Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022675 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 2.3e-111 405.6 210 100.0
CSS0026672 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 5.1e-74 281.6 184 86.4
Peaxi162Scf00126g00003 Petunia axillaris HOM05D006283 ORTHO05D007727 2.0e-14 83.6 47 78.7
Peaxi162Scf00126g00015 Petunia axillaris HOM05D006283 ORTHO05D007727 2.3e-10 70.1 96 43.8
TAR362G0864 Trochodendron aralioides HOM05D006283 ORTHO05D007727 3.0e-10 69.7 78 50.0
Atru.chr3.1494 Acer truncatum HOM05D006283 ORTHO05D007727 6.7e-10 68.6 77 50.6
Nitab4.5_0000130g0340 Nicotiana tabacum HOM05D006283 ORTHO05D007727 6.7e-10 68.6 96 41.7
Lsat_1_v5_gn_4_30241 Lactuca sativa HOM05D006283 ORTHO05D007727 1.5e-09 67.4 78 46.2
COL.COLO4_07661 Corchorus olitorius HOM05D006283 ORTHO05D007727 2.0e-09 67.0 74 52.7
Lj3A196T13 Lonicera japonica HOM05D006283 ORTHO05D007727 2.0e-09 67.0 34 91.2
Oeu034461.3 Olea europaea HOM05D006283 ORTHO05D007727 2.0e-09 67.0 76 50.0
CAN.G1247.5 Capsicum annuum HOM05D006283 ORTHO05D007727 2.6e-09 66.6 97 40.2
Dinv22729 Davidia involucrata HOM05D006283 ORTHO05D007727 2.6e-09 66.6 78 48.7
Hma1.2p1_0639F.1_g194055 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 3.3e-09 66.2 96 40.6
Hma1.2p1_0847F.1_g227833 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 3.3e-09 66.2 77 48.1
Hma1.2p1_0847F.1_g227840 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 3.3e-09 66.2 96 40.6
Gohir.A10G137000 Gossypium hirsutum HOM05D006283 ORTHO05D007727 4.4e-09 65.9 79 48.1
Gohir.D10G129700 Gossypium hirsutum HOM05D006283 ORTHO05D007727 5.7e-09 65.5 74 50.0
Gorai.011G143000 Gossypium raimondii HOM05D006283 ORTHO05D007727 5.7e-09 65.5 74 50.0
QL10p048749 Quercus lobata HOM05D006283 ORTHO05D007727 5.7e-09 65.5 78 47.4
PGSC0003DMG400030791 Solanum tuberosum HOM05D006283 ORTHO05D007727 7.4e-09 65.1 98 40.8
Duzib151G0050 Durio zibethinus HOM05D006283 ORTHO05D007727 9.7e-09 64.7 74 50.0
Migut.N02075 Erythranthe guttata HOM05D006283 ORTHO05D007727 9.7e-09 64.7 74 50.0
PGR142G0689 Punica granatum HOM05D006283 ORTHO05D007727 9.7e-09 64.7 96 42.7
Rhsim09G0027900 Rhododendron simsii HOM05D006283 ORTHO05D007727 9.7e-09 64.7 124 38.7
Solyc06g054450.3 Solanum lycopersicum HOM05D006283 ORTHO05D007727 9.7e-09 64.7 73 46.6
Sopen06g019520 Solanum pennellii HOM05D006283 ORTHO05D007727 9.7e-09 64.7 73 46.6
Thecc.04G180000 Theobroma cacao HOM05D006283 ORTHO05D007727 9.7e-09 64.7 101 44.6
Actinidia35975 Actinidia chinensis HOM05D006283 ORTHO05D007727 1.3e-08 64.3 78 48.7
arahy.Tifrunner.gnm1.ann1.7GR0QN Arachis hypogaea HOM05D006283 ORTHO05D007727 1.3e-08 64.3 126 33.3
arahy.Tifrunner.gnm1.ann1.9EYB94 Arachis hypogaea HOM05D006283 ORTHO05D007727 1.3e-08 64.3 98 37.8
Cc03_g13090 Coffea canephora HOM05D006283 ORTHO05D007727 1.3e-08 64.3 78 46.2
Prupe.1G192800 Prunus persica HOM05D006283 ORTHO05D007727 1.3e-08 64.3 74 48.6
SGA_v2.0_scaffold12G06158 Striga asiatica HOM05D006283 ORTHO05D007727 1.3e-08 64.3 72 47.2
Duzib268G1109 Durio zibethinus HOM05D006283 ORTHO05D007727 1.7e-08 63.9 74 48.6
GSVIVG01010753001 Vitis vinifera HOM05D006283 ORTHO05D007727 1.7e-08 63.9 31 93.5
Haze_01514 Corylus avellana HOM05D006283 ORTHO05D007727 2.2e-08 63.5 31 90.3
vmacro00624 Vaccinium macrocarpon HOM05D006283 ORTHO05D007727 2.2e-08 63.5 71 53.5
ECA234G3618 Erigeron canadensis HOM05D006283 ORTHO05D007727 3.7e-08 62.8 78 43.6
Potri.019G051300 Populus trichocarpa HOM05D006283 ORTHO05D007727 3.7e-08 62.8 74 47.3
Lj3g0020373 Lotus japonicus HOM05D006283 ORTHO05D007727 4.8e-08 62.4 79 44.3
HanXRQChr16g0525531 Helianthus annuus HOM05D006283 ORTHO05D007727 6.3e-08 62.0 78 42.3
Manes.11G120300 Manihot esculenta HOM05D006283 ORTHO05D007727 6.3e-08 62.0 88 44.3
CiPaw.02G054900 Carya illinoinensis HOM05D006283 ORTHO05D007727 8.2e-08 61.6 77 46.8
Eucgr.H00372 Eucalyptus grandis HOM05D006283 ORTHO05D007727 8.2e-08 61.6 96 41.7
Nn1g09881 Nelumbo nucifera HOM05D006283 ORTHO05D007727 8.2e-08 61.6 107 37.4
ATR0824G015 Amborella trichopoda HOM05D006283 ORTHO05D007727 1.1e-07 61.2 78 43.6
CARHR169780 Cardamine hirsuta HOM05D006283 ORTHO05D007727 1.1e-07 61.2 31 83.9
CDE08G0087 Ceratophyllum demersum HOM05D006283 ORTHO05D007727 1.1e-07 61.2 80 43.8
Ca_20784_v3 Cicer arietinum L. HOM05D006283 ORTHO05D007727 1.1e-07 61.2 91 44.0
FvH4_4g10770 Fragaria vesca HOM05D006283 ORTHO05D007727 1.1e-07 61.2 88 39.8
FAN12G2405 Fragaria x ananassa HOM05D006283 ORTHO05D007727 1.1e-07 61.2 88 39.8
Glyma.11G127900 Glycine max HOM05D006283 ORTHO05D007727 1.1e-07 61.2 102 39.2
Sabra19G0057300 Salix brachista HOM05D006283 ORTHO05D007727 1.1e-07 61.2 74 45.9
Sp5g03750 Schrenkiella parvula HOM05D006283 ORTHO05D007727 1.1e-07 61.2 31 83.9
Sc13g0006800 Simmondsia chinensis HOM05D006283 ORTHO05D007727 1.1e-07 61.2 79 41.8
TWI15G0224 Tripterygium wilfordii HOM05D006283 ORTHO05D007727 1.1e-07 61.2 74 44.6
TWI15G1054 Tripterygium wilfordii HOM05D006283 ORTHO05D007727 1.1e-07 61.2 74 44.6
Actinidia34602 Actinidia chinensis HOM05D006283 ORTHO05D007727 1.4e-07 60.8 31 87.1
MD04G1040100 Malus domestica HOM05D006283 ORTHO05D007727 1.4e-07 60.8 31 87.1
Hund12011 Selenicereus undatus HOM05D006283 ORTHO05D007727 1.8e-07 60.5 31 87.1
BcaC08g44981 Brassica carinata HOM05D006283 ORTHO05D007727 2.4e-07 60.1 74 44.6
C06p26110 Brassica napus HOM05D006283 ORTHO05D007727 2.4e-07 60.1 74 44.6
BolC6t37776H Brassica oleracea HOM05D006283 ORTHO05D007727 2.4e-07 60.1 74 44.6
AUR62015391 Chenopodium quinoa HOM05D006283 ORTHO05D007727 2.4e-07 60.1 79 40.5
Lalb_Chr01g0003171 Lupinus albus HOM05D006283 ORTHO05D007727 2.4e-07 60.1 96 37.5
THA.LOC104803704 Tarenaya hassleriana HOM05D006283 ORTHO05D007727 2.4e-07 60.1 74 44.6
ClCG07G015660 Citrullus lanatus HOM05D006283 ORTHO05D007727 3.1e-07 59.7 35 71.4
RcHm_v2.0_Chr4g0406391 Rosa chinensis HOM05D006283 ORTHO05D007727 3.1e-07 59.7 74 44.6
DCAR_029916 Daucus carota HOM05D006283 ORTHO05D007727 4.1e-07 59.3 78 42.3
FAN07G2518 Fragaria x ananassa HOM05D006283 ORTHO05D007727 4.1e-07 59.3 31 83.9
SalBow3G2028 Salvia bowleyana HOM05D006283 ORTHO05D007727 4.1e-07 59.3 93 37.6
Aa31LG10G13740 Aethionema arabicum HOM05D006283 ORTHO05D007727 5.3e-07 58.9 74 44.6
MSTRG.9766 Avicennia marina HOM05D006283 ORTHO05D007727 5.3e-07 58.9 74 43.2
TPR.G34200 Trifolium pratense HOM05D006283 ORTHO05D007727 5.3e-07 58.9 75 45.3
CANSAT78G1066 Cannabis sativa HOM05D006283 ORTHO05D007727 7.0e-07 58.5 75 42.7
Thhalv10006168m.g Eutrema salsugineum HOM05D006283 ORTHO05D007727 7.0e-07 58.5 87 39.1
Lalb_Chr03g0026141 Lupinus albus HOM05D006283 ORTHO05D007727 7.0e-07 58.5 123 34.1
RcHm_v2.0_Chr4g0406821 Rosa chinensis HOM05D006283 ORTHO05D007727 7.0e-07 58.5 32 78.1
A07p24630 Brassica napus HOM05D006283 ORTHO05D007727 9.1e-07 58.2 87 39.1
BraA07t30108Z Brassica rapa HOM05D006283 ORTHO05D007727 9.1e-07 58.2 87 39.1
Ciclev10021635m.g Citrus clementina HOM05D006283 ORTHO05D007727 9.1e-07 58.2 31 80.6
MELO3C017715.2 Cucumis melo HOM05D006283 ORTHO05D007727 9.1e-07 58.2 74 44.6
CsaV3_4G003450 Cucumis sativus L. HOM05D006283 ORTHO05D007727 9.1e-07 58.2 74 44.6
PSO017G4585 Papaver somniferum HOM05D006283 ORTHO05D007727 9.1e-07 58.2 79 41.8
PSO675G6362 Papaver somniferum HOM05D006283 ORTHO05D007727 9.1e-07 58.2 79 41.8
VMungo1127G0333 Vigna mungo HOM05D006283 ORTHO05D007727 9.1e-07 58.2 75 42.7
Phvul.011G054600 Phaseolus vulgaris HOM05D006283 ORTHO05D007727 1.2e-06 57.8 74 43.2
HPP92_009172 Vanilla planifolia HOM05D006283 ORTHO05D007727 1.5e-06 57.4 33 72.7
Aqoxy2G04092 Aquilegia oxysepala HOM05D006283 ORTHO05D007727 2.0e-06 57.0 77 42.9
EL10Ac3g05930 Beta vulgaris HOM05D006283 ORTHO05D007727 2.0e-06 57.0 79 39.2
Medtr4g067140 Medicago truncatula HOM05D006283 ORTHO05D007727 2.0e-06 57.0 73 45.2
AL5G41290 Arabidopsis lyrata HOM05D006283 ORTHO05D007727 2.6e-06 56.6 87 37.9
AT3G59390 Arabidopsis thaliana HOM05D006283 ORTHO05D007727 2.6e-06 56.6 87 37.9
BcaB02g07471 Brassica carinata HOM05D006283 ORTHO05D007727 2.6e-06 56.6 87 37.9
Ah.07g201980 Amaranthus hybridus HOM05D006283 ORTHO05D007727 5.9e-06 55.5 31 74.2


User provided reference genes

Program Settings