100 Lactuca sativa HOM05D005420 ORTHO05D006524 6.0e-23 112.8 78 70.5
CBR_g10867 Chara braunii HOM05D005420 ORTHO05D006524 3.8e-17 93.6 178 37.1
Lalb_Chr18g0044971 Lupinus albus HOM05D005420 ORTHO05D006524 1.0e-09 68.9 74 52.7
Sed0003231 Sechium edule HOM05D005420 ORTHO05D006524 2.2e-09 67.8 72 47.2


User provided reference genes

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