Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022704 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 1.1e-198 696.4 365 100.0
CSS0008601 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 6.9e-196 687.2 365 98.6
CSS0039233 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 2.3e-167 592.4 367 87.5
SGA_v2.0_scaffold119G32763 Striga asiatica HOM05D003693 ORTHO05D004698 3.5e-163 578.6 367 84.5
Dinv43405 Davidia involucrata HOM05D003693 ORTHO05D004698 2.9e-162 575.5 367 83.7
Manes.12G004200 Manihot esculenta HOM05D003693 ORTHO05D004698 6.6e-162 574.3 367 82.8
Migut.B01266 Erythranthe guttata HOM05D003693 ORTHO05D004698 8.6e-162 573.9 367 83.9
CiPaw.16G119500 Carya illinoinensis HOM05D003693 ORTHO05D004698 1.5e-161 573.2 367 82.0
TAR563G0002 Trochodendron aralioides HOM05D003693 ORTHO05D004698 1.9e-161 572.8 367 83.1
Duzib128G1866 Durio zibethinus HOM05D003693 ORTHO05D004698 3.3e-161 572.0 367 82.6
Atru.chr12.1748 Acer truncatum HOM05D003693 ORTHO05D004698 5.5e-161 571.2 367 82.6
Haze_19361 Corylus avellana HOM05D003693 ORTHO05D004698 1.2e-160 570.1 369 82.1
Nitab4.5_0005367g0010 Nicotiana tabacum HOM05D003693 ORTHO05D004698 1.2e-160 570.1 367 83.1
Nitab4.5_0001244g0140 Nicotiana tabacum HOM05D003693 ORTHO05D004698 2.8e-160 568.9 367 83.1
Eucgr.H01402 Eucalyptus grandis HOM05D003693 ORTHO05D004698 3.6e-160 568.5 367 82.3
Hma1.2p1_0685F.1_g203180 Hydrangea macrophylla HOM05D003693 ORTHO05D004698 6.1e-160 567.8 367 82.6
Thecc.01G406700 Theobroma cacao HOM05D003693 ORTHO05D004698 6.1e-160 567.8 367 81.7
vmacro13696 Vaccinium macrocarpon HOM05D003693 ORTHO05D004698 6.1e-160 567.8 367 82.8
Cfa020929 Carpinus fangiana HOM05D003693 ORTHO05D004698 8.0e-160 567.4 367 82.8
Thecc.05G189800 Theobroma cacao HOM05D003693 ORTHO05D004698 8.0e-160 567.4 367 82.6
Prupe.6G362600 Prunus persica HOM05D003693 ORTHO05D004698 1.0e-159 567.0 367 82.6
Gorai.012G026300 Gossypium raimondii HOM05D003693 ORTHO05D004698 1.4e-159 566.6 367 82.3
MSTRG.20559 Avicennia marina HOM05D003693 ORTHO05D004698 1.8e-159 566.2 367 82.8
Cpa.g.sc39.19 Carica papaya HOM05D003693 ORTHO05D004698 3.0e-159 565.5 367 82.8
GSVIVG01032211001 Vitis vinifera HOM05D003693 ORTHO05D004698 4.0e-159 565.1 367 82.8
Peaxi162Scf00694g00440 Petunia axillaris HOM05D003693 ORTHO05D004698 6.8e-159 564.3 365 82.2
Potri.019G054500 Populus trichocarpa HOM05D003693 ORTHO05D004698 8.9e-159 563.9 367 82.6
COL.COLO4_12338 Corchorus olitorius HOM05D003693 ORTHO05D004698 1.2e-158 563.5 367 80.9
SalBow6G5509 Salvia bowleyana HOM05D003693 ORTHO05D004698 1.2e-158 563.5 367 81.5
SalBow6G6742 Salvia bowleyana HOM05D003693 ORTHO05D004698 1.2e-158 563.5 367 81.5
Duzib268G0828 Durio zibethinus HOM05D003693 ORTHO05D004698 1.5e-158 563.1 367 81.2
Medtr7g080270 Medicago truncatula HOM05D003693 ORTHO05D004698 2.0e-158 562.8 367 82.3
CANSAT21G0769 Cannabis sativa HOM05D003693 ORTHO05D004698 2.6e-158 562.4 367 82.0
Gohir.D04G022000 Gossypium hirsutum HOM05D003693 ORTHO05D004698 2.6e-158 562.4 367 81.7
TWI36G1545 Tripterygium wilfordii HOM05D003693 ORTHO05D004698 2.6e-158 562.4 367 82.0
MSTRG.17008 Avicennia marina HOM05D003693 ORTHO05D004698 3.4e-158 562.0 367 82.0
Ciclev10011203m.g Citrus clementina HOM05D003693 ORTHO05D004698 3.4e-158 562.0 367 82.6
Gohir.A05G393100 Gossypium hirsutum HOM05D003693 ORTHO05D004698 3.4e-158 562.0 367 81.7
MD12G1263800 Malus domestica HOM05D003693 ORTHO05D004698 4.4e-158 561.6 367 81.7
Sabra19G0063500 Salix brachista HOM05D003693 ORTHO05D004698 4.4e-158 561.6 367 82.0
Lalb_Chr03g0038731 Lupinus albus HOM05D003693 ORTHO05D004698 7.5e-158 560.8 367 82.0
MD04G1246300 Malus domestica HOM05D003693 ORTHO05D004698 9.8e-158 560.5 367 81.7
PSO339G5758 Papaver somniferum HOM05D003693 ORTHO05D004698 9.8e-158 560.5 367 81.5
Oeu014595.1 Olea europaea HOM05D003693 ORTHO05D004698 1.3e-157 560.1 367 82.0
PSO384G0563 Papaver somniferum HOM05D003693 ORTHO05D004698 1.3e-157 560.1 367 81.5
TPR.G33878 Trifolium pratense HOM05D003693 ORTHO05D004698 1.3e-157 560.1 367 82.3
QL10p037598 Quercus lobata HOM05D003693 ORTHO05D004698 1.7e-157 559.7 366 81.7
Lalb_Chr01g0020541 Lupinus albus HOM05D003693 ORTHO05D004698 2.2e-157 559.3 367 82.0
TWI18G0649 Tripterygium wilfordii HOM05D003693 ORTHO05D004698 4.9e-157 558.1 367 81.5
Phvul.008G053200 Phaseolus vulgaris HOM05D003693 ORTHO05D004698 6.3e-157 557.8 367 81.7
Duzib133G0510 Durio zibethinus HOM05D003693 ORTHO05D004698 8.3e-157 557.4 367 80.1
RcHm_v2.0_Chr3g0447661 Rosa chinensis HOM05D003693 ORTHO05D004698 8.3e-157 557.4 369 81.8
Ca_07998_v3 Cicer arietinum L. HOM05D003693 ORTHO05D004698 1.1e-156 557.0 367 81.5
Peaxi162Scf00071g01043 Petunia axillaris HOM05D003693 ORTHO05D004698 1.1e-156 557.0 367 81.7
AUR62023098 Chenopodium quinoa HOM05D003693 ORTHO05D004698 1.8e-156 556.2 367 80.4
AUR62009420 Chenopodium quinoa HOM05D003693 ORTHO05D004698 2.4e-156 555.8 367 80.1
ClCG11G009710 Citrullus lanatus HOM05D003693 ORTHO05D004698 2.4e-156 555.8 367 80.4
Rhsim07G0058800 Rhododendron simsii HOM05D003693 ORTHO05D004698 3.2e-156 555.4 372 81.2
Actinidia08353 Actinidia chinensis HOM05D003693 ORTHO05D004698 4.1e-156 555.1 321 90.3
Gohir.D12G103600 Gossypium hirsutum HOM05D003693 ORTHO05D004698 4.1e-156 555.1 369 80.2
Psat3g102600 Pisum sativum HOM05D003693 ORTHO05D004698 4.1e-156 555.1 367 80.9
FAN02G0024 Fragaria x ananassa HOM05D003693 ORTHO05D004698 5.4e-156 554.7 369 81.3
Lj1g0027377 Lotus japonicus HOM05D003693 ORTHO05D004698 5.4e-156 554.7 367 82.0
TPR.G34077 Trifolium pratense HOM05D003693 ORTHO05D004698 5.4e-156 554.7 367 81.2
Gohir.A12G100800 Gossypium hirsutum HOM05D003693 ORTHO05D004698 7.0e-156 554.3 369 79.9
Aa31LG8G10790 Aethionema arabicum HOM05D003693 ORTHO05D004698 9.2e-156 553.9 367 80.7
CAN.G1619.1 Capsicum annuum HOM05D003693 ORTHO05D004698 1.2e-155 553.5 367 81.2
Glyma.09G249100 Glycine max HOM05D003693 ORTHO05D004698 1.2e-155 553.5 367 81.2
PGSC0003DMG400006778 Solanum tuberosum HOM05D003693 ORTHO05D004698 1.2e-155 553.5 367 81.2
EL10Ac2g04376 Beta vulgaris HOM05D003693 ORTHO05D004698 2.0e-155 552.7 367 80.4
CsaV3_2G010560 Cucumis sativus L. HOM05D003693 ORTHO05D004698 2.0e-155 552.7 367 79.8
FvH4_6g00360 Fragaria vesca HOM05D003693 ORTHO05D004698 4.5e-155 551.6 369 81.0
FAN05G2538 Fragaria x ananassa HOM05D003693 ORTHO05D004698 4.5e-155 551.6 369 80.8
FAN09G1864 Fragaria x ananassa HOM05D003693 ORTHO05D004698 4.5e-155 551.6 369 81.0
unitig_0.g1393 Utricularia gibba HOM05D003693 ORTHO05D004698 5.9e-155 551.2 367 80.7
Solyc01g087870.4 Solanum lycopersicum HOM05D003693 ORTHO05D004698 1.3e-154 550.1 367 80.9
Sopen01g034800 Solanum pennellii HOM05D003693 ORTHO05D004698 1.3e-154 550.1 367 80.9
FAN14G5956 Fragaria x ananassa HOM05D003693 ORTHO05D004698 1.7e-154 549.7 369 80.5
Cc02_g28770 Coffea canephora HOM05D003693 ORTHO05D004698 2.3e-154 549.3 373 78.6
Glyma.18G243300 Glycine max HOM05D003693 ORTHO05D004698 2.3e-154 549.3 367 80.9
ATR1096G033 Amborella trichopoda HOM05D003693 ORTHO05D004698 3.9e-154 548.5 367 79.0
CARHR100130 Cardamine hirsuta HOM05D003693 ORTHO05D004698 3.9e-154 548.5 367 80.7
arahy.Tifrunner.gnm1.ann1.55VZFW Arachis hypogaea HOM05D003693 ORTHO05D004698 5.0e-154 548.1 367 81.5
SalBow5G4957 Salvia bowleyana HOM05D003693 ORTHO05D004698 8.6e-154 547.4 349 84.2
Sp3g21850 Schrenkiella parvula HOM05D003693 ORTHO05D004698 1.1e-153 547.0 367 80.1
BolC7t41766H Brassica oleracea HOM05D003693 ORTHO05D004698 1.9e-153 546.2 367 80.1
Sed0016989 Sechium edule HOM05D003693 ORTHO05D004698 1.9e-153 546.2 367 79.6
Sc10g0000370 Simmondsia chinensis HOM05D003693 ORTHO05D004698 1.9e-153 546.2 367 80.7
PGR119G0062 Punica granatum HOM05D003693 ORTHO05D004698 4.3e-153 545.0 367 79.6
AL3G39260 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 5.6e-153 544.7 367 80.1
C07p12800 Brassica napus HOM05D003693 ORTHO05D004698 5.6e-153 544.7 367 79.8
AT3G24090 Arabidopsis thaliana HOM05D003693 ORTHO05D004698 7.3e-153 544.3 367 80.4
BcaC06g35626 Brassica carinata HOM05D003693 ORTHO05D004698 7.3e-153 544.3 367 79.8
BraA07t28609Z Brassica rapa HOM05D003693 ORTHO05D004698 7.3e-153 544.3 367 79.8
Thhalv10002424m.g Eutrema salsugineum HOM05D003693 ORTHO05D004698 7.3e-153 544.3 367 79.6
Aqoxy5G04181 Aquilegia oxysepala HOM05D003693 ORTHO05D004698 9.5e-153 543.9 367 79.8
BcaB06g26591 Brassica carinata HOM05D003693 ORTHO05D004698 1.2e-152 543.5 367 79.8
arahy.Tifrunner.gnm1.ann1.RCZ69X Arachis hypogaea HOM05D003693 ORTHO05D004698 1.6e-152 543.1 367 80.9
CDE04G2718 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 1.6e-152 543.1 367 77.7
THA.LOC104821617 Tarenaya hassleriana HOM05D003693 ORTHO05D004698 1.6e-152 543.1 368 78.8
A07p08260 Brassica napus HOM05D003693 ORTHO05D004698 2.1e-152 542.7 367 79.6
BcaB03g14607 Brassica carinata HOM05D003693 ORTHO05D004698 2.8e-152 542.3 368 79.6
BcaC01g03357 Brassica carinata HOM05D003693 ORTHO05D004698 2.8e-152 542.3 368 79.6
A03p43420 Brassica napus HOM05D003693 ORTHO05D004698 2.8e-152 542.3 368 79.6
BolC3t17596H Brassica oleracea HOM05D003693 ORTHO05D004698 2.8e-152 542.3 368 79.6
BraA03t13480Z Brassica rapa HOM05D003693 ORTHO05D004698 2.8e-152 542.3 368 79.6
Gorai.008G112800 Gossypium raimondii HOM05D003693 ORTHO05D004698 8.0e-152 540.8 407 72.5
PGR031G3615 Punica granatum HOM05D003693 ORTHO05D004698 1.0e-151 540.4 367 78.5
Lj8C726G3 Lonicera japonica HOM05D003693 ORTHO05D004698 1.4e-151 540.0 322 86.6
Carub.0003s2444 Capsella rubella HOM05D003693 ORTHO05D004698 1.8e-151 539.7 367 79.8
Eucgr.H01630 Eucalyptus grandis HOM05D003693 ORTHO05D004698 1.8e-151 539.7 315 88.6
THA.LOC104808730 Tarenaya hassleriana HOM05D003693 ORTHO05D004698 1.8e-151 539.7 367 79.0
C03p53370 Brassica napus HOM05D003693 ORTHO05D004698 5.2e-151 538.1 368 79.1
SHI13710 Sapria himalayana HOM05D003693 ORTHO05D004698 5.2e-151 538.1 365 78.1
VMungo1383G0289 Vigna mungo HOM05D003693 ORTHO05D004698 6.8e-151 537.7 360 79.4
TAR369G0556 Trochodendron aralioides HOM05D003693 ORTHO05D004698 1.2e-150 537.0 367 80.4
MBI19_g25011_MAGBIO Magnolia biondii HOM05D003693 ORTHO05D004698 2.6e-150 535.8 367 77.9
MELO3C008557.2 Cucumis melo HOM05D003693 ORTHO05D004698 3.4e-150 535.4 367 78.5
DCAR_029706 Daucus carota HOM05D003693 ORTHO05D004698 6.4e-149 531.2 368 78.3
CSS0029083 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 3.5e-147 525.4 372 79.3
Nn2g12199 Nelumbo nucifera HOM05D003693 ORTHO05D004698 3.5e-147 525.4 318 85.5
Ah.10g038580 Amaranthus hybridus HOM05D003693 ORTHO05D004698 6.0e-147 524.6 369 77.0
Cc00_g28470 Coffea canephora HOM05D003693 ORTHO05D004698 1.3e-146 523.5 374 75.9
Lsat_1_v5_gn_1_104980 Lactuca sativa HOM05D003693 ORTHO05D004698 1.7e-146 523.1 367 77.1
ECA248G0053 Erigeron canadensis HOM05D003693 ORTHO05D004698 8.6e-146 520.8 367 76.3
HanXRQChr06g0179741 Helianthus annuus HOM05D003693 ORTHO05D004698 1.6e-144 516.5 367 75.7
SEGI_39911 Sequoiadendron giganteum HOM05D003693 ORTHO05D004698 3.1e-143 512.3 367 74.1
SMO301G0028 Selaginella moellendorffii HOM05D003693 ORTHO05D004698 3.7e-141 505.4 389 71.2
Nitab4.5_0001676g0080 Nicotiana tabacum HOM05D003693 ORTHO05D004698 8.3e-141 504.2 365 76.2
Mapoly0131s0027 Marchantia polymorpha HOM05D003693 ORTHO05D004698 1.3e-138 496.9 367 72.2
HPP92_019436 Vanilla planifolia HOM05D003693 ORTHO05D004698 2.5e-137 492.7 367 72.8
Zm00001eb163520 Zea mays HOM05D003693 ORTHO05D004698 8.1e-136 487.6 368 72.6
Pp3c1_10100 Physcomitrium patens HOM05D003693 ORTHO05D004698 6.8e-135 484.6 367 71.4
Cc00_g27460 Coffea canephora HOM05D003693 ORTHO05D004698 1.2e-134 483.8 370 72.2
Pp3c2_32740 Physcomitrium patens HOM05D003693 ORTHO05D004698 1.3e-133 480.3 367 71.1
Os12g0131100 Oryza sativa ssp. japonica HOM05D003693 ORTHO05D004698 6.0e-131 471.5 339 74.3
AL8G20490 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 2.3e-130 469.5 367 71.7
Eucgr.H01633 Eucalyptus grandis HOM05D003693 ORTHO05D004698 7.3e-129 464.5 339 74.0
CDE07G0727 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 1.3e-125 453.8 277 84.1
AL8G20570 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 3.6e-120 435.6 305 78.4
Manes.13G004500 Manihot esculenta HOM05D003693 ORTHO05D004698 9.6e-113 411.0 367 64.9
MCO09G229 Micromonas commoda HOM05D003693 ORTHO05D004698 6.0e-107 391.7 369 58.5
AagrBONN_evm.TU.Sc2ySwM_344.1788 Anthoceros agrestis HOM05D003693 ORTHO05D004698 7.9e-107 391.3 265 76.6
CSS0010682 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 4.6e-99 365.5 238 81.9
Cre08.g375500 Chlamydomonas reinhardtii HOM05D003693 ORTHO05D004698 3.0e-98 362.8 370 54.6
PRCOL_00001226 Prasinoderma coloniale HOM05D003693 ORTHO05D004698 1.6e-96 357.1 362 56.4
CDE08G0281 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 1.7e-93 347.1 221 83.3
Eucgr.H01403 Eucalyptus grandis HOM05D003693 ORTHO05D004698 6.9e-79 298.5 179 85.5
Cc00_g31680 Coffea canephora HOM05D003693 ORTHO05D004698 3.1e-71 273.1 219 68.9
Eucgr.H01634 Eucalyptus grandis HOM05D003693 ORTHO05D004698 5.3e-71 272.3 235 68.5
Lj9A641G59 Lonicera japonica HOM05D003693 ORTHO05D004698 9.1e-71 271.6 163 86.5
Dinv09309 Davidia involucrata HOM05D003693 ORTHO05D004698 1.0e-66 258.1 149 87.2
Actinidia19423 Actinidia chinensis HOM05D003693 ORTHO05D004698 3.7e-64 249.6 248 61.3
Eucgr.H01405 Eucalyptus grandis HOM05D003693 ORTHO05D004698 4.2e-60 236.1 214 66.8
Aqoxy2G01319 Aquilegia oxysepala HOM05D003693 ORTHO05D031300 8.0e-59 231.9 141 83.7
Aqoxy1G02791 Aquilegia oxysepala HOM05D003693 ORTHO05D004698 3.8e-53 213.0 151 75.5
Aqoxy1G02790 Aquilegia oxysepala HOM05D003693 ORTHO05D004698 1.9e-52 210.7 168 69.0
Haze_26883 Corylus avellana HOM05D003693 ORTHO05D004698 2.0e-49 200.7 180 56.7
Lsat_1_v5_gn_3_45201 Lactuca sativa HOM05D003693 ORTHO05D004698 1.2e-46 191.4 176 63.1
HPP92_019410 Vanilla planifolia HOM05D003693 ORTHO05D004698 5.0e-45 186.0 181 58.0
Sed0025004 Sechium edule HOM05D003693 ORTHO05D004698 2.2e-40 170.6 138 65.9
CDE08G0573 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 4.0e-34 149.8 128 61.7
Lj9A641G58 Lonicera japonica HOM05D003693 ORTHO05D004698 2.4e-31 140.6 176 51.7
Lsat_1_v5_gn_1_126760 Lactuca sativa HOM05D002996 ORTHO05D004698 7.8e-30 135.6 81 84.0
Dinv23140 Davidia involucrata HOM05D004830 ORTHO05D005310 2.5e-28 130.6 74 86.5
Zm00001eb405240 Zea mays HOM05D003693 ORTHO05D004698 5.6e-20 102.8 90 62.2
Lsat_1_v5_gn_2_39580 Lactuca sativa HOM05D003693 ORTHO05D004698 2.6e-17 94.0 61 77.0
CDE04G0915 Ceratophyllum demersum HOM05D003693 ORTHO05D021141 3.2e-15 87.0 69 62.3
Migut.C00049 Erythranthe guttata HOM05D003693 ORTHO05D004698 4.3e-12 76.6 84 56.0
CDE02G0831 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 9.6e-12 75.5 41 87.8
Eucgr.H01408 Eucalyptus grandis HOM05D003693 ORTHO05D191043 4.6e-06 56.6 35 77.1


User provided reference genes

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