Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022680 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.3e-117 426.4 221 100.0
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.5e-105 386.3 210 96.7
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.5e-105 386.3 210 96.7
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 1.2e-89 333.6 210 81.0
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 2.9e-88 328.9 223 77.1
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 7.2e-87 324.3 210 78.6
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 9.3e-87 323.9 210 79.0
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 1.6e-86 323.2 210 78.6
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 1.3e-85 320.1 210 77.1
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 1.1e-84 317.0 208 76.9
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 1.1e-82 310.5 210 74.3
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 9.0e-82 307.4 209 74.6
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 1.2e-81 307.0 214 72.4
CSS0005213 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.4e-81 305.4 166 95.8
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 5.9e-81 304.7 207 74.9
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 5.9e-81 304.7 209 73.7
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 5.9e-81 304.7 209 73.7
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 2.9e-80 302.4 208 72.6
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 8.5e-80 300.8 209 72.2
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 1.1e-79 300.4 210 73.3
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 2.5e-79 299.3 210 71.9
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 2.5e-79 299.3 210 72.9
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 4.2e-79 298.5 210 71.9
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 1.6e-78 296.6 209 70.8
Oeu017507.1 Olea europaea HOM05D002209 ORTHO05D004761 1.6e-78 296.6 211 71.1
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 2.1e-78 296.2 210 71.0
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 1.5e-76 290.0 211 70.1
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 2.0e-76 289.7 209 71.8
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 2.0e-76 289.7 210 70.0
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 4.3e-76 288.5 210 69.5
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 5.7e-76 288.1 211 69.7
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 7.4e-76 287.7 210 70.0
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 9.7e-76 287.3 217 67.7
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 9.7e-76 287.3 217 67.7
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 9.7e-76 287.3 210 69.0
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 1.3e-75 287.0 210 69.0
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 1.7e-75 286.6 210 69.0
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 6.3e-75 284.6 228 65.8
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.8e-74 283.1 210 69.5
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 2.4e-74 282.7 210 66.7
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 1.5e-73 280.0 209 67.5
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 1.5e-73 280.0 210 66.2
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 2.6e-73 279.3 209 71.3
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 1.7e-72 276.6 209 66.5
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 1.7e-72 276.6 208 67.3
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 2.2e-72 276.2 209 66.5
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 2.2e-72 276.2 208 67.3
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 6.5e-72 274.6 209 69.4
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 6.5e-72 274.6 207 65.7
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 1.9e-71 273.1 210 67.1
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 4.2e-71 271.9 208 68.8
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 4.2e-71 271.9 209 67.9
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 4.2e-71 271.9 210 64.8
Sopen12g020100 Solanum pennellii HOM05D002209 ORTHO05D004761 7.2e-71 271.2 210 64.3
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 9.4e-71 270.8 213 65.3
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 9.4e-71 270.8 209 65.1
Solyc12g040500.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 9.4e-71 270.8 210 64.3
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 1.6e-70 270.0 209 67.0
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 2.1e-70 269.6 210 65.7
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 2.7e-70 269.2 208 67.3
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 2.7e-70 269.2 210 62.9
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 3.6e-70 268.9 208 65.9
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 3.6e-70 268.9 208 65.4
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 3.6e-70 268.9 209 65.1
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 4.7e-70 268.5 210 66.2
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 4.7e-70 268.5 210 68.1
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.0e-69 267.3 209 67.9
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 2.3e-69 266.2 208 64.9
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 2.3e-69 266.2 208 65.9
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 2.3e-69 266.2 210 62.9
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 3.0e-69 265.8 170 83.5
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 3.0e-69 265.8 209 67.5
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 3.9e-69 265.4 210 64.3
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 5.2e-69 265.0 210 63.8
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 6.7e-69 264.6 208 66.3
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 8.8e-69 264.2 209 67.0
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 8.8e-69 264.2 208 65.4
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 1.1e-68 263.8 210 63.8
FAN04G3108 Fragaria x ananassa HOM05D002209 ORTHO05D004761 2.6e-68 262.7 210 66.7
CSS0012524 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.3e-68 262.3 167 81.4
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 4.4e-68 261.9 209 66.5
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 7.4e-68 261.2 209 65.1
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 1.3e-67 260.4 209 66.0
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 3.7e-67 258.8 217 61.3
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 4.8e-67 258.5 208 63.9
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 4.8e-67 258.5 211 63.5
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 6.3e-67 258.1 209 63.6
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 8.2e-67 257.7 210 60.5
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 1.4e-66 256.9 219 62.1
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 1.4e-66 256.9 210 61.9
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 1.8e-66 256.5 214 62.1
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 1.8e-66 256.5 210 59.5
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 1.8e-66 256.5 211 61.6
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 2.4e-66 256.1 208 64.9
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 4.1e-66 255.4 208 63.5
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 9.1e-66 254.2 210 61.9
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 1.2e-65 253.8 210 62.9
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 2.0e-65 253.1 210 61.9
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 2.0e-65 253.1 212 60.8
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 2.6e-65 252.7 211 63.5
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 2.6e-65 252.7 210 62.4
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 5.9e-65 251.5 208 63.5
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 7.7e-65 251.1 208 63.9
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 7.7e-65 251.1 209 64.6
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 7.7e-65 251.1 208 63.5
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 1.0e-64 250.8 208 63.5
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 1.0e-64 250.8 205 64.9
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 2.2e-64 249.6 209 64.1
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 2.2e-64 249.6 210 61.9
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 2.2e-64 249.6 210 61.9
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 2.2e-64 249.6 220 57.7
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 5.0e-64 248.4 208 63.0
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 5.0e-64 248.4 210 59.0
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 6.5e-64 248.1 209 64.1
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 6.5e-64 248.1 230 59.1
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 7.2e-63 244.6 206 60.7
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 9.4e-63 244.2 248 54.0
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 3.6e-62 242.3 208 59.6
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 2.3e-61 239.6 208 57.7
Gorai.007G186700 Gossypium raimondii HOM05D002209 ORTHO05D004761 2.6e-60 236.1 167 72.5
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 4.4e-60 235.3 215 57.2
Hma1.2p1_0669F.1_g200330 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 4.4e-60 235.3 167 70.7
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 7.5e-60 234.6 247 54.3
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 6.3e-59 231.5 244 53.3
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 8.2e-59 231.1 212 59.0
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 1.1e-58 230.7 243 55.1
Gohir.D08G140100 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.1e-58 230.7 167 71.3
Gorai.008G042300 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.8e-58 229.9 167 70.7
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 9.1e-58 227.6 178 66.9
Gorai.004G122400 Gossypium raimondii HOM05D002209 ORTHO05D004761 2.0e-57 226.5 170 70.0
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 7.2e-55 218.0 208 51.9
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 2.7e-54 216.1 209 55.0
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 6.1e-54 214.9 156 71.2
Gohir.D13G126266 Gossypium hirsutum HOM05D002209 ORTHO05D004761 8.0e-54 214.5 167 67.7
CSS0050298 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.3e-53 213.0 155 78.7
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 6.8e-53 211.5 156 73.1
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 5.7e-52 208.4 185 62.7
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 5.7e-52 208.4 324 40.7
PGSC0003DMG400015821 Solanum tuberosum HOM05D002209 ORTHO05D004761 5.4e-50 201.8 156 65.4
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 4.5e-49 198.7 346 37.9
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 5.9e-49 198.4 156 67.9
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 8.5e-48 194.5 156 64.7
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 5.2e-45 185.3 158 62.7
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 6.8e-45 184.9 317 38.2
CSS0034654 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 5.9e-41 171.8 113 81.4
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 7.7e-41 171.4 155 61.9
Gorai.008G062000 Gossypium raimondii HOM05D002209 ORTHO05D004761 2.9e-40 169.5 120 69.2
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 1.5e-39 167.2 139 63.3
CAN.G197.13 Capsicum annuum HOM05D002209 ORTHO05D004761 6.1e-38 161.8 119 64.7
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.8e-37 160.2 116 80.2
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 1.2e-30 137.5 211 36.5
SEGI_01637 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 8.0e-30 134.8 173 44.5
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 2.3e-29 133.3 155 45.2
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 3.1e-29 132.9 212 42.0
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 8.9e-29 131.3 211 37.0
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 1.5e-28 130.6 173 42.8
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 2.0e-28 130.2 211 37.0
Os09g0314300 Oryza sativa ssp. japonica HOM05D002209 ORTHO05D004761 2.9e-27 126.3 128 46.1
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 3.7e-27 125.9 209 34.9
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 1.1e-26 124.4 214 36.0
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 5.0e-24 115.5 214 33.2
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 9.5e-23 111.3 212 31.6
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 6.4e-19 98.6 155 41.9
CSS0038011 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 7.3e-15 85.1 45 91.1
CSS0040553 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 7.3e-15 85.1 45 91.1
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 6.2e-14 82.0 200 32.0
QL10p027517 Quercus lobata HOM05D002209 ORTHO05D004761 2.4e-10 70.1 43 72.1
unitig_0.g802 Utricularia gibba HOM05D002209 ORTHO05D004761 3.2e-10 69.7 43 72.1
AagrBONN_evm.TU.Sc2ySwM_368.2096 Anthoceros agrestis HOM05D002209 ORTHO05D004761 1.3e-08 64.3 151 31.8
arahy.Tifrunner.gnm1.ann1.C5B8HT Arachis hypogaea HOM05D002209 ORTHO05D004761 3.6e-06 56.2 44 56.8


User provided reference genes

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