Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022683 Camellia sinensis var. sinensis HOM05D004714 ORTHO05D005614 1.0e-90 336.7 161 100.0
CSS0001667 Camellia sinensis var. sinensis HOM05D004714 ORTHO05D005614 4.9e-45 184.9 99 92.9
Actinidia25713 Actinidia chinensis HOM05D004714 ORTHO05D005614 2.5e-41 172.6 99 84.8
CiPaw.08G034200 Carya illinoinensis HOM05D004714 ORTHO05D005614 2.1e-40 169.5 99 83.8
Lj7C659G12 Lonicera japonica HOM05D004714 ORTHO05D005614 3.1e-39 165.6 99 80.8
Haze_14511 Corylus avellana HOM05D004714 ORTHO05D005614 4.0e-39 165.2 99 80.8
Lj7A660G39 Lonicera japonica HOM05D004714 ORTHO05D005614 6.9e-39 164.5 99 80.8
Dinv25399 Davidia involucrata HOM05D004714 ORTHO05D005614 9.0e-39 164.1 99 80.8
MSTRG.10455 Avicennia marina HOM05D004714 ORTHO05D005614 1.5e-38 163.3 99 80.8
Cc05_g03940 Coffea canephora HOM05D004714 ORTHO05D005614 2.6e-38 162.5 99 80.8
Eucgr.I01084 Eucalyptus grandis HOM05D004714 ORTHO05D005614 2.6e-38 162.5 99 79.8
Sc24g0003530 Simmondsia chinensis HOM05D004714 ORTHO05D005614 2.6e-38 162.5 99 76.8
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 4.5e-38 161.8 99 79.8
ECA236G1620 Erigeron canadensis HOM05D004714 ORTHO05D005614 7.6e-38 161.0 99 78.8
QL08p018134 Quercus lobata HOM05D004714 ORTHO05D005614 7.6e-38 161.0 99 77.8
Rhsim05G0122400 Rhododendron simsii HOM05D004714 ORTHO05D005614 1.3e-37 160.2 97 82.5
Oeu031756.1 Olea europaea HOM05D004714 ORTHO05D005614 1.7e-37 159.8 99 76.8
SGA_v2.0_scaffold63G21841 Striga asiatica HOM05D004714 ORTHO05D005614 1.7e-37 159.8 99 76.8
Atru.chr7.820 Acer truncatum HOM05D004714 ORTHO05D005614 2.9e-37 159.1 99 76.8
HanXRQChr06g0179551 Helianthus annuus HOM05D004714 ORTHO05D005614 4.9e-37 158.3 99 77.8
Sopen01g033030 Solanum pennellii HOM05D004714 ORTHO05D005614 4.9e-37 158.3 99 77.8
CANSAT11G1559 Cannabis sativa HOM05D004714 ORTHO05D005614 6.5e-37 157.9 99 79.8
Manes.14G158566 Manihot esculenta HOM05D004714 ORTHO05D005614 6.5e-37 157.9 99 75.8
QL11p004848 Quercus lobata HOM05D004714 ORTHO05D005614 6.5e-37 157.9 99 77.8
HanXRQChr05g0138351 Helianthus annuus HOM05D004714 ORTHO05D005614 8.4e-37 157.5 99 77.8
MD13G1245000 Malus domestica HOM05D004714 ORTHO05D005614 8.4e-37 157.5 99 75.8
Duzib168G0788 Durio zibethinus HOM05D004714 ORTHO05D005614 1.1e-36 157.1 97 79.4
DCAR_002998 Daucus carota HOM05D004714 ORTHO05D005614 1.4e-36 156.8 99 75.8
CAN.G992.24 Capsicum annuum HOM05D004714 ORTHO05D005614 1.9e-36 156.4 99 75.8
MD03G1036000 Malus domestica HOM05D004714 ORTHO05D005614 1.9e-36 156.4 99 73.7
Solyc01g081470.4 Solanum lycopersicum HOM05D004714 ORTHO05D005614 1.9e-36 156.4 99 75.8
Gohir.A08G018200 Gossypium hirsutum HOM05D004714 ORTHO05D005614 2.5e-36 156.0 99 74.7
Gohir.D08G028800 Gossypium hirsutum HOM05D004714 ORTHO05D005614 2.5e-36 156.0 99 74.7
Gorai.004G025900 Gossypium raimondii HOM05D004714 ORTHO05D005614 2.5e-36 156.0 99 74.7
Nitab4.5_0006785g0020 Nicotiana tabacum HOM05D004714 ORTHO05D005614 2.5e-36 156.0 99 75.8
MBI07_g09259_MAGBIO Magnolia biondii HOM05D004714 ORTHO05D005614 3.2e-36 155.6 99 75.8
vmacro19765 Vaccinium macrocarpon HOM05D004714 ORTHO05D005614 4.2e-36 155.2 106 75.5
Peaxi162Scf00907g00027 Petunia axillaris HOM05D004714 ORTHO05D005614 5.5e-36 154.8 99 74.7
Ciclev10009101m.g Citrus clementina HOM05D004714 ORTHO05D005614 7.1e-36 154.5 99 76.8
QL05p067644 Quercus lobata HOM05D004714 ORTHO05D005614 7.1e-36 154.5 97 78.4
Rhsim08G0112000 Rhododendron simsii HOM05D004714 ORTHO05D005614 9.3e-36 154.1 99 79.8
PGSC0003DMG400031122 Solanum tuberosum HOM05D004714 ORTHO05D005614 9.3e-36 154.1 99 76.8
Cpa.g.sc173.21 Carica papaya HOM05D004714 ORTHO05D005614 1.2e-35 153.7 99 77.8
Prupe.1G079700 Prunus persica HOM05D004714 ORTHO05D005614 1.2e-35 153.7 99 74.7
Migut.L01902 Erythranthe guttata HOM05D004714 ORTHO05D005614 1.6e-35 153.3 99 75.8
Potri.018G088400 Populus trichocarpa HOM05D004714 ORTHO05D005614 1.6e-35 153.3 99 75.8
Duzib160G0192 Durio zibethinus HOM05D004714 ORTHO05D005614 2.1e-35 152.9 99 74.7
TAR623G1076 Trochodendron aralioides HOM05D004714 ORTHO05D005614 2.1e-35 152.9 99 76.8
Nitab4.5_0000792g0180 Nicotiana tabacum HOM05D004714 ORTHO05D005614 3.5e-35 152.1 97 75.3
PGR142G4249 Punica granatum HOM05D004714 ORTHO05D005614 4.6e-35 151.8 99 74.7
ClCG03G002280 Citrullus lanatus HOM05D004714 ORTHO05D005614 6.0e-35 151.4 97 75.3
Thecc.09G180100 Theobroma cacao HOM05D004714 ORTHO05D005614 1.0e-34 150.6 99 75.8
CsaV3_1G012970 Cucumis sativus L. HOM05D004714 ORTHO05D005614 1.3e-34 150.2 99 74.7
FAN17G0676 Fragaria x ananassa HOM05D004714 ORTHO05D005614 1.3e-34 150.2 99 71.7
RcHm_v2.0_Chr4g0400411 Rosa chinensis HOM05D004714 ORTHO05D005614 1.3e-34 150.2 99 71.7
FvH4_4g07660 Fragaria vesca HOM05D004714 ORTHO05D005614 1.8e-34 149.8 99 70.7
FAN12G0160 Fragaria x ananassa HOM05D004714 ORTHO05D005614 1.8e-34 149.8 99 70.7
FAN07G0359 Fragaria x ananassa HOM05D004714 ORTHO05D005614 2.3e-34 149.4 99 70.7
CARHR271100 Cardamine hirsuta HOM05D004714 ORTHO05D005614 3.0e-34 149.1 99 75.8
MELO3C005041.2 Cucumis melo HOM05D004714 ORTHO05D005614 3.9e-34 148.7 99 73.7
Sabra18G0076900 Salix brachista HOM05D004714 ORTHO05D005614 3.9e-34 148.7 97 74.2
ATR0686G131 Amborella trichopoda HOM05D004714 ORTHO05D005614 5.1e-34 148.3 99 70.7
Nn4g22433 Nelumbo nucifera HOM05D004714 ORTHO05D005614 5.1e-34 148.3 99 71.7
PSO541G2874 Papaver somniferum HOM05D004714 ORTHO05D005614 5.1e-34 148.3 99 72.7
RcHm_v2.0_Chr4g0400471 Rosa chinensis HOM05D004714 ORTHO05D005614 5.1e-34 148.3 99 71.7
TWI32G1166 Tripterygium wilfordii HOM05D004714 ORTHO05D005614 5.1e-34 148.3 99 74.7
BcaC04g19980 Brassica carinata HOM05D004714 ORTHO05D005614 6.7e-34 147.9 99 73.7
C09p49140 Brassica napus HOM05D004714 ORTHO05D005614 6.7e-34 147.9 99 73.7
BolC9t57763H Brassica oleracea HOM05D004714 ORTHO05D005614 6.7e-34 147.9 99 73.7
PSO675G7537 Papaver somniferum HOM05D004714 ORTHO05D005614 8.7e-34 147.5 99 71.7
A10p14730 Brassica napus HOM05D004714 ORTHO05D005614 1.5e-33 146.7 99 72.7
Sed0009644 Sechium edule HOM05D004714 ORTHO05D005614 1.9e-33 146.4 99 71.7
Lalb_Chr01g0012111 Lupinus albus HOM05D004714 ORTHO05D005614 2.5e-33 146.0 99 71.7
Nn3g18335 Nelumbo nucifera HOM05D004714 ORTHO05D005614 4.3e-33 145.2 99 71.7
RcHm_v2.0_Chr4g0400331 Rosa chinensis HOM05D004714 ORTHO05D005614 4.3e-33 145.2 99 69.7
BcaB08g36090 Brassica carinata HOM05D004714 ORTHO05D005614 5.7e-33 144.8 99 72.7
BraA10t43556Z Brassica rapa HOM05D004714 ORTHO05D005614 5.7e-33 144.8 99 72.7
SalBow4G0166 Salvia bowleyana HOM05D004714 ORTHO05D005614 5.7e-33 144.8 99 70.7
EL10Ac6g14222 Beta vulgaris HOM05D004714 ORTHO05D005614 7.4e-33 144.4 99 75.8
Medtr4g009880 Medicago truncatula HOM05D004714 ORTHO05D005614 7.4e-33 144.4 99 69.7
Aqoxy7G03018 Aquilegia oxysepala HOM05D004714 ORTHO05D005614 9.7e-33 144.1 99 72.7
Aqoxy7G03753 Aquilegia oxysepala HOM05D004714 ORTHO05D005614 9.7e-33 144.1 99 72.7
unitig_8.g4678 Utricularia gibba HOM05D004714 ORTHO05D005614 1.6e-32 143.3 99 68.7
Os01g0976600 Oryza sativa ssp. japonica HOM05D004714 ORTHO05D005614 2.2e-32 142.9 99 71.7
SalBow4G0136 Salvia bowleyana HOM05D004714 ORTHO05D005614 2.2e-32 142.9 99 69.7
GSVIVG01024342001 Vitis vinifera HOM05D004714 ORTHO05D005614 2.2e-32 142.9 99 68.7
RcHm_v2.0_Chr4g0400601 Rosa chinensis HOM05D004714 ORTHO05D005614 2.8e-32 142.5 99 68.7
Ca_12516_v3 Cicer arietinum L. HOM05D004714 ORTHO05D005614 6.3e-32 141.4 99 66.7
Ca_12517_v3 Cicer arietinum L. HOM05D004714 ORTHO05D005614 6.3e-32 141.4 99 66.7
COL.COLO4_36489 Corchorus olitorius HOM05D004714 ORTHO05D005614 6.3e-32 141.4 99 70.7
Glyma.07G028400 Glycine max HOM05D004714 ORTHO05D005614 6.3e-32 141.4 99 68.7
BraA03t10598Z Brassica rapa HOM05D004714 ORTHO05D005614 8.2e-32 141.0 99 70.7
A03p12900 Brassica napus HOM05D004714 ORTHO05D005614 1.1e-31 140.6 99 70.7
C03p15050 Brassica napus HOM05D004714 ORTHO05D005614 1.1e-31 140.6 99 70.7
BolC3t13947H Brassica oleracea HOM05D004714 ORTHO05D005614 1.1e-31 140.6 99 70.7
Glyma.08G214400 Glycine max HOM05D004714 ORTHO05D005614 1.1e-31 140.6 99 68.7
AL8G33270 Arabidopsis lyrata HOM05D004714 ORTHO05D005614 1.8e-31 139.8 99 71.7
AT5G57300 Arabidopsis thaliana HOM05D004714 ORTHO05D005614 1.8e-31 139.8 99 71.7
BcaB01g04462 Brassica carinata HOM05D004714 ORTHO05D005614 1.8e-31 139.8 102 68.6
AUR62041230 Chenopodium quinoa HOM05D004714 ORTHO05D005614 1.8e-31 139.8 92 72.8
Psat7g257720 Pisum sativum HOM05D004714 ORTHO05D005614 2.4e-31 139.4 99 67.7
VMungo0331G1132 Vigna mungo HOM05D004714 ORTHO05D005614 2.4e-31 139.4 99 67.7
Thhalv10014276m.g Eutrema salsugineum HOM05D004714 ORTHO05D005614 3.1e-31 139.0 99 70.7
Sp6g19030 Schrenkiella parvula HOM05D004714 ORTHO05D005614 4.1e-31 138.7 99 70.7
TWI34G0504 Tripterygium wilfordii HOM05D004714 ORTHO05D005614 4.1e-31 138.7 99 72.7
Lj3g0005475 Lotus japonicus HOM05D004714 ORTHO05D005614 5.3e-31 138.3 99 68.7
Aa31LG3G13180 Aethionema arabicum HOM05D004714 ORTHO05D005614 6.9e-31 137.9 99 69.7
AUR62014206 Chenopodium quinoa HOM05D004714 ORTHO05D005614 6.9e-31 137.9 92 72.8
HPP92_017314 Vanilla planifolia HOM05D004714 ORTHO05D005614 6.9e-31 137.9 101 68.3
Zm00001eb362110 Zea mays HOM05D004714 ORTHO05D005614 6.9e-31 137.9 99 67.7
THA.LOC104802911 Tarenaya hassleriana HOM05D004714 ORTHO05D005614 9.0e-31 137.5 99 70.7
arahy.Tifrunner.gnm1.ann1.ZK581Z Arachis hypogaea HOM05D004714 ORTHO05D005614 1.2e-30 137.1 99 67.7
BcaC03g14165 Brassica carinata HOM05D004714 ORTHO05D005614 1.2e-30 137.1 102 67.6
Carub.0008s1781 Capsella rubella HOM05D004714 ORTHO05D005614 1.2e-30 137.1 99 71.7
TPR.G38676 Trifolium pratense HOM05D004714 ORTHO05D005614 1.2e-30 137.1 99 66.7
arahy.Tifrunner.gnm1.ann1.72XQC0 Arachis hypogaea HOM05D004714 ORTHO05D005614 2.0e-30 136.3 99 67.7
C02p14380 Brassica napus HOM05D004714 ORTHO05D005614 2.0e-30 136.3 97 70.1
BolC2t07562H Brassica oleracea HOM05D004714 ORTHO05D005614 2.0e-30 136.3 97 70.1
Phvul.010G157500 Phaseolus vulgaris HOM05D004714 ORTHO05D005614 2.0e-30 136.3 99 66.7
Zm00001eb398140 Zea mays HOM05D004714 ORTHO05D005614 3.4e-30 135.6 99 66.7
BcaB05g22335 Brassica carinata HOM05D004714 ORTHO05D005614 8.5e-29 131.0 94 70.2
SEGI_34543 Sequoiadendron giganteum HOM05D004714 ORTHO05D005614 1.4e-28 130.2 100 63.0
Duzib168G1985 Durio zibethinus HOM05D004714 ORTHO05D005614 7.2e-28 127.9 104 64.4
Thecc.09G241900 Theobroma cacao HOM05D004714 ORTHO05D005614 9.3e-28 127.5 101 65.3
CDE02G3847 Ceratophyllum demersum HOM05D004714 ORTHO05D005614 3.6e-27 125.6 99 60.6
AagrBONN_evm.TU.Sc2ySwM_117.468 Anthoceros agrestis HOM05D004714 ORTHO05D005614 3.3e-25 119.0 101 57.4
Mapoly0052s0093 Marchantia polymorpha HOM05D004714 ORTHO05D005614 1.7e-24 116.7 99 60.6
Pp3c3_21690 Physcomitrium patens HOM05D004714 ORTHO05D005614 4.8e-24 115.2 77 67.5
SHI02880 Sapria himalayana HOM05D004714 ORTHO05D005614 6.3e-24 114.8 76 69.7
Oeu015328.1 Olea europaea HOM05D004714 ORTHO05D005614 8.2e-24 114.4 65 83.1
SMO115G0141 Selaginella moellendorffii HOM05D004714 ORTHO05D005614 2.2e-21 106.3 121 49.6
A02p08610 Brassica napus HOM05D004714 ORTHO05D005614 2.7e-19 99.4 75 65.3
Dinv25435 Davidia involucrata HOM05D004714 ORTHO05D005614 1.4e-18 97.1 104 53.8
CBR_g3967 Chara braunii HOM05D004714 ORTHO05D005614 5.7e-17 91.7 75 57.3
RcHm_v2.0_Chr4g0400661 Rosa chinensis HOM05D004714 ORTHO05D005614 7.7e-14 81.3 57 64.9
COL.COLO4_25457 Corchorus olitorius HOM05D004714 ORTHO05D005614 1.0e-13 80.9 51 76.5
DCAR_003032 Daucus carota HOM05D004714 ORTHO05D005614 2.9e-13 79.3 51 74.5
SGA_v2.0_scaffold905G53712 Striga asiatica HOM05D004714 ORTHO05D005614 4.2e-12 75.5 49 69.4
BraA02t05930Z Brassica rapa HOM05D004714 ORTHO05D005614 2.1e-11 73.2 67 58.2
Zm00001eb302180 Zea mays HOM05D004714 ORTHO05D005614 2.1e-11 73.2 48 66.7
PRCOL_00006789 Prasinoderma coloniale HOM05D004714 ORTHO05D005614 8.0e-11 71.2 72 52.8
Cre05.g245450 Chlamydomonas reinhardtii HOM05D004714 ORTHO05D005614 5.2e-10 68.6 74 50.0
Haze_26398 Corylus avellana HOM05D004714 ORTHO05D005614 4.8e-08 62.0 76 42.1
MSTRG.2407 Avicennia marina HOM05D005748 ORTHO05D007123 2.0e-06 56.6 73 34.2


User provided reference genes

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