Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022710 Camellia sinensis var. sinensis HOM05D001837 ORTHO05D024694 5.9e-46 187.2 95 100.0
CSS0019028 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D024694 2.4e-31 138.7 95 81.1
CSS0008442 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D024694 2.3e-26 122.1 108 66.7
CSS0022444 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D024694 2.3e-26 122.1 108 66.7
Dinv38727 Davidia involucrata HOM05D001837 ORTHO05D003156 8.3e-08 60.5 48 62.5
BcaB03g14479 Brassica carinata HOM05D001837 ORTHO05D003156 1.4e-07 59.7 47 61.7
Zm00001eb165510 Zea mays HOM05D001837 ORTHO05D003156 1.8e-07 59.3 53 60.4
Sp1g16760 Schrenkiella parvula HOM05D001837 ORTHO05D003156 2.4e-07 58.9 47 61.7
TAR622G0453 Trochodendron aralioides HOM05D001837 ORTHO05D003156 4.1e-07 58.2 54 59.3
CiPaw.06G086700 Carya illinoinensis HOM05D001837 ORTHO05D003156 5.4e-07 57.8 36 77.8
CSS0026210 Camellia sinensis var. sinensis HOM05D001837 ORTHO05D003156 7.0e-07 57.4 28 96.4
Os11g0658700 Oryza sativa ssp. japonica HOM05D001837 ORTHO05D003156 7.0e-07 57.4 28 96.4
HPP92_011255 Vanilla planifolia HOM05D001837 ORTHO05D003156 7.0e-07 57.4 28 96.4
TPR.G39192 Trifolium pratense HOM05D001837 ORTHO05D024694 9.2e-07 57.0 32 81.2
A08p30230 Brassica napus HOM05D001837 ORTHO05D003156 1.2e-06 56.6 29 89.7
AL1G31230 Arabidopsis lyrata HOM05D001837 ORTHO05D003156 1.6e-06 56.2 29 89.7
AT1G18750 Arabidopsis thaliana HOM05D001837 ORTHO05D003156 1.6e-06 56.2 29 89.7
Carub.0001s1840 Capsella rubella HOM05D001837 ORTHO05D003156 1.6e-06 56.2 29 89.7
CARHR019390 Cardamine hirsuta HOM05D001837 ORTHO05D003156 1.6e-06 56.2 29 89.7
Cfa018926 Carpinus fangiana HOM05D001837 ORTHO05D003156 1.6e-06 56.2 28 92.9
Ciclev10020575m.g Citrus clementina HOM05D001837 ORTHO05D003156 1.6e-06 56.2 28 92.9
MBI05_g10771_MAGBIO Magnolia biondii HOM05D001837 ORTHO05D003156 1.6e-06 56.2 28 92.9
Nn3g17279 Nelumbo nucifera HOM05D001837 ORTHO05D003156 1.6e-06 56.2 28 92.9
BcaB03g12962 Brassica carinata HOM05D001837 ORTHO05D003156 2.0e-06 55.8 30 83.3
Hma1.2p1_1619F.1_g293930 Hydrangea macrophylla HOM05D001837 ORTHO05D003156 2.0e-06 55.8 28 89.3
Prupe.5G195000 Prunus persica HOM05D004915 ORTHO05D006048 2.0e-06 55.8 38 63.2
PGR083G0186 Punica granatum HOM05D001837 ORTHO05D003156 2.0e-06 55.8 28 89.3
Actinidia37619 Actinidia chinensis HOM05D001837 ORTHO05D003156 2.7e-06 55.5 28 92.9
Dinv16662 Davidia involucrata HOM05D001837 ORTHO05D003156 2.7e-06 55.5 28 89.3
Manes.14G079700 Manihot esculenta HOM05D001837 ORTHO05D003156 2.7e-06 55.5 29 86.2
Thecc.03G090700 Theobroma cacao HOM05D001837 ORTHO05D003156 2.7e-06 55.5 28 89.3
GSVIVG01007989001 Vitis vinifera HOM05D001837 ORTHO05D003156 2.7e-06 55.5 28 89.3
Actinidia04882 Actinidia chinensis HOM05D001837 ORTHO05D003156 3.5e-06 55.1 28 92.9
arahy.Tifrunner.gnm1.ann1.K1S2P8 Arachis hypogaea HOM05D001837 ORTHO05D003156 3.5e-06 55.1 28 92.9
arahy.Tifrunner.gnm1.ann1.U9RCFT Arachis hypogaea HOM05D001837 ORTHO05D003156 3.5e-06 55.1 28 92.9
Gohir.A12G178400 Gossypium hirsutum HOM05D001837 ORTHO05D003156 3.5e-06 55.1 28 89.3
Gohir.D12G180800 Gossypium hirsutum HOM05D001837 ORTHO05D003156 3.5e-06 55.1 28 89.3
Gorai.008G194100 Gossypium raimondii HOM05D001837 ORTHO05D003156 3.5e-06 55.1 28 89.3
SEGI_40155 Sequoiadendron giganteum HOM05D001837 ORTHO05D003156 3.5e-06 55.1 28 89.3
Actinidia27081 Actinidia chinensis HOM05D006266 ORTHO05D008016 4.5e-06 54.7 28 92.9
Aa31LG7G3540 Aethionema arabicum HOM05D001837 ORTHO05D003156 4.5e-06 54.7 29 86.2
Aqoxy3G03432 Aquilegia oxysepala HOM05D001837 ORTHO05D003156 4.5e-06 54.7 28 89.3
arahy.Tifrunner.gnm1.ann1.GD5YP7 Arachis hypogaea HOM05D001837 ORTHO05D003156 4.5e-06 54.7 28 89.3
arahy.Tifrunner.gnm1.ann1.PIZ1S4 Arachis hypogaea HOM05D001837 ORTHO05D003156 4.5e-06 54.7 28 89.3
A09p59690 Brassica napus HOM05D001837 ORTHO05D003156 4.5e-06 54.7 29 86.2
C08p18910 Brassica napus HOM05D001837 ORTHO05D003156 4.5e-06 54.7 29 86.2
BolC5t30412H Brassica oleracea HOM05D001837 ORTHO05D003156 4.5e-06 54.7 29 86.2
BolC8t49515H Brassica oleracea HOM05D001837 ORTHO05D003156 4.5e-06 54.7 29 86.2
BolC8t51858H Brassica oleracea HOM05D001837 ORTHO05D003156 4.5e-06 54.7 29 86.2
BraA08t34956Z Brassica rapa HOM05D001837 ORTHO05D003156 4.5e-06 54.7 29 86.2
BraA09t41346Z Brassica rapa HOM05D001837 ORTHO05D003156 4.5e-06 54.7 29 86.2
Haze_07310 Corylus avellana HOM05D001837 ORTHO05D003156 4.5e-06 54.7 28 89.3
Haze_11995 Corylus avellana HOM05D001837 ORTHO05D003156 4.5e-06 54.7 28 89.3
Eucgr.B00522 Eucalyptus grandis HOM05D001837 ORTHO05D003156 4.5e-06 54.7 28 89.3
Nn4g23208 Nelumbo nucifera HOM05D001837 ORTHO05D003156 4.5e-06 54.7 28 89.3
Nn4g23210 Nelumbo nucifera HOM05D001837 ORTHO05D003156 4.5e-06 54.7 28 89.3
PSO013G0078 Papaver somniferum HOM05D001837 ORTHO05D003156 4.5e-06 54.7 28 89.3
THA.LOC104813882 Tarenaya hassleriana HOM05D001837 ORTHO05D003156 4.5e-06 54.7 29 86.2
CSS0046922 Camellia sinensis var. sinensis HOM05D001837 ORTHO05D003156 5.9e-06 54.3 28 89.3
CANSAT80G2286 Cannabis sativa HOM05D001837 ORTHO05D003156 5.9e-06 54.3 28 89.3
CiPaw.05G133000 Carya illinoinensis HOM05D001837 ORTHO05D003156 5.9e-06 54.3 28 85.7
Ciclev10031963m.g Citrus clementina HOM05D001837 ORTHO05D003156 5.9e-06 54.3 28 85.7
Glyma.17G101300 Glycine max HOM05D001837 ORTHO05D003156 5.9e-06 54.3 28 89.3
Lsat_1_v5_gn_9_27060 Lactuca sativa HOM05D001837 ORTHO05D003156 5.9e-06 54.3 28 89.3
Lj4g0007316 Lotus japonicus HOM05D001837 ORTHO05D003156 5.9e-06 54.3 28 89.3
Lalb_Chr10g0098411 Lupinus albus HOM05D001837 ORTHO05D003156 5.9e-06 54.3 28 85.7
Medtr4g108720 Medicago truncatula HOM05D001837 ORTHO05D003156 5.9e-06 54.3 28 89.3
Medtr5g041650 Medicago truncatula HOM05D001837 ORTHO05D003156 5.9e-06 54.3 28 89.3
Phvul.003G189100 Phaseolus vulgaris HOM05D001837 ORTHO05D003156 5.9e-06 54.3 28 89.3
Psat4g050040 Pisum sativum HOM05D001837 ORTHO05D003156 5.9e-06 54.3 28 89.3
TPR.G9249 Trifolium pratense HOM05D001837 ORTHO05D003156 5.9e-06 54.3 28 89.3
A06p14890 Brassica napus HOM05D001837 ORTHO05D003156 7.8e-06 53.9 29 82.8
Cpa.g.sc1.45 Carica papaya HOM05D001837 ORTHO05D003156 7.8e-06 53.9 28 85.7
Gohir.A03G101800 Gossypium hirsutum HOM05D001837 ORTHO05D003156 7.8e-06 53.9 28 89.3
Gohir.A13G076400 Gossypium hirsutum HOM05D001837 ORTHO05D003156 7.8e-06 53.9 28 89.3
Gohir.D02G126600 Gossypium hirsutum HOM05D001837 ORTHO05D003156 7.8e-06 53.9 28 89.3
Gohir.D13G076000 Gossypium hirsutum HOM05D001837 ORTHO05D003156 7.8e-06 53.9 28 89.3
Gorai.005G142100 Gossypium raimondii HOM05D001837 ORTHO05D003156 7.8e-06 53.9 28 89.3
Gorai.013G086600 Gossypium raimondii HOM05D001837 ORTHO05D003156 7.8e-06 53.9 28 89.3
MD16G1070700 Malus domestica HOM05D001837 ORTHO05D003156 7.8e-06 53.9 80 48.8
Hund02639 Selenicereus undatus HOM05D001837 ORTHO05D003156 7.8e-06 53.9 28 85.7


User provided reference genes

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