Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022685 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 7.1e-196 687.2 371 100.0
CSS0021991 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 1.4e-188 662.9 372 97.6
Dinv33627 Davidia involucrata HOM05D003676 ORTHO05D004262 2.9e-109 399.4 377 65.5
Dinv40087 Davidia involucrata HOM05D003676 ORTHO05D004262 1.5e-108 397.1 378 66.4
CSS0018215 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 4.0e-106 389.0 387 65.1
Hma1.2p1_0956F.1_g241320 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 1.1e-103 380.9 406 61.8
Lj2A468T73 Lonicera japonica HOM05D003676 ORTHO05D004262 4.3e-100 369.0 384 61.2
vmacro18414 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 4.3e-100 369.0 394 64.5
Cc07_g10720 Coffea canephora HOM05D003676 ORTHO05D004262 7.3e-100 368.2 384 63.0
QL06p032755 Quercus lobata HOM05D003676 ORTHO05D004262 7.5e-97 358.2 387 59.4
Actinidia17444 Actinidia chinensis HOM05D003676 ORTHO05D004262 4.6e-94 349.0 382 59.7
Rhsim10G0212200 Rhododendron simsii HOM05D003676 ORTHO05D004262 1.3e-93 347.4 389 59.9
CiPaw.07G058500 Carya illinoinensis HOM05D003676 ORTHO05D004262 5.0e-93 345.5 393 61.3
Actinidia30997 Actinidia chinensis HOM05D003676 ORTHO05D004262 2.5e-92 343.2 381 60.1
Potri.005G114100 Populus trichocarpa HOM05D003676 ORTHO05D004262 1.2e-91 340.9 389 59.4
Cfa006972 Carpinus fangiana HOM05D003676 ORTHO05D004262 6.2e-91 338.6 380 60.5
Sabra05G0093400 Salix brachista HOM05D003676 ORTHO05D004262 1.0e-90 337.8 398 57.5
Sopen02g028680 Solanum pennellii HOM05D003676 ORTHO05D004262 1.8e-90 337.0 379 60.9
Hma1.2p1_0258F.1_g104145 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 8.9e-90 334.7 457 53.6
Solyc02g083890.4 Solanum lycopersicum HOM05D003676 ORTHO05D004262 2.9e-88 329.7 379 59.4
Rhsim08G0033700 Rhododendron simsii HOM05D003676 ORTHO05D004262 7.0e-87 325.1 394 58.6
Duzib187G0981 Durio zibethinus HOM05D003676 ORTHO05D004262 2.0e-86 323.6 388 57.5
Nn5g30150 Nelumbo nucifera HOM05D003676 ORTHO05D004262 6.0e-86 322.0 392 57.9
TAR381G0332 Trochodendron aralioides HOM05D003676 ORTHO05D004262 6.0e-86 322.0 377 58.4
Peaxi162Scf00083g00320 Petunia axillaris HOM05D003676 ORTHO05D004262 6.6e-85 318.5 387 55.3
CAN.G1671.14 Capsicum annuum HOM05D003676 ORTHO05D004262 8.6e-85 318.2 399 57.1
Ciclev10025949m.g Citrus clementina HOM05D003676 ORTHO05D004262 5.6e-84 315.5 376 56.9
Nitab4.5_0003382g0020 Nicotiana tabacum HOM05D003676 ORTHO05D004262 3.6e-83 312.8 378 57.4
MD02G1132500 Malus domestica HOM05D003676 ORTHO05D004262 6.2e-83 312.0 393 56.5
PGSC0003DMG400003640 Solanum tuberosum HOM05D003676 ORTHO05D004262 1.4e-82 310.8 377 57.6
MD15G1246000 Malus domestica HOM05D003676 ORTHO05D004262 1.5e-81 307.4 386 56.2
Nitab4.5_0005660g0010 Nicotiana tabacum HOM05D003676 ORTHO05D004262 5.8e-81 305.4 387 55.8
Thecc.01G019000 Theobroma cacao HOM05D003676 ORTHO05D004262 5.8e-81 305.4 385 57.4
DCAR_016607 Daucus carota HOM05D003676 ORTHO05D004262 9.8e-81 304.7 378 55.0
Manes.01G145700 Manihot esculenta HOM05D003676 ORTHO05D004262 1.7e-80 303.9 377 56.5
TAR376G0994 Trochodendron aralioides HOM05D003676 ORTHO05D004262 2.9e-80 303.1 375 55.7
arahy.Tifrunner.gnm1.ann1.3LB61T Arachis hypogaea HOM05D003676 ORTHO05D004262 1.1e-79 301.2 380 57.1
RcHm_v2.0_Chr2g0099451 Rosa chinensis HOM05D003676 ORTHO05D004262 1.4e-79 300.8 392 54.8
arahy.Tifrunner.gnm1.ann1.CCI0LY Arachis hypogaea HOM05D003676 ORTHO05D004262 2.4e-79 300.1 382 56.8
Prupe.7G168100 Prunus persica HOM05D003676 ORTHO05D004262 2.4e-79 300.1 405 53.1
MSTRG.2714 Avicennia marina HOM05D003676 ORTHO05D004262 2.7e-78 296.6 397 52.9
Eucgr.I02350 Eucalyptus grandis HOM05D003676 ORTHO05D004262 1.3e-77 294.3 388 56.4
TAR628G0168 Trochodendron aralioides HOM05D003676 ORTHO05D004262 1.3e-77 294.3 367 56.4
CANSAT01G0038 Cannabis sativa HOM05D003676 ORTHO05D004262 5.1e-77 292.4 378 54.8
Lj4g0000664 Lotus japonicus HOM05D003676 ORTHO05D004262 5.1e-77 292.4 373 54.4
Atru.chr3.798 Acer truncatum HOM05D003676 ORTHO05D004262 6.6e-77 292.0 402 53.7
Cpa.g.sc6.251 Carica papaya HOM05D003676 ORTHO05D004262 1.2e-75 287.7 392 52.3
MBI05_g37447_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 2.1e-75 287.0 374 51.3
Duzib264G0036 Durio zibethinus HOM05D003676 ORTHO05D004262 3.6e-75 286.2 384 54.7
Actinidia22976 Actinidia chinensis HOM05D003676 ORTHO05D004262 4.7e-75 285.8 300 62.3
PGR119G1864 Punica granatum HOM05D003676 ORTHO05D004262 4.7e-75 285.8 401 53.6
Hund16490 Selenicereus undatus HOM05D003676 ORTHO05D004262 6.2e-75 285.4 399 52.4
Oeu063192.2 Olea europaea HOM05D003676 ORTHO05D004262 2.3e-74 283.5 358 54.7
MELO3C013767.2 Cucumis melo HOM05D003676 ORTHO05D004262 1.4e-71 274.2 401 50.9
FAN26G1220 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.9e-71 273.9 388 52.6
FvH4_1g11840 Fragaria vesca HOM05D003676 ORTHO05D004262 2.4e-71 273.5 403 51.4
PSO541G5658 Papaver somniferum HOM05D003676 ORTHO05D004262 3.2e-71 273.1 376 52.4
FAN19G1818 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.6e-70 270.8 394 52.3
Lalb_Chr05g0212401 Lupinus albus HOM05D003676 ORTHO05D004262 2.1e-70 270.4 383 52.5
Psat4g099080 Pisum sativum HOM05D003676 ORTHO05D004262 2.7e-70 270.0 386 51.6
ClCG10G000750 Citrullus lanatus HOM05D003676 ORTHO05D004262 3.5e-70 269.6 389 50.9
FAN23G0443 Fragaria x ananassa HOM05D003676 ORTHO05D004262 4.6e-70 269.2 383 53.3
PSO675G7127 Papaver somniferum HOM05D003676 ORTHO05D004262 7.8e-70 268.5 380 50.8
CsaV3_3G000800 Cucumis sativus L. HOM05D003676 ORTHO05D004262 1.0e-69 268.1 391 50.9
Manes.02G104500 Manihot esculenta HOM05D003676 ORTHO05D004262 1.3e-69 267.7 341 56.3
Oeu012589.1 Olea europaea HOM05D003676 ORTHO05D004262 1.1e-68 264.6 358 53.9
Gohir.A11G175400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.5e-68 264.2 380 51.3
Nn1g05889 Nelumbo nucifera HOM05D003676 ORTHO05D004262 7.3e-68 261.9 372 51.9
Glyma.01G166300 Glycine max HOM05D003676 ORTHO05D004262 4.7e-67 259.2 377 52.8
Oeu048461.1 Olea europaea HOM05D003676 ORTHO05D004262 4.7e-67 259.2 345 55.1
Medtr8g075950 Medicago truncatula HOM05D003676 ORTHO05D004262 1.4e-66 257.7 382 51.0
TPR.G30058 Trifolium pratense HOM05D003676 ORTHO05D004262 2.4e-66 256.9 381 50.4
Sed0017342 Sechium edule HOM05D003676 ORTHO05D004262 2.2e-64 250.4 382 47.1
Aa31LG1G14730 Aethionema arabicum HOM05D003676 ORTHO05D004262 2.9e-64 250.0 365 49.9
Hund14045 Selenicereus undatus HOM05D003676 ORTHO05D004262 8.4e-64 248.4 386 46.1
Lj4A218T52 Lonicera japonica HOM05D003676 ORTHO05D004262 1.9e-63 247.3 384 48.7
VMungo0251G0225 Vigna mungo HOM05D003676 ORTHO05D004262 9.3e-63 245.0 401 49.6
Gohir.D11G182900 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.2e-62 244.6 379 48.8
Phvul.003G262100 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 2.7e-62 243.4 379 52.5
AUR62029464 Chenopodium quinoa HOM05D003676 ORTHO05D004262 7.8e-62 241.9 358 49.4
Glyma.11G077200 Glycine max HOM05D003676 ORTHO05D004262 1.0e-61 241.5 374 50.0
CARHR281500 Cardamine hirsuta HOM05D003676 ORTHO05D004262 3.9e-61 239.6 371 50.7
SalBow3G1193 Salvia bowleyana HOM05D003676 ORTHO05D004262 6.6e-61 238.8 340 52.6
GSVIVG01018782001 Vitis vinifera HOM05D003676 ORTHO05D004262 6.6e-61 238.8 263 59.3
AT5G66230 Arabidopsis thaliana HOM05D003676 ORTHO05D003783 3.3e-60 236.5 377 48.8
Glyma.16G128800 Glycine max HOM05D003676 ORTHO05D004262 1.3e-59 234.6 398 47.5
Gorai.008G063100 Gossypium raimondii HOM05D003676 ORTHO05D004262 6.2e-59 232.3 374 50.3
MBI05_g30743_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 6.2e-59 232.3 374 43.6
TWI09G1351 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 8.1e-59 231.9 368 47.8
Gorai.007G194900 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.4e-58 231.1 430 44.4
COL.COLO4_21910 Corchorus olitorius HOM05D003676 ORTHO05D004262 9.0e-58 228.4 390 46.7
Gohir.D12G060000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 9.0e-58 228.4 376 49.7
Gohir.A12G059600 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.5e-57 227.6 380 49.7
Ca_22374_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 2.6e-57 226.9 381 46.5
FAN28G1902 Fragaria x ananassa HOM05D003676 ORTHO05D004262 5.8e-57 225.7 379 47.0
Glyma.02G048700 Glycine max HOM05D003676 ORTHO05D004262 7.6e-57 225.3 394 47.2
ECA232G1625 Erigeron canadensis HOM05D003676 ORTHO05D004262 1.3e-56 224.6 378 43.9
Potri.007G057800 Populus trichocarpa HOM05D003676 ORTHO05D004262 2.9e-56 223.4 385 48.6
Aqoxy6G02292 Aquilegia oxysepala HOM05D003676 ORTHO05D004262 3.8e-56 223.0 380 46.3
Gohir.A02G170700 Gossypium hirsutum HOM05D003676 ORTHO05D004262 4.9e-56 222.6 438 43.6
Carub.0008s2827 Capsella rubella HOM05D003676 ORTHO05D004262 6.4e-56 222.2 378 46.8
Sc07g0000980 Simmondsia chinensis HOM05D003676 ORTHO05D004262 2.4e-55 220.3 338 50.9
Gohir.D11G183000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 4.2e-55 219.5 324 51.2
Ca_25824_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 7.1e-55 218.8 373 47.2
Thhalv10004614m.g Eutrema salsugineum HOM05D003676 ORTHO05D004262 1.2e-54 218.0 372 45.7
Gorai.007G195000 Gossypium raimondii HOM05D003676 ORTHO05D004262 4.6e-54 216.1 324 50.6
Gohir.D03G009400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.0e-53 214.9 451 43.2
Sc16g0002190 Simmondsia chinensis HOM05D003676 ORTHO05D004262 3.0e-53 213.4 371 43.7
A09p10110 Brassica napus HOM05D003676 ORTHO05D004262 5.1e-53 212.6 381 47.0
AUR62003369 Chenopodium quinoa HOM05D003676 ORTHO05D004262 1.1e-52 211.5 370 46.2
C09p11980 Brassica napus HOM05D003676 ORTHO05D004262 2.5e-52 210.3 380 46.6
TWI53G0168 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 2.5e-52 210.3 404 44.8
BraA09t36654Z Brassica rapa HOM05D003676 ORTHO05D004262 3.3e-52 209.9 382 45.0
Lsat_1_v5_gn_4_146360 Lactuca sativa HOM05D003676 ORTHO05D004262 9.6e-52 208.4 333 48.0
Haze_03763 Corylus avellana HOM05D003676 ORTHO05D004262 2.1e-51 207.2 192 67.2
BolC9t54086H Brassica oleracea HOM05D003676 ORTHO05D004262 3.6e-51 206.5 380 45.3
Gorai.003G009600 Gossypium raimondii HOM05D003676 ORTHO05D004262 3.1e-50 203.4 456 42.1
Sp2g30470 Schrenkiella parvula HOM05D003676 ORTHO05D004262 3.1e-50 203.4 373 44.5
Phvul.002G108800 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 5.3e-50 202.6 346 46.5
SGA_v2.0_scaffold78G25382 Striga asiatica HOM05D003676 ORTHO05D004262 6.9e-50 202.2 376 43.1
TPR.G18183 Trifolium pratense HOM05D003676 ORTHO05D004262 3.4e-49 199.9 375 45.9
Ah.03g148760 Amaranthus hybridus HOM05D003676 ORTHO05D004262 9.9e-49 198.4 347 45.0
unitig_736.g22721 Utricularia gibba HOM05D003676 ORTHO05D004262 9.9e-49 198.4 358 45.3
Nn1g05888 Nelumbo nucifera HOM05D003676 ORTHO05D004262 1.9e-47 194.1 378 40.2
THA.LOC104819178 Tarenaya hassleriana HOM05D003676 ORTHO05D004262 1.9e-47 194.1 386 42.5
HPP92_020902 Vanilla planifolia HOM05D003676 ORTHO05D004262 1.9e-47 194.1 379 44.1
HanXRQChr09g0256601 Helianthus annuus HOM05D003676 ORTHO05D004262 2.1e-46 190.7 336 42.6
HanXRQChr15g0487251 Helianthus annuus HOM05D003676 ORTHO05D004262 2.1e-46 190.7 334 41.6
Medtr5g022010 Medicago truncatula HOM05D003676 ORTHO05D004262 2.3e-45 187.2 380 43.4
CDE05G2608 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 3.7e-43 179.9 357 42.6
Lsat_1_v5_gn_3_74521 Lactuca sativa HOM05D003676 ORTHO05D004262 2.0e-41 174.1 340 44.7
AL5G31630 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 3.4e-41 173.3 374 38.0
AL8G45300 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 2.2e-40 170.6 234 53.0
SHI32179 Sapria himalayana HOM05D003676 ORTHO05D004262 4.9e-40 169.5 349 38.7
Zm00001eb224920 Zea mays HOM05D003676 ORTHO05D004262 1.4e-39 167.9 397 39.0
unitig_899.g14713 Utricularia gibba HOM05D003676 ORTHO05D004262 1.9e-39 167.5 319 42.0
Psat2g154560 Pisum sativum HOM05D003676 ORTHO05D004262 5.5e-39 166.0 370 41.4
Lalb_Chr09g0321731 Lupinus albus HOM05D003676 ORTHO05D004262 1.6e-38 164.5 368 39.7
ECA246G1385 Erigeron canadensis HOM05D003676 ORTHO05D004262 6.0e-38 162.5 316 42.7
SEGI_09532 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 7.9e-38 162.2 353 38.8
SEGI_21114 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 7.9e-38 162.2 353 38.8
Os10g0577400 Oryza sativa ssp. japonica HOM05D003676 ORTHO05D004262 6.3e-35 152.5 392 36.5
Migut.H01153 Erythranthe guttata HOM05D003676 ORTHO05D004262 1.1e-34 151.8 342 42.4
Sp5g10990 Schrenkiella parvula HOM05D003676 ORTHO05D004262 1.8e-34 151.0 382 35.9
vmacro23249 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 1.8e-34 151.0 342 41.5
vmacro23473 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 1.8e-34 151.0 342 41.5
CDE05G0776 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 1.5e-33 147.9 273 48.4
ATR0149G006 Amborella trichopoda HOM05D003676 ORTHO05D004262 3.8e-32 143.3 394 37.1
Zm00001eb024930 Zea mays HOM05D003676 ORTHO05D004262 6.5e-32 142.5 378 37.0
Atru.chr1.3640 Acer truncatum HOM05D003676 ORTHO05D004262 7.2e-31 139.0 136 66.9
DCAR_025998 Daucus carota HOM05D003676 ORTHO05D004262 2.1e-30 137.5 254 43.7
Nitab4.5_0000188g0110 Nicotiana tabacum HOM05D003676 ORTHO05D004262 1.9e-28 131.0 233 47.6
Carub.0005s1760 Capsella rubella HOM05D003676 ORTHO05D004262 2.5e-28 130.6 369 36.0
BcaNung04494 Brassica carinata HOM05D003676 ORTHO05D004262 3.3e-28 130.2 271 41.3
vmacro22131 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 4.3e-28 129.8 355 37.2
PGSC0003DMG400023891 Solanum tuberosum HOM05D003676 ORTHO05D004262 8.2e-27 125.6 292 38.7
AT3G51230 Arabidopsis thaliana HOM05D003676 ORTHO05D004262 6.9e-26 122.5 215 41.9
Atru.chr1.3647 Acer truncatum HOM05D003676 ORTHO05D004262 9.1e-26 122.1 349 35.0
Nitab4.5_0002337g0030 Nicotiana tabacum HOM05D003676 ORTHO05D004262 1.3e-24 118.2 336 35.7
CARHR160810 Cardamine hirsuta HOM05D003676 ORTHO05D004262 1.4e-23 114.8 221 43.9
A01p23560 Brassica napus HOM05D003676 ORTHO05D004262 5.5e-23 112.8 217 41.9
BraA01t02262Z Brassica rapa HOM05D003676 ORTHO05D004262 5.5e-23 112.8 217 41.9
BcaNung00393 Brassica carinata HOM05D003676 ORTHO05D004262 7.2e-23 112.5 248 40.3
Solyc02g062170.3 Solanum lycopersicum HOM05D003676 ORTHO05D004262 3.6e-22 110.2 292 37.0
BcaC09g50089 Brassica carinata HOM05D003676 ORTHO05D004262 1.8e-21 107.8 226 43.4
C01p29220 Brassica napus HOM05D003676 ORTHO05D004262 1.8e-21 107.8 226 43.4
Gorai.010G060700 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.8e-21 107.8 213 45.1
RcHm_v2.0_Chr6g0272671 Rosa chinensis HOM05D003676 ORTHO05D004262 1.8e-21 107.8 140 54.3
Sopen02g013140 Solanum pennellii HOM05D003676 ORTHO05D004262 2.3e-21 107.5 292 36.0
HanXRQChr16g0531461 Helianthus annuus HOM05D003676 ORTHO05D004262 1.1e-18 98.6 245 36.3
SEGI_24904 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 1.2e-17 95.1 301 30.2
Nn1g06616 Nelumbo nucifera HOM05D003676 ORTHO05D004262 4.4e-12 76.6 131 48.1
Nn8g38913 Nelumbo nucifera HOM05D003676 ORTHO05D004262 1.8e-10 71.2 67 53.7
SMO340G0107 Selaginella moellendorffii HOM05D003676 ORTHO05D004262 1.1e-07 62.0 371 27.0
Pp3c2_17070 Physcomitrium patens HOM05D032375 ORTHO05D030105 1.5e-07 61.6 95 38.9
TAR629G3197 Trochodendron aralioides HOM05D003676 ORTHO05D004262 1.9e-07 61.2 116 43.1
Gohir.D09G239350 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.7e-06 57.4 64 57.8
Gorai.006G262100 Gossypium raimondii HOM05D003676 ORTHO05D004262 6.1e-06 56.2 64 56.2
Zm00001eb167470 Zea mays HOM05D003676 ORTHO05D004262 8.0e-06 55.8 73 41.1


User provided reference genes

Program Settings