Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022713 Camellia sinensis var. sinensis HOM05D003190 ORTHO05D018834 4.4e-46 187.6 93 100.0
CSS0013935 Camellia sinensis var. sinensis HOM05D003190 ORTHO05D018834 4.1e-44 181.0 93 96.8
CSS0021368 Camellia sinensis var. sinensis HOM05D003190 ORTHO05D018834 4.1e-44 181.0 93 96.8
CSS0003860 Camellia sinensis var. sinensis HOM05D003190 ORTHO05D018834 1.1e-41 172.9 93 94.6
CSS0042216 Camellia sinensis var. sinensis HOM05D003190 ORTHO05D018834 2.0e-22 109.0 93 64.5
CSS0034884 Camellia sinensis var. sinensis HOM05D003190 ORTHO05D018834 3.2e-20 101.7 98 61.2
CSS0020681 Camellia sinensis var. sinensis HOM05D003190 ORTHO05D003745 5.6e-17 90.9 67 74.6
CAN.G1473.15 Capsicum annuum HOM05D003190 ORTHO05D003745 1.2e-16 89.7 77 64.9
vmacro13493 Vaccinium macrocarpon HOM05D003190 ORTHO05D003745 1.6e-16 89.4 67 73.1
Thecc.01G394400 Theobroma cacao HOM05D003190 ORTHO05D003745 2.8e-16 88.6 67 73.1
Rhsim07G0035600 Rhododendron simsii HOM05D003190 ORTHO05D003745 4.7e-16 87.8 77 63.6
FvH4_7g10110 Fragaria vesca HOM05D003190 ORTHO05D003745 8.1e-16 87.0 89 56.2
RcHm_v2.0_Chr1g0347681 Rosa chinensis HOM05D003190 ORTHO05D003745 8.1e-16 87.0 89 56.2
Actinidia02786 Actinidia chinensis HOM05D003190 ORTHO05D003745 1.8e-15 85.9 67 71.6
Actinidia12147 Actinidia chinensis HOM05D003190 ORTHO05D003745 1.8e-15 85.9 67 71.6
Dinv43620 Davidia involucrata HOM05D003190 ORTHO05D003745 1.8e-15 85.9 67 71.6
GSVIVG01018273001 Vitis vinifera HOM05D003190 ORTHO05D003745 1.8e-15 85.9 67 71.6
Ciclev10021825m.g Citrus clementina HOM05D003190 ORTHO05D003745 3.1e-15 85.1 67 70.1
Nitab4.5_0004620g0020 Nicotiana tabacum HOM05D003190 ORTHO05D003745 3.1e-15 85.1 62 77.4
Duzib133G1461 Durio zibethinus HOM05D003190 ORTHO05D003745 4.0e-15 84.7 67 70.1
Nitab4.5_0012667g0010 Nicotiana tabacum HOM05D003190 ORTHO05D003745 4.0e-15 84.7 67 71.6
Peaxi162Scf00475g00516 Petunia axillaris HOM05D003190 ORTHO05D003745 4.0e-15 84.7 67 71.6
Potri.014G047200 Populus trichocarpa HOM05D003190 ORTHO05D003745 4.0e-15 84.7 67 70.1
Actinidia12646 Actinidia chinensis HOM05D003190 ORTHO05D003745 5.2e-15 84.3 67 71.6
TPR.G14100 Trifolium pratense HOM05D003190 ORTHO05D003745 5.2e-15 84.3 77 63.6
Migut.B01538 Erythranthe guttata HOM05D003190 ORTHO05D003745 6.8e-15 84.0 67 68.7
Hma1.2p1_0674F.1_g201530 Hydrangea macrophylla HOM05D003190 ORTHO05D003745 6.8e-15 84.0 66 71.2
Manes.05G054500 Manihot esculenta HOM05D003190 ORTHO05D003745 6.8e-15 84.0 67 67.2
QL04p030379 Quercus lobata HOM05D003190 ORTHO05D003745 1.2e-14 83.2 67 68.7
Potri.002G137400 Populus trichocarpa HOM05D003190 ORTHO05D003745 1.5e-14 82.8 67 68.7
Sabra14G0034200 Salix brachista HOM05D003190 ORTHO05D003745 1.5e-14 82.8 67 68.7
Aa31LG1G11460 Aethionema arabicum HOM05D003190 ORTHO05D003745 2.0e-14 82.4 70 62.9
Lj9A558T43 Lonicera japonica HOM05D003190 ORTHO05D003745 2.0e-14 82.4 66 68.2
Medtr7g081735 Medicago truncatula HOM05D003190 ORTHO05D003745 2.0e-14 82.4 67 70.1
SGA_v2.0_scaffold52G19224 Striga asiatica HOM05D003190 ORTHO05D003745 2.0e-14 82.4 77 62.3
Atru.chr5.131 Acer truncatum HOM05D003190 ORTHO05D003745 2.6e-14 82.0 67 68.7
Cfa011075 Carpinus fangiana HOM05D003190 ORTHO05D003745 2.6e-14 82.0 67 68.7
Haze_02841 Corylus avellana HOM05D003190 ORTHO05D003745 2.6e-14 82.0 67 68.7
Glyma.13G187200 Glycine max HOM05D003190 ORTHO05D003745 2.6e-14 82.0 67 68.7
Gohir.D11G080200 Gossypium hirsutum HOM05D003190 ORTHO05D003745 2.6e-14 82.0 67 68.7
Gorai.007G085900 Gossypium raimondii HOM05D003190 ORTHO05D003745 2.6e-14 82.0 67 68.7
Oeu000052.1 Olea europaea HOM05D003190 ORTHO05D003745 2.6e-14 82.0 89 55.1
Aqoxy3G02735 Aquilegia oxysepala HOM05D003190 ORTHO05D003745 3.4e-14 81.6 67 67.2
MSTRG.20693 Avicennia marina HOM05D003190 ORTHO05D003745 3.4e-14 81.6 77 61.0
CSS0044756 Camellia sinensis var. sinensis HOM05D003190 ORTHO05D003745 3.4e-14 81.6 67 68.7
Dinv44067 Davidia involucrata HOM05D003190 ORTHO05D003745 3.4e-14 81.6 67 67.2
Eucgr.D01237 Eucalyptus grandis HOM05D003190 ORTHO05D003745 3.4e-14 81.6 67 67.2
Eucgr.L01589 Eucalyptus grandis HOM05D003190 ORTHO05D003745 3.4e-14 81.6 67 67.2
FAN10G1008 Fragaria x ananassa HOM05D003190 ORTHO05D003745 3.4e-14 81.6 80 55.0
Gohir.D08G040200 Gossypium hirsutum HOM05D003190 ORTHO05D003745 3.4e-14 81.6 67 68.7
Prupe.2G129800 Prunus persica HOM05D003190 ORTHO05D003745 3.4e-14 81.6 89 53.9
CANSAT21G0456 Cannabis sativa HOM05D003190 ORTHO05D003745 4.4e-14 81.3 67 68.7
CANSAT21G1264 Cannabis sativa HOM05D003190 ORTHO05D003745 4.4e-14 81.3 67 68.7
Cpa.g.sc101.14 Carica papaya HOM05D003190 ORTHO05D003745 4.4e-14 81.3 67 67.2
CiPaw.13G026700 Carya illinoinensis HOM05D003190 ORTHO05D003745 4.4e-14 81.3 67 67.2
Duzib138G0899 Durio zibethinus HOM05D003190 ORTHO05D003745 4.4e-14 81.3 67 70.1
Lj1g0027839 Lotus japonicus HOM05D003190 ORTHO05D003745 4.4e-14 81.3 67 67.2
VMungo1127G1897 Vigna mungo HOM05D003190 ORTHO05D003745 4.4e-14 81.3 67 67.2
Manes.01G272900 Manihot esculenta HOM05D003190 ORTHO05D003745 5.8e-14 80.9 67 67.2
Psat3g098680 Pisum sativum HOM05D003190 ORTHO05D003745 5.8e-14 80.9 67 68.7
THA.LOC104801488 Tarenaya hassleriana HOM05D003190 ORTHO05D003745 5.8e-14 80.9 67 67.2
THA.LOC104814067 Tarenaya hassleriana HOM05D003190 ORTHO05D003745 5.8e-14 80.9 63 69.8
Gohir.A12G096900 Gossypium hirsutum HOM05D003190 ORTHO05D003745 7.6e-14 80.5 67 65.7
Gohir.D12G099800 Gossypium hirsutum HOM05D003190 ORTHO05D003745 7.6e-14 80.5 67 65.7
Gorai.008G108700 Gossypium raimondii HOM05D003190 ORTHO05D003745 7.6e-14 80.5 67 65.7
Ca_08071_v3 Cicer arietinum L. HOM05D003190 ORTHO05D003745 9.9e-14 80.1 67 68.7
Gohir.A08G029500 Gossypium hirsutum HOM05D003190 ORTHO05D003745 9.9e-14 80.1 67 67.2
Phvul.011G190600 Phaseolus vulgaris HOM05D003190 ORTHO05D003745 9.9e-14 80.1 67 67.2
TWI14G0166 Tripterygium wilfordii HOM05D003190 ORTHO05D003745 9.9e-14 80.1 77 59.7
TWI23G0403 Tripterygium wilfordii HOM05D003190 ORTHO05D003745 9.9e-14 80.1 68 66.2
vmacro21057 Vaccinium macrocarpon HOM05D003190 ORTHO05D003745 9.9e-14 80.1 67 67.2
Ciclev10021722m.g Citrus clementina HOM05D003190 ORTHO05D003745 1.3e-13 79.7 90 52.2
Migut.N01739 Erythranthe guttata HOM05D003190 ORTHO05D003745 1.3e-13 79.7 62 71.0
FAN01G1555 Fragaria x ananassa HOM05D003190 ORTHO05D003745 1.3e-13 79.7 80 53.8
MD02G1211700 Malus domestica HOM05D003190 ORTHO05D003745 1.3e-13 79.7 89 53.9
Sc02g0003110 Simmondsia chinensis HOM05D003190 ORTHO05D003745 1.3e-13 79.7 67 68.7
arahy.Tifrunner.gnm1.ann1.9AB492 Arachis hypogaea HOM05D003190 ORTHO05D003745 1.7e-13 79.3 67 67.2
arahy.Tifrunner.gnm1.ann1.WK7TVH Arachis hypogaea HOM05D003190 ORTHO05D003745 1.7e-13 79.3 67 67.2
C08p54150 Brassica napus HOM05D003190 ORTHO05D003745 1.7e-13 79.3 66 65.2
SalBow5G0141 Salvia bowleyana HOM05D003190 ORTHO05D003745 1.7e-13 79.3 62 71.0
CiPaw.14G020800 Carya illinoinensis HOM05D003190 ORTHO05D003745 2.2e-13 79.0 63 69.8
Glyma.15G224900 Glycine max HOM05D003190 ORTHO05D003745 2.2e-13 79.0 67 67.2
MD07G1107100 Malus domestica HOM05D003190 ORTHO05D003745 2.2e-13 79.0 89 51.7
Hund17090 Selenicereus undatus HOM05D003190 ORTHO05D003745 2.2e-13 79.0 62 69.4
BcaC07g42340 Brassica carinata HOM05D003190 ORTHO05D003745 2.9e-13 78.6 67 65.7
Carub.0001s0013 Capsella rubella HOM05D003190 ORTHO05D003745 2.9e-13 78.6 67 65.7
AUR62013747 Chenopodium quinoa HOM05D003190 ORTHO05D003745 2.9e-13 78.6 78 57.7
DCAR_029466 Daucus carota HOM05D003190 ORTHO05D003745 2.9e-13 78.6 67 65.7
Thhalv10026057m.g Eutrema salsugineum HOM05D003190 ORTHO05D003745 2.9e-13 78.6 67 65.7
Gohir.A11G075600 Gossypium hirsutum HOM05D003190 ORTHO05D003745 2.9e-13 78.6 67 65.7
Nn1g00857 Nelumbo nucifera HOM05D003190 ORTHO05D003745 2.9e-13 78.6 67 65.7
PGR042G3195 Punica granatum HOM05D003190 ORTHO05D003745 2.9e-13 78.6 67 67.2
SGA_v2.0_scaffold153G36905 Striga asiatica HOM05D003190 ORTHO05D003745 2.9e-13 78.6 77 57.1
MSTRG.17130 Avicennia marina HOM05D003190 ORTHO05D003745 3.8e-13 78.2 67 65.7
Gorai.004G039100 Gossypium raimondii HOM05D003190 ORTHO05D003745 3.8e-13 78.2 67 67.2
QL02p060801 Quercus lobata HOM05D003190 ORTHO05D003745 3.8e-13 78.2 74 59.5
QL12p009727 Quercus lobata HOM05D003190 ORTHO05D003745 3.8e-13 78.2 74 60.8
Ah.05g177860 Amaranthus hybridus HOM05D003190 ORTHO05D003745 4.9e-13 77.8 72 61.1
Cc02_g25080 Coffea canephora HOM05D003190 ORTHO05D003745 4.9e-13 77.8 67 65.7
Thhalv10008523m.g Eutrema salsugineum HOM05D003190 ORTHO05D003745 4.9e-13 77.8 67 64.2
FAN06G0700 Fragaria x ananassa HOM05D003190 ORTHO05D003745 4.9e-13 77.8 80 53.8
Sp1g00180 Schrenkiella parvula HOM05D003190 ORTHO05D003745 4.9e-13 77.8 67 64.2
AL1G10140 Arabidopsis lyrata HOM05D003190 ORTHO05D003745 6.4e-13 77.4 67 64.2
BcaC06g34922 Brassica carinata HOM05D003190 ORTHO05D003745 6.4e-13 77.4 67 64.2
BcaC07g42436 Brassica carinata HOM05D003190 ORTHO05D003745 6.4e-13 77.4 67 64.2
A07p14830 Brassica napus HOM05D003190 ORTHO05D003745 6.4e-13 77.4 67 64.2
A09p69340 Brassica napus HOM05D003190 ORTHO05D003745 6.4e-13 77.4 67 64.2
BolC7t42709H Brassica oleracea HOM05D003190 ORTHO05D003745 6.4e-13 77.4 68 63.2
BolC8t52924H Brassica oleracea HOM05D003190 ORTHO05D003745 6.4e-13 77.4 67 64.2
BraA07t29224Z Brassica rapa HOM05D003190 ORTHO05D003745 6.4e-13 77.4 67 64.2
CARHR000240 Cardamine hirsuta HOM05D003190 ORTHO05D003745 6.4e-13 77.4 67 64.2
MELO3C022274.2 Cucumis melo HOM05D003190 ORTHO05D003745 6.4e-13 77.4 67 65.7
CsaV3_6G008580 Cucumis sativus L. HOM05D003190 ORTHO05D003745 6.4e-13 77.4 67 65.7
PGSC0003DMG400026050 Solanum tuberosum HOM05D003190 ORTHO05D003745 6.4e-13 77.4 67 67.2
ClCG06G002540 Citrullus lanatus HOM05D003190 ORTHO05D003745 8.4e-13 77.0 67 65.7
ECA234G0556 Erigeron canadensis HOM05D003190 ORTHO05D003745 8.4e-13 77.0 67 64.2
Lalb_Chr19g0126531 Lupinus albus HOM05D003190 ORTHO05D003745 8.4e-13 77.0 67 62.7
Oeu020085.3 Olea europaea HOM05D003190 ORTHO05D003745 8.4e-13 77.0 67 65.7
Sed0021185 Sechium edule HOM05D003190 ORTHO05D003745 8.4e-13 77.0 67 65.7
HanXRQChr13g0414471 Helianthus annuus HOM05D003190 ORTHO05D003745 1.1e-12 76.6 67 65.7
CARHR248010 Cardamine hirsuta HOM05D003190 ORTHO05D003745 1.4e-12 76.3 67 62.7
HanXRQChr02g0046721 Helianthus annuus HOM05D003190 ORTHO05D003745 1.4e-12 76.3 65 63.1
Lj7C545T16 Lonicera japonica HOM05D003190 ORTHO05D003745 1.4e-12 76.3 67 64.2
Nn6g33831 Nelumbo nucifera HOM05D003190 ORTHO05D003745 1.4e-12 76.3 67 64.2
SGA_v2.0_scaffold43G16535 Striga asiatica HOM05D003190 ORTHO05D003745 1.4e-12 76.3 62 67.7
TWI59G1064 Tripterygium wilfordii HOM05D003190 ORTHO05D003745 1.4e-12 76.3 67 65.7
TAR375G0928 Trochodendron aralioides HOM05D003190 ORTHO05D003745 1.4e-12 76.3 67 64.2
BcaB03g14242 Brassica carinata HOM05D003190 ORTHO05D003745 1.9e-12 75.9 67 62.7
C07p21780 Brassica napus HOM05D003190 ORTHO05D003745 1.9e-12 75.9 68 61.8
FAN04G2686 Fragaria x ananassa HOM05D003190 ORTHO05D003745 1.9e-12 75.9 77 53.2
Sopen01g036080 Solanum pennellii HOM05D003190 ORTHO05D003745 1.9e-12 75.9 67 65.7
EL10Ac1g00758 Beta vulgaris HOM05D003190 ORTHO05D003745 2.4e-12 75.5 67 65.7
FAN03G0648 Fragaria x ananassa HOM05D003190 ORTHO05D003745 2.4e-12 75.5 53 73.6
Lsat_1_v5_gn_4_39820 Lactuca sativa HOM05D003190 ORTHO05D003745 2.4e-12 75.5 67 62.7
AT1G02090 Arabidopsis thaliana HOM05D003190 ORTHO05D003745 3.2e-12 75.1 67 64.2
FvH4_5g19860 Fragaria vesca HOM05D003190 ORTHO05D003745 3.2e-12 75.1 77 53.2
FAN08G1565 Fragaria x ananassa HOM05D003190 ORTHO05D003745 3.2e-12 75.1 77 53.2
FAN13G1610 Fragaria x ananassa HOM05D003190 ORTHO05D003745 3.2e-12 75.1 77 53.2
Phvul.008G046600 Phaseolus vulgaris HOM05D003190 ORTHO05D003745 4.2e-12 74.7 58 70.7
ECA236G0031 Erigeron canadensis HOM05D003190 ORTHO05D003745 5.4e-12 74.3 67 62.7
MBI04_g07222_MAGBIO Magnolia biondii HOM05D003190 ORTHO05D003745 5.4e-12 74.3 62 67.7
Peaxi162Scf00103g00518 Petunia axillaris HOM05D003190 ORTHO05D003745 5.4e-12 74.3 63 66.7
ATR0057G124 Amborella trichopoda HOM05D003190 ORTHO05D003745 7.1e-12 73.9 78 55.1
FAN18G2349 Fragaria x ananassa HOM05D003190 ORTHO05D003745 7.1e-12 73.9 62 64.5
Lalb_Chr03g0040361 Lupinus albus HOM05D003190 ORTHO05D003745 7.1e-12 73.9 67 61.2
Glyma.18G252100 Glycine max HOM05D003190 ORTHO05D003745 9.3e-12 73.6 67 62.7
PSO782G2887 Papaver somniferum HOM05D003190 ORTHO05D003745 1.2e-11 73.2 67 61.2
Sp6g00030 Schrenkiella parvula HOM05D003190 ORTHO05D003745 1.2e-11 73.2 60 68.3
BraA09t42279Z Brassica rapa HOM05D003190 ORTHO05D003745 1.6e-11 72.8 67 61.2
PSO063G4643 Papaver somniferum HOM05D003190 ORTHO05D003745 1.6e-11 72.8 67 61.2
Solyc01g090290.4 Solanum lycopersicum HOM05D003190 ORTHO05D003745 1.6e-11 72.8 67 64.2
TAR374G0382 Trochodendron aralioides HOM05D003190 ORTHO05D003745 1.6e-11 72.8 67 61.2
GSVIVG01004797001 Vitis vinifera HOM05D003190 ORTHO05D003745 1.6e-11 72.8 77 51.9
Carub.0006s3723 Capsella rubella HOM05D003190 ORTHO05D003745 2.1e-11 72.4 63 65.1
AUR62023404 Chenopodium quinoa HOM05D003190 ORTHO05D003745 2.1e-11 72.4 78 55.1
RcHm_v2.0_Chr7g0204651 Rosa chinensis HOM05D003190 ORTHO05D003745 2.1e-11 72.4 77 53.2
SEGI_01663 Sequoiadendron giganteum HOM05D003190 ORTHO05D003745 2.7e-11 72.0 67 62.7
Zm00001eb321750 Zea mays HOM05D003190 ORTHO05D003745 2.7e-11 72.0 67 61.2
Zm00001eb105310 Zea mays HOM05D003190 ORTHO05D003745 4.6e-11 71.2 67 61.2
Sabra03G0051000 Salix brachista HOM05D003190 ORTHO05D018834 6.0e-11 70.9 60 65.0
SMO239G0056 Selaginella moellendorffii HOM05D003190 ORTHO05D003745 6.0e-11 70.9 67 59.7
Prupe.5G061700 Prunus persica HOM05D003190 ORTHO05D003745 7.8e-11 70.5 77 51.9
Oeu063237.1 Olea europaea HOM05D003190 ORTHO05D003745 1.0e-10 70.1 62 62.9
MD04G1057800 Malus domestica HOM05D003190 ORTHO05D003745 1.3e-10 69.7 77 50.6
Hund27406 Selenicereus undatus HOM05D003190 ORTHO05D003745 1.3e-10 69.7 67 59.7
CDE12G0792 Ceratophyllum demersum HOM05D003190 ORTHO05D003745 1.7e-10 69.3 61 63.9
Potri.001G153900 Populus trichocarpa HOM05D003190 ORTHO05D018834 1.7e-10 69.3 60 63.3
AagrBONN_evm.TU.Sc2ySwM_228.489 Anthoceros agrestis HOM05D003190 ORTHO05D003745 3.0e-10 68.6 67 56.7
Mapoly0041s0006 Marchantia polymorpha HOM05D003190 ORTHO05D003745 5.1e-10 67.8 67 56.7
HPP92_001540 Vanilla planifolia HOM05D000263 ORTHO05D000213 5.1e-10 67.8 67 58.2
HanXRQChr06g0167931 Helianthus annuus HOM05D003190 ORTHO05D003745 1.1e-09 66.6 67 62.7
Pp3c9_18560 Physcomitrium patens HOM05D003190 ORTHO05D003745 1.9e-09 65.9 67 56.7
BcaB03g13632 Brassica carinata HOM05D003190 ORTHO05D003745 2.5e-09 65.5 81 50.6
Pp3c15_22100 Physcomitrium patens HOM05D003190 ORTHO05D003745 3.3e-09 65.1 67 55.2
CBR_g6296 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-08 63.2 67 55.2
Potri.003G081066 Populus trichocarpa HOM05D003190 ORTHO05D003745 4.8e-08 61.2 59 59.3
SHI13612 Sapria himalayana HOM05D003190 ORTHO05D003745 1.8e-07 59.3 59 55.9
BolC5t28796H Brassica oleracea HOM05D003190 ORTHO05D003745 5.3e-07 57.8 63 55.6
C05p00090 Brassica napus HOM05D003190 ORTHO05D003745 9.0e-07 57.0 58 55.2


User provided reference genes

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