Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022679 Camellia sinensis var. sinensis HOM05D004908 ORTHO05D006418 9.0e-190 666.8 337 100.0
Dinv17436 Davidia involucrata HOM05D004908 ORTHO05D006418 6.7e-137 491.1 343 72.3
Hma1.2p1_0060F.1_g032940 Hydrangea macrophylla HOM05D004908 ORTHO05D006418 1.2e-120 437.2 346 67.9
Rhsim08G0143800 Rhododendron simsii HOM05D004908 ORTHO05D006418 2.0e-120 436.4 379 63.3
GSVIVG01008119001 Vitis vinifera HOM05D004908 ORTHO05D006418 1.2e-117 427.2 336 65.5
MD14G1214000 Malus domestica HOM05D004908 ORTHO05D006418 8.0e-106 387.9 354 61.0
Prupe.5G207300 Prunus persica HOM05D004908 ORTHO05D006418 3.4e-104 382.5 351 59.8
TAR371G0785 Trochodendron aralioides HOM05D004908 ORTHO05D006418 1.9e-102 376.7 339 59.3
Thecc.03G001900 Theobroma cacao HOM05D004908 ORTHO05D006418 7.0e-102 374.8 344 58.7
Cfa019355 Carpinus fangiana HOM05D004908 ORTHO05D006418 8.6e-100 367.9 345 60.0
CiPaw.12G009100 Carya illinoinensis HOM05D004908 ORTHO05D006418 1.9e-99 366.7 346 57.8
Cc00_g03370 Coffea canephora HOM05D004908 ORTHO05D006418 3.4e-96 355.9 341 58.7
FvH4_5g13640 Fragaria vesca HOM05D004908 ORTHO05D006418 3.4e-96 355.9 349 55.6
QL10p019966 Quercus lobata HOM05D004908 ORTHO05D006418 9.8e-96 354.4 349 56.2
Haze_07746 Corylus avellana HOM05D004908 ORTHO05D006418 1.3e-95 354.0 374 55.3
CANSAT80G1354 Cannabis sativa HOM05D004908 ORTHO05D006418 3.7e-95 352.4 340 53.8
Hund02570 Selenicereus undatus HOM05D004908 ORTHO05D006418 3.7e-95 352.4 342 56.4
Nn4g23471 Nelumbo nucifera HOM05D004908 ORTHO05D006418 8.3e-95 351.3 340 57.1
RcHm_v2.0_Chr7g0183321 Rosa chinensis HOM05D004908 ORTHO05D006418 8.3e-95 351.3 343 56.6
Sed0013495 Sechium edule HOM05D004908 ORTHO05D006418 3.5e-93 345.9 287 63.4
Ciclev10021158m.g Citrus clementina HOM05D004908 ORTHO05D006418 7.8e-93 344.7 340 56.2
CsaV3_1G006120 Cucumis sativus L. HOM05D004908 ORTHO05D006418 2.3e-92 343.2 343 56.6
Duzib068G0428 Durio zibethinus HOM05D004908 ORTHO05D006418 6.6e-92 341.7 346 54.6
Manes.14G087300 Manihot esculenta HOM05D004908 ORTHO05D006418 6.6e-92 341.7 354 53.7
Gohir.A12G276800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.1e-91 340.9 345 56.2
Cpa.g.sc94.75 Carica papaya HOM05D004908 ORTHO05D006418 1.5e-91 340.5 347 53.9
Gorai.008G298500 Gossypium raimondii HOM05D004908 ORTHO05D006418 5.6e-91 338.6 347 55.6
Lsat_1_v5_gn_5_22901 Lactuca sativa HOM05D004908 ORTHO05D006418 5.6e-91 338.6 349 54.4
Oeu032097.2 Olea europaea HOM05D004908 ORTHO05D006418 7.3e-91 338.2 371 55.3
BolC5t30387H Brassica oleracea HOM05D004908 ORTHO05D006418 2.1e-90 336.7 318 57.5
Eucgr.B00624 Eucalyptus grandis HOM05D004908 ORTHO05D006418 4.7e-90 335.5 253 66.0
Potri.006G227300 Populus trichocarpa HOM05D004908 ORTHO05D006418 4.7e-90 335.5 341 55.4
HanXRQChr05g0153521 Helianthus annuus HOM05D004908 ORTHO05D006418 1.4e-89 334.0 317 55.5
AT1G18600 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 2.3e-89 333.2 329 56.8
BcaB07g31879 Brassica carinata HOM05D004908 ORTHO05D006418 2.3e-89 333.2 318 57.2
TWI81G0201 Tripterygium wilfordii HOM05D004908 ORTHO05D006418 2.3e-89 333.2 340 57.1
Aqoxy3G03654 Aquilegia oxysepala HOM05D004908 ORTHO05D006418 3.1e-89 332.8 330 53.3
A06p14680 Brassica napus HOM05D004908 ORTHO05D006418 3.1e-89 332.8 329 55.0
BraA06t24593Z Brassica rapa HOM05D004908 ORTHO05D006418 3.1e-89 332.8 329 55.0
AL1G31040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 5.2e-89 332.0 330 57.3
BcaC05g25755 Brassica carinata HOM05D004908 ORTHO05D006418 6.8e-89 331.6 327 56.3
C05p16860 Brassica napus HOM05D004908 ORTHO05D006418 6.8e-89 331.6 327 56.3
Peaxi162Scf01223g00009 Petunia axillaris HOM05D004908 ORTHO05D006418 1.2e-88 330.9 348 54.9
Prupe.5G207200 Prunus persica HOM05D004908 ORTHO05D006418 2.0e-88 330.1 345 52.2
ClCG04G011680 Citrullus lanatus HOM05D004908 ORTHO05D006418 3.4e-88 329.3 342 54.7
Lj9C439G11 Lonicera japonica HOM05D004908 ORTHO05D006418 5.8e-88 328.6 211 75.4
Carub.0001s1823 Capsella rubella HOM05D004908 ORTHO05D006418 7.6e-88 328.2 323 57.6
Atru.chr9.517 Acer truncatum HOM05D004908 ORTHO05D006418 1.3e-87 327.4 342 55.6
Sopen12g018880 Solanum pennellii HOM05D004908 ORTHO05D006418 1.7e-87 327.0 342 53.8
Thhalv10008142m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 2.9e-87 326.2 321 55.8
Gohir.D12G277800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 8.4e-87 324.7 273 61.2
Sabra06G0175900 Salix brachista HOM05D004908 ORTHO05D006418 8.4e-87 324.7 341 54.5
MSTRG.9592 Avicennia marina HOM05D004908 ORTHO05D006418 1.1e-86 324.3 339 53.4
AUR62039652 Chenopodium quinoa HOM05D004908 ORTHO05D006418 1.9e-86 323.6 340 54.4
CARHR019220 Cardamine hirsuta HOM05D004908 ORTHO05D006418 7.1e-86 321.6 318 55.0
Ah.11g047620 Amaranthus hybridus HOM05D004908 ORTHO05D006418 9.2e-86 321.2 303 56.1
Glyma.05G019500 Glycine max HOM05D004908 ORTHO05D006418 1.2e-85 320.9 343 54.2
Phvul.003G183300 Phaseolus vulgaris HOM05D004908 ORTHO05D006418 1.2e-85 320.9 330 54.8
Sp1g16570 Schrenkiella parvula HOM05D004908 ORTHO05D006418 1.0e-84 317.8 316 56.0
ECA246G3883 Erigeron canadensis HOM05D004908 ORTHO05D006418 5.1e-84 315.5 264 61.0
SGA_v2.0_scaffold51G18774 Striga asiatica HOM05D004908 ORTHO05D006418 7.3e-83 311.6 359 49.6
VMungo1215G2693 Vigna mungo HOM05D004908 ORTHO05D006418 6.2e-82 308.5 308 54.5
AUR62021531 Chenopodium quinoa HOM05D004908 ORTHO05D006418 8.1e-82 308.1 306 54.9
Nitab4.5_0001797g0080 Nicotiana tabacum HOM05D004908 ORTHO05D006418 8.9e-81 304.7 361 50.4
Aa31LG7G3360 Aethionema arabicum HOM05D004908 ORTHO05D006418 1.2e-80 304.3 335 51.3
THA.LOC104808039 Tarenaya hassleriana HOM05D004908 ORTHO05D006418 2.0e-80 303.5 299 56.5
Migut.D01626 Erythranthe guttata HOM05D004908 ORTHO05D006418 2.6e-80 303.1 317 53.6
MELO3C002041.2 Cucumis melo HOM05D004908 ORTHO05D006418 5.8e-80 302.0 313 56.9
Medtr4g109700 Medicago truncatula HOM05D004908 ORTHO05D006418 2.2e-79 300.1 323 51.7
Lalb_Chr07g0178341 Lupinus albus HOM05D004908 ORTHO05D006418 2.4e-78 296.6 313 54.6
EL10Ac5g11159 Beta vulgaris HOM05D004908 ORTHO05D006418 5.4e-78 295.4 211 69.2
arahy.Tifrunner.gnm1.ann1.J6BFMQ Arachis hypogaea HOM05D004908 ORTHO05D006418 1.2e-77 294.3 331 52.6
arahy.Tifrunner.gnm1.ann1.PAN20U Arachis hypogaea HOM05D004908 ORTHO05D006418 1.2e-77 294.3 331 52.6
TPR.G1983 Trifolium pratense HOM05D004908 ORTHO05D006418 2.5e-75 286.6 224 64.3
Lj4g0028183 Lotus japonicus HOM05D004908 ORTHO05D006418 3.3e-75 286.2 216 65.3
Manes.14G087101 Manihot esculenta HOM05D004908 ORTHO05D006418 4.8e-74 282.3 349 45.6
PSO478G4625 Papaver somniferum HOM05D004908 ORTHO05D006418 3.4e-72 276.2 263 55.5
FAN13G1921 Fragaria x ananassa HOM05D004908 ORTHO05D006418 5.8e-72 275.4 349 47.6
FAN08G1663 Fragaria x ananassa HOM05D004908 ORTHO05D006418 2.2e-71 273.5 349 47.6
Sc04g0004310 Simmondsia chinensis HOM05D004908 ORTHO05D006418 2.9e-71 273.1 279 53.4
vmacro17622 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 8.4e-71 271.6 217 70.5
unitig_699.g19027 Utricularia gibba HOM05D004908 ORTHO05D006418 1.9e-70 270.4 208 63.5
Nitab4.5_0006506g0020 Nicotiana tabacum HOM05D004908 ORTHO05D006418 2.4e-70 270.0 213 64.3
MBI16_g10851_MAGBIO Magnolia biondii HOM05D004908 ORTHO05D006418 3.9e-68 262.7 344 45.9
DCAR_011562 Daucus carota HOM05D004908 ORTHO05D006418 6.6e-68 261.9 309 49.5
Duzib205G0531 Durio zibethinus HOM05D004908 ORTHO05D006418 1.9e-67 260.4 211 59.2
SHI17490 Sapria himalayana HOM05D004908 ORTHO05D006418 7.4e-67 258.5 207 63.8
CDE07G0469 Ceratophyllum demersum HOM05D004908 ORTHO05D006418 2.8e-66 256.5 278 47.5
FAN13G3071 Fragaria x ananassa HOM05D004908 ORTHO05D006418 4.8e-66 255.8 297 50.5
FAN08G0411 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.1e-65 254.6 336 48.5
SalBow7G1843 Salvia bowleyana HOM05D004908 ORTHO05D006418 5.3e-65 252.3 329 44.4
FAN18G1888 Fragaria x ananassa HOM05D004908 ORTHO05D006418 2.0e-64 250.4 346 45.7
Actinidia04812 Actinidia chinensis HOM05D004908 ORTHO05D006418 2.6e-64 250.0 210 63.3
PSO017G5063 Papaver somniferum HOM05D004908 ORTHO05D006418 2.1e-61 240.4 206 61.2
PSO017G6704 Papaver somniferum HOM05D004908 ORTHO05D006418 2.7e-61 240.0 206 60.7
PGR083G2541 Punica granatum HOM05D004908 ORTHO05D006418 6.0e-61 238.8 276 47.1
Os01g0763100 Oryza sativa ssp. japonica HOM05D004908 ORTHO05D006418 3.3e-59 233.0 208 55.3
FAN13G1644 Fragaria x ananassa HOM05D004908 ORTHO05D006418 6.5e-55 218.8 206 58.7
HPP92_019201 Vanilla planifolia HOM05D004908 ORTHO05D006418 2.1e-53 213.8 209 51.2
AL2G34040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 8.7e-52 208.4 276 43.5
ATR0827G189 Amborella trichopoda HOM05D004908 ORTHO05D006418 1.5e-51 207.6 195 56.4
PSO017G2617 Papaver somniferum HOM05D004908 ORTHO05D006418 4.3e-51 206.1 222 50.5
Prupe.3G124800 Prunus persica HOM05D004908 ORTHO05D006418 2.1e-50 203.8 355 39.7
AT1G74130 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 4.8e-50 202.6 278 41.7
CARHR067290 Cardamine hirsuta HOM05D004908 ORTHO05D006418 9.0e-49 198.4 304 40.8
SalBow7G0217 Salvia bowleyana HOM05D004908 ORTHO05D006418 3.4e-48 196.4 227 48.9
Pp3c22_7870 Physcomitrium patens HOM05D004908 ORTHO05D006418 1.0e-47 194.9 198 50.0
Carub.0002s2094 Capsella rubella HOM05D004908 ORTHO05D006418 2.2e-47 193.7 278 42.4
FvH4_5g13620 Fragaria vesca HOM05D004908 ORTHO05D006418 8.4e-47 191.8 161 60.9
Zm00001eb370410 Zea mays HOM05D004908 ORTHO05D006418 5.5e-46 189.1 180 53.3
Gohir.D10G255500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 9.3e-46 188.3 133 71.4
SalBow7G4422 Salvia bowleyana HOM05D004908 ORTHO05D006418 1.6e-45 187.6 348 36.8
BraA07t31547Z Brassica rapa HOM05D003320 ORTHO05D003941 4.6e-45 186.0 291 37.8
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 2.3e-44 183.7 279 40.1
Psat0s3566g0040 Pisum sativum HOM05D004908 ORTHO05D006418 1.9e-43 180.6 234 44.0
Thhalv10019561m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 7.4e-43 178.7 307 39.1
BcaC08g46817 Brassica carinata HOM05D004908 ORTHO05D006418 9.7e-43 178.3 320 36.2
Solyc12g038600.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 9.7e-43 178.3 133 66.9
RcHm_v2.0_Chr1g0346931 Rosa chinensis HOM05D004908 ORTHO05D006418 1.3e-42 177.9 123 74.8
Carub.0002s2095 Capsella rubella HOM05D004908 ORTHO05D006418 2.2e-42 177.2 249 43.0
Actinidia13428 Actinidia chinensis HOM05D004908 ORTHO05D006418 3.7e-42 176.4 101 88.1
AagrBONN_evm.TU.Sc2ySwM_368.1628 Anthoceros agrestis HOM05D004908 ORTHO05D006418 3.1e-41 173.3 210 44.8
Mapoly0086s0048 Marchantia polymorpha HOM05D004908 ORTHO05D006418 1.2e-40 171.4 198 48.0
BolC6t39860H Brassica oleracea HOM05D004908 ORTHO05D006418 4.5e-40 169.5 232 39.2
SalBow7G4769 Salvia bowleyana HOM05D004908 ORTHO05D006418 1.7e-39 167.5 351 37.3
Glyma.17G080300 Glycine max HOM05D004908 ORTHO05D006418 7.2e-38 162.2 172 54.7
BcaC08g46813 Brassica carinata HOM05D004908 ORTHO05D006418 2.1e-37 160.6 232 38.4
C06p48280 Brassica napus HOM05D004908 ORTHO05D006418 2.7e-37 160.2 198 40.4
C06p48290 Brassica napus HOM05D003320 ORTHO05D003941 3.9e-36 156.4 293 36.2
Solyc12g038590.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 1.1e-35 154.8 218 45.0
vmacro17623 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 1.1e-35 154.8 93 83.9
AT1G74140 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 1.5e-35 154.5 303 36.0
BcaC08g46846 Brassica carinata HOM05D003320 ORTHO05D003941 2.5e-35 153.7 277 37.9
MCO07G692 Micromonas commoda HOM05D004908 ORTHO05D006418 9.7e-35 151.8 221 39.4
SEGI_05482 Sequoiadendron giganteum HOM05D004908 ORTHO05D006418 1.7e-34 151.0 143 56.6
RcHm_v2.0_Chr6g0258631 Rosa chinensis HOM05D004908 ORTHO05D006418 3.8e-31 139.8 121 58.7
RcHm_v2.0_Chr7g0183341 Rosa chinensis HOM05D004908 ORTHO05D006418 5.1e-28 129.4 116 52.6
Gohir.A06G087200 Gossypium hirsutum HOM05D004908 ORTHO05D006418 4.1e-25 119.8 73 72.6
RcHm_v2.0_Chr6g0258651 Rosa chinensis HOM05D004908 ORTHO05D006418 4.1e-25 119.8 75 81.3
HPP92_019191 Vanilla planifolia HOM05D004908 ORTHO05D006418 4.1e-25 119.8 115 50.4
RcHm_v2.0_Chr1g0346941 Rosa chinensis HOM05D004908 ORTHO05D006418 3.0e-20 103.6 70 64.3
Dinv17434 Davidia involucrata HOM05D004908 ORTHO05D006418 9.7e-19 98.6 88 63.6
BolC6t39863H Brassica oleracea HOM05D004908 ORTHO05D039080 2.2e-18 97.4 294 33.0
CBR_g24070 Chara braunii HOM05D000019 ORTHO05D000002 2.0e-16 90.9 107 38.3
FvH4_5g13610 Fragaria vesca HOM05D004908 ORTHO05D006418 1.3e-15 88.2 73 65.8
BcaC08g46819 Brassica carinata HOM05D004908 ORTHO05D039080 9.4e-14 82.0 220 31.8
Gohir.A07G149500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 4.8e-10 69.7 43 69.8
RcHm_v2.0_Chr6g0263661 Rosa chinensis HOM05D004908 ORTHO05D006418 4.2e-06 56.6 41 58.5


User provided reference genes

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