Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022673 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 4.9e-69 264.2 124 100.0
A07p39380 Brassica napus HOM05D003653 ORTHO05D004249 5.0e-21 104.8 50 96.0
C06p47610 Brassica napus HOM05D003653 ORTHO05D004249 5.0e-21 104.8 50 96.0
BolC6t39799H Brassica oleracea HOM05D003653 ORTHO05D004249 5.0e-21 104.8 50 96.0
BraA07t31487Z Brassica rapa HOM05D003653 ORTHO05D004249 5.0e-21 104.8 50 96.0
TWI32G0371 Tripterygium wilfordii HOM05D003653 ORTHO05D004249 5.0e-21 104.8 51 94.1
Nn8g38522 Nelumbo nucifera HOM05D003653 ORTHO05D004249 6.5e-21 104.4 50 96.0
Potri.010G138900 Populus trichocarpa HOM05D003653 ORTHO05D004249 1.1e-20 103.6 50 90.0
GSVIVG01015003001 Vitis vinifera HOM05D003653 ORTHO05D004249 1.1e-20 103.6 51 94.1
Cpa.g.sc82.47 Carica papaya HOM05D003653 ORTHO05D004249 1.5e-20 103.2 50 94.0
AL2G33210 Arabidopsis lyrata HOM05D003653 ORTHO05D004249 1.9e-20 102.8 50 94.0
CANSAT56G3945 Cannabis sativa HOM05D003653 ORTHO05D004249 1.9e-20 102.8 51 90.2
Carub.0001s3831 Capsella rubella HOM05D003653 ORTHO05D004249 1.9e-20 102.8 50 94.0
Carub.0002s2017 Capsella rubella HOM05D003653 ORTHO05D004249 1.9e-20 102.8 50 94.0
Thhalv10018146m.g Eutrema salsugineum HOM05D003653 ORTHO05D004249 1.9e-20 102.8 50 94.0
Sp5g28630 Schrenkiella parvula HOM05D003653 ORTHO05D004249 1.9e-20 102.8 50 94.0
ATR0099G047 Amborella trichopoda HOM05D003653 ORTHO05D004249 2.5e-20 102.4 51 88.2
PSO135G0095 Papaver somniferum HOM05D003653 ORTHO05D004249 2.5e-20 102.4 51 90.2
Actinidia05573 Actinidia chinensis HOM05D003653 ORTHO05D004249 4.2e-20 101.7 51 92.2
COL.COLO4_21195 Corchorus olitorius HOM05D003653 ORTHO05D004249 5.5e-20 101.3 51 90.2
Dinv11396 Davidia involucrata HOM05D003653 ORTHO05D004249 5.5e-20 101.3 51 90.2
Aqoxy4G00013 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 7.2e-20 100.9 50 90.0
PSO541G4412 Papaver somniferum HOM05D003653 ORTHO05D004249 7.2e-20 100.9 51 88.2
PSO724G1082 Papaver somniferum HOM05D003653 ORTHO05D004249 7.2e-20 100.9 51 88.2
Sabra10G0107200 Salix brachista HOM05D003653 ORTHO05D004249 9.4e-20 100.5 49 87.8
Aqoxy1G02116 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 1.2e-19 100.1 50 90.0
Aqoxy7G04180 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 1.2e-19 100.1 50 90.0
BcaNung06460 Brassica carinata HOM05D003653 ORTHO05D004249 1.2e-19 100.1 49 91.8
Rhsim06G0154000 Rhododendron simsii HOM05D003653 ORTHO05D004249 1.2e-19 100.1 50 90.0
VMungo1215G1873 Vigna mungo HOM05D003653 ORTHO05D004249 1.2e-19 100.1 51 90.2
AT1G73430 Arabidopsis thaliana HOM05D003653 ORTHO05D004249 1.6e-19 99.8 50 92.0
CARHR066480 Cardamine hirsuta HOM05D003653 ORTHO05D004249 1.6e-19 99.8 50 92.0
PSO675G3146 Papaver somniferum HOM05D003653 ORTHO05D004249 1.6e-19 99.8 51 88.2
QL02p096254 Quercus lobata HOM05D003653 ORTHO05D004249 2.1e-19 99.4 51 90.2
QL02p096361 Quercus lobata HOM05D003653 ORTHO05D004249 2.1e-19 99.4 51 90.2
THA.LOC104812181 Tarenaya hassleriana HOM05D003653 ORTHO05D004249 2.1e-19 99.4 49 93.9
Ciclev10007512m.g Citrus clementina HOM05D003653 ORTHO05D004249 2.7e-19 99.0 51 86.3
Lalb_Chr13g0299181 Lupinus albus HOM05D003653 ORTHO05D004249 2.7e-19 99.0 51 86.3
vmacro03339 Vaccinium macrocarpon HOM05D003653 ORTHO05D004249 2.7e-19 99.0 50 92.0
Glyma.17G045100 Glycine max HOM05D003653 ORTHO05D004249 3.6e-19 98.6 50 88.0
Glyma.13G114900 Glycine max HOM05D003653 ORTHO05D004249 4.7e-19 98.2 51 86.3
CDE08G1372 Ceratophyllum demersum HOM05D003653 ORTHO05D004249 6.1e-19 97.8 49 89.8
Sc18g0002910 Simmondsia chinensis HOM05D003653 ORTHO05D004249 6.1e-19 97.8 50 90.0
Manes.03G045400 Manihot esculenta HOM05D003653 ORTHO05D004249 8.0e-19 97.4 50 88.0
Ah.09g228870 Amaranthus hybridus HOM05D003653 ORTHO05D004249 1.0e-18 97.1 51 88.2
Duzib187G0285 Durio zibethinus HOM05D003653 ORTHO05D004249 1.0e-18 97.1 51 88.2
Hma1.2p1_0179F.1_g079140 Hydrangea macrophylla HOM05D003653 ORTHO05D004249 1.0e-18 97.1 51 86.3
Medtr4g124570 Medicago truncatula HOM05D003653 ORTHO05D004249 1.0e-18 97.1 51 88.2
Phvul.003G126900 Phaseolus vulgaris HOM05D003653 ORTHO05D004249 1.0e-18 97.1 51 88.2
Lj4C921G8 Lonicera japonica HOM05D003653 ORTHO05D004249 1.4e-18 96.7 52 88.5
MBI13_g01694_MAGBIO Magnolia biondii HOM05D003653 ORTHO05D004249 1.4e-18 96.7 50 90.0
arahy.Tifrunner.gnm1.ann1.H5KB4L Arachis hypogaea HOM05D003653 ORTHO05D004249 2.3e-18 95.9 51 84.3
MD02G1104000 Malus domestica HOM05D003653 ORTHO05D004249 2.3e-18 95.9 51 88.2
TPR.G12688 Trifolium pratense HOM05D003653 ORTHO05D004249 2.3e-18 95.9 51 86.3
arahy.Tifrunner.gnm1.ann1.LZJ3ZW Arachis hypogaea HOM05D003653 ORTHO05D004249 3.0e-18 95.5 50 84.0
Gohir.D06G081700 Gossypium hirsutum HOM05D003653 ORTHO05D004249 3.0e-18 95.5 51 86.3
Gorai.010G095200 Gossypium raimondii HOM05D003653 ORTHO05D004249 3.0e-18 95.5 51 86.3
Lj4g0027638 Lotus japonicus HOM05D003653 ORTHO05D004249 3.0e-18 95.5 51 84.3
Thecc.09G069200 Theobroma cacao HOM05D003653 ORTHO05D004249 3.0e-18 95.5 50 88.0
Eucgr.C00763 Eucalyptus grandis HOM05D003653 ORTHO05D004249 4.0e-18 95.1 50 84.0
Psat4g019560 Pisum sativum HOM05D003653 ORTHO05D004249 4.0e-18 95.1 51 86.3
Lj6C103G5 Lonicera japonica HOM05D003653 ORTHO05D004249 5.2e-18 94.7 51 88.2
Prupe.7G190900 Prunus persica HOM05D003653 ORTHO05D004249 5.2e-18 94.7 52 86.5
CiPaw.08G039100 Carya illinoinensis HOM05D003653 ORTHO05D004249 6.8e-18 94.4 51 88.2
FvH4_1g09540 Fragaria vesca HOM05D003653 ORTHO05D004249 6.8e-18 94.4 51 84.3
FAN19G0402 Fragaria x ananassa HOM05D003653 ORTHO05D004249 6.8e-18 94.4 51 84.3
FAN23G3130 Fragaria x ananassa HOM05D003653 ORTHO05D004249 6.8e-18 94.4 51 84.3
FAN26G0928 Fragaria x ananassa HOM05D003653 ORTHO05D004249 6.8e-18 94.4 51 84.3
FAN26G2747 Fragaria x ananassa HOM05D003653 ORTHO05D004249 6.8e-18 94.4 51 84.3
FAN28G1145 Fragaria x ananassa HOM05D003653 ORTHO05D004249 6.8e-18 94.4 51 84.3
Gohir.A06G084400 Gossypium hirsutum HOM05D003653 ORTHO05D004249 6.8e-18 94.4 51 84.3
RcHm_v2.0_Chr2g0096121 Rosa chinensis HOM05D003653 ORTHO05D004249 6.8e-18 94.4 51 84.3
RcHm_v2.0_Chr2g0096281 Rosa chinensis HOM05D003653 ORTHO05D004249 6.8e-18 94.4 51 84.3
MD15G1224400 Malus domestica HOM05D003653 ORTHO05D004249 8.8e-18 94.0 51 88.2
Cfa000655 Carpinus fangiana HOM05D003653 ORTHO05D004249 1.2e-17 93.6 51 86.3
Duzib150G1359 Durio zibethinus HOM05D003653 ORTHO05D004249 1.2e-17 93.6 50 86.0
CiPaw.07G188300 Carya illinoinensis HOM05D003653 ORTHO05D004249 1.5e-17 93.2 51 88.2
Manes.16G089600 Manihot esculenta HOM05D003653 ORTHO05D004249 1.5e-17 93.2 50 84.0
Oeu028863.2 Olea europaea HOM05D003653 ORTHO05D004249 2.0e-17 92.8 52 82.7
Migut.L01598 Erythranthe guttata HOM05D003653 ORTHO05D004249 2.6e-17 92.4 49 85.7
Haze_06172 Corylus avellana HOM05D003653 ORTHO05D004249 3.4e-17 92.0 51 84.3
SGA_v2.0_scaffold55G19872 Striga asiatica HOM05D003653 ORTHO05D004249 3.4e-17 92.0 49 83.7
unitig_8.g3535 Utricularia gibba HOM05D003653 ORTHO05D004249 3.4e-17 92.0 46 89.1
AUR62025332 Chenopodium quinoa HOM05D003653 ORTHO05D004249 4.4e-17 91.7 50 84.0
AUR62028329 Chenopodium quinoa HOM05D003653 ORTHO05D004249 4.4e-17 91.7 50 84.0
Haze_18437 Corylus avellana HOM05D003653 ORTHO05D004249 4.4e-17 91.7 51 84.3
Atru.chr7.1784 Acer truncatum HOM05D003653 ORTHO05D004249 5.7e-17 91.3 58 75.9
Pp3c10_7010 Physcomitrium patens HOM05D003653 ORTHO05D004249 1.7e-16 89.7 50 74.0
Zm00001eb040740 Zea mays HOM05D003653 ORTHO05D004249 1.7e-16 89.7 48 81.2
HanXRQChr11g0323951 Helianthus annuus HOM05D003653 ORTHO05D004249 2.2e-16 89.4 50 80.0
SalBow5G5324 Salvia bowleyana HOM05D003653 ORTHO05D004249 2.2e-16 89.4 49 79.6
MSTRG.26501 Avicennia marina HOM05D003653 ORTHO05D004249 2.8e-16 89.0 49 83.7
Gohir.A13G188800 Gossypium hirsutum HOM05D003653 ORTHO05D004249 2.8e-16 89.0 48 87.5
Gohir.D13G195800 Gossypium hirsutum HOM05D003653 ORTHO05D004249 2.8e-16 89.0 48 87.5
Gorai.013G221900 Gossypium raimondii HOM05D003653 ORTHO05D004249 2.8e-16 89.0 48 87.5
Lsat_1_v5_gn_9_48260 Lactuca sativa HOM05D003653 ORTHO05D004249 3.7e-16 88.6 48 85.4
ECA247G3145 Erigeron canadensis HOM05D003653 ORTHO05D004249 4.8e-16 88.2 48 83.3
HPP92_012790 Vanilla planifolia HOM05D003653 ORTHO05D004249 1.1e-15 87.0 49 75.5
Hund08907 Selenicereus undatus HOM05D003653 ORTHO05D004249 1.4e-15 86.7 51 76.5
DCAR_028533 Daucus carota HOM05D003653 ORTHO05D004249 3.1e-15 85.5 50 78.0
Cc06_g12780 Coffea canephora HOM05D003653 ORTHO05D004249 4.1e-15 85.1 51 74.5
SEGI_38760 Sequoiadendron giganteum HOM05D003653 ORTHO05D004249 4.1e-15 85.1 49 75.5
ClCG08G005060 Citrullus lanatus HOM05D003653 ORTHO05D004249 5.4e-15 84.7 48 83.3
TAR626G0857 Trochodendron aralioides HOM05D003653 ORTHO05D004249 7.0e-15 84.3 41 90.2
Os08g0451000 Oryza sativa ssp. japonica HOM05D003653 ORTHO05D004249 9.1e-15 84.0 47 80.9
Sed0017256 Sechium edule HOM05D003653 ORTHO05D004249 2.0e-14 82.8 48 81.2
MELO3C022888.2 Cucumis melo HOM05D003653 ORTHO05D004249 2.7e-14 82.4 43 88.4
CsaV3_5G037140 Cucumis sativus L. HOM05D003653 ORTHO05D004249 2.7e-14 82.4 43 88.4
C02p31060 Brassica napus HOM05D003653 ORTHO05D004249 5.9e-14 81.3 38 92.1
Nitab4.5_0001114g0100 Nicotiana tabacum HOM05D003653 ORTHO05D004249 7.7e-14 80.9 50 76.0
Nitab4.5_0022446g0010 Nicotiana tabacum HOM05D003653 ORTHO05D004249 7.7e-14 80.9 50 76.0
Aa31LG4G3690 Aethionema arabicum HOM05D003653 ORTHO05D004249 1.0e-13 80.5 37 94.6
Pp3c14_9870 Physcomitrium patens HOM05D003653 ORTHO05D004249 1.0e-13 80.5 50 68.0
Peaxi162Scf00320g00019 Petunia axillaris HOM05D003653 ORTHO05D004249 1.3e-13 80.1 50 72.0
Sopen07g006320 Solanum pennellii HOM05D003653 ORTHO05D004249 1.3e-13 80.1 50 76.0
CAN.G1364.1 Capsicum annuum HOM05D003653 ORTHO05D004249 1.7e-13 79.7 50 74.0
CAN.G2030.2 Capsicum annuum HOM05D003653 ORTHO05D004249 1.7e-13 79.7 50 74.0
CAN.G4608.1 Capsicum annuum HOM05D003653 ORTHO05D004249 1.7e-13 79.7 50 74.0
Mapoly0109s0022 Marchantia polymorpha HOM05D003653 ORTHO05D004249 1.7e-13 79.7 50 68.0
EL10Ac8g18959 Beta vulgaris HOM05D003653 ORTHO05D004249 2.2e-13 79.3 46 76.1
CAN.G137.40 Capsicum annuum HOM05D003653 ORTHO05D004249 2.2e-13 79.3 50 74.0
Solyc04g008640.3 Solanum lycopersicum HOM05D003653 ORTHO05D004249 2.2e-13 79.3 48 79.2
Sopen04g003800 Solanum pennellii HOM05D003653 ORTHO05D004249 2.2e-13 79.3 48 79.2
PGSC0003DMG400026759 Solanum tuberosum HOM05D003653 ORTHO05D004249 2.2e-13 79.3 54 70.4
BolC2t09153H Brassica oleracea HOM05D003653 ORTHO05D004249 2.9e-13 79.0 50 74.0
CBR_g20391 Chara braunii HOM05D003653 ORTHO05D004249 3.6e-11 72.0 40 70.0
BcaC08g46765 Brassica carinata HOM05D003653 ORTHO05D004249 4.7e-11 71.6 37 94.6
SMO196G0011 Selaginella moellendorffii HOM05D003653 ORTHO05D004249 4.1e-07 58.5 28 89.3


User provided reference genes

Program Settings