Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022667 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 7.3e-169 597.0 283 100.0
Actinidia28583 Actinidia chinensis HOM05D004328 ORTHO05D005210 1.1e-135 486.9 285 80.0
Hma1.2p1_0317F.1_g123230 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 1.6e-131 473.0 274 81.0
Rhsim12G0195900 Rhododendron simsii HOM05D004328 ORTHO05D005210 7.9e-131 470.7 281 79.7
vmacro16940 Vaccinium macrocarpon HOM05D004328 ORTHO05D005210 1.5e-129 466.5 286 79.0
Lj5C63T9 Lonicera japonica HOM05D004328 ORTHO05D005210 2.5e-129 465.7 283 79.2
Hma1.2p1_0682F.1_g202590 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 9.7e-129 463.8 281 77.2
Peaxi162Scf00015g00027 Petunia axillaris HOM05D004328 ORTHO05D005210 6.3e-128 461.1 277 76.9
Nitab4.5_0002424g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 3.1e-127 458.8 278 77.3
Nitab4.5_0000862g0040 Nicotiana tabacum HOM05D004328 ORTHO05D005210 6.9e-127 457.6 279 77.1
Lj9P505T43 Lonicera japonica HOM05D004328 ORTHO05D005210 1.2e-126 456.8 277 78.0
Cc01_g03290 Coffea canephora HOM05D004328 ORTHO05D005210 2.6e-126 455.7 284 73.9
Oeu014856.1 Olea europaea HOM05D004328 ORTHO05D005210 2.6e-126 455.7 277 74.4
PGR102G1437 Punica granatum HOM05D004328 ORTHO05D005210 5.9e-126 454.5 237 84.4
Nitab4.5_0003848g0010 Nicotiana tabacum HOM05D004328 ORTHO05D005210 7.7e-126 454.1 247 80.6
TAR629G0545 Trochodendron aralioides HOM05D004328 ORTHO05D005210 1.7e-125 453.0 281 75.4
CAN.G395.24 Capsicum annuum HOM05D004328 ORTHO05D005210 3.8e-125 451.8 255 80.8
PGSC0003DMG400016515 Solanum tuberosum HOM05D004328 ORTHO05D005210 5.0e-125 451.4 240 82.9
PGSC0003DMG400002634 Solanum tuberosum HOM05D004328 ORTHO05D005210 6.5e-125 451.1 238 85.3
FAN05G3798 Fragaria x ananassa HOM05D004328 ORTHO05D005210 1.1e-124 450.3 236 83.9
Sopen06g025090 Solanum pennellii HOM05D004328 ORTHO05D005210 1.1e-124 450.3 235 83.8
Eucgr.F02577 Eucalyptus grandis HOM05D004328 ORTHO05D005210 1.4e-124 449.9 248 80.2
Sopen03g039300 Solanum pennellii HOM05D004328 ORTHO05D005210 1.4e-124 449.9 238 84.5
Peaxi162Scf00207g00087 Petunia axillaris HOM05D004328 ORTHO05D005210 1.9e-124 449.5 238 83.6
FvH4_6g17800 Fragaria vesca HOM05D004328 ORTHO05D005210 2.5e-124 449.1 236 83.5
FAN02G3409 Fragaria x ananassa HOM05D004328 ORTHO05D005210 3.2e-124 448.7 236 83.5
RcHm_v2.0_Chr3g0472051 Rosa chinensis HOM05D004328 ORTHO05D005210 3.2e-124 448.7 255 80.0
FAN05G2947 Fragaria x ananassa HOM05D004328 ORTHO05D005210 5.5e-124 448.0 236 83.5
Haze_00368 Corylus avellana HOM05D004328 ORTHO05D005210 1.2e-123 446.8 254 79.9
Nitab4.5_0008539g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 1.6e-123 446.4 239 81.6
Solyc06g066800.2 Solanum lycopersicum HOM05D004328 ORTHO05D005210 1.6e-123 446.4 235 83.4
CAN.G438.47 Capsicum annuum HOM05D004328 ORTHO05D005210 2.1e-123 446.0 281 77.2
MSTRG.4726 Avicennia marina HOM05D004328 ORTHO05D005210 3.6e-123 445.3 259 78.0
Sc10g0005470 Simmondsia chinensis HOM05D004328 ORTHO05D005210 4.7e-123 444.9 279 74.6
QL09p020622 Quercus lobata HOM05D004328 ORTHO05D005210 6.1e-123 444.5 254 78.3
SGA_v2.0_scaffold117G32383 Striga asiatica HOM05D004328 ORTHO05D005210 7.9e-123 444.1 244 80.7
MELO3C003305.2 Cucumis melo HOM05D004328 ORTHO05D005210 1.8e-122 443.0 237 82.7
CiPaw.06G036200 Carya illinoinensis HOM05D004328 ORTHO05D005210 5.1e-122 441.4 246 79.7
Prupe.7G118400 Prunus persica HOM05D004328 ORTHO05D005210 5.1e-122 441.4 236 82.6
Atru.chr12.1869 Acer truncatum HOM05D004328 ORTHO05D005210 6.7e-122 441.0 253 78.3
AUR62011605 Chenopodium quinoa HOM05D004328 ORTHO05D005210 6.7e-122 441.0 251 80.5
Lalb_Chr09g0320061 Lupinus albus HOM05D004328 ORTHO05D005210 6.7e-122 441.0 256 77.3
Hund00585 Selenicereus undatus HOM05D004328 ORTHO05D005210 2.0e-121 439.5 246 79.7
TWI60G0134 Tripterygium wilfordii HOM05D004328 ORTHO05D005210 2.0e-121 439.5 257 75.9
MD12G1017300 Malus domestica HOM05D004328 ORTHO05D005210 2.6e-121 439.1 257 78.6
SalBow2G3162 Salvia bowleyana HOM05D004328 ORTHO05D005210 2.6e-121 439.1 256 78.1
AL2G19530 Arabidopsis lyrata HOM05D004328 ORTHO05D005210 5.7e-121 438.0 236 79.2
MD14G1015000 Malus domestica HOM05D004328 ORTHO05D005210 7.4e-121 437.6 258 78.3
Sp5g19300 Schrenkiella parvula HOM05D004328 ORTHO05D005210 1.3e-120 436.8 236 80.1
Ciclev10032525m.g Citrus clementina HOM05D004328 ORTHO05D005210 1.7e-120 436.4 240 79.6
Thhalv10019022m.g Eutrema salsugineum HOM05D004328 ORTHO05D005210 2.2e-120 436.0 254 76.8
Carub.0002s1013 Capsella rubella HOM05D004328 ORTHO05D005210 2.8e-120 435.6 236 79.2
SalBow2G3647 Salvia bowleyana HOM05D004328 ORTHO05D005210 2.8e-120 435.6 263 75.7
Phvul.011G017300 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 3.7e-120 435.3 244 78.7
Medtr6g046960 Medicago truncatula HOM05D004328 ORTHO05D005210 4.8e-120 434.9 236 80.9
SalBow2G0585 Salvia bowleyana HOM05D004328 ORTHO05D005210 4.8e-120 434.9 261 75.5
VMungo1215G1960 Vigna mungo HOM05D004328 ORTHO05D005210 4.8e-120 434.9 235 81.3
AT1G64980 Arabidopsis thaliana HOM05D004328 ORTHO05D005210 6.3e-120 434.5 236 79.2
EL10Ac9g21975 Beta vulgaris HOM05D004328 ORTHO05D005210 6.3e-120 434.5 275 72.7
Duzib177G0674 Durio zibethinus HOM05D004328 ORTHO05D005210 6.3e-120 434.5 235 82.1
Manes.08G160500 Manihot esculenta HOM05D004328 ORTHO05D005210 6.3e-120 434.5 238 81.1
Oeu022420.1 Olea europaea HOM05D004328 ORTHO05D005210 6.3e-120 434.5 239 79.9
Medtr5g007050 Medicago truncatula HOM05D004328 ORTHO05D005210 8.2e-120 434.1 256 76.6
CARHR056380 Cardamine hirsuta HOM05D004328 ORTHO05D005210 1.1e-119 433.7 244 77.5
Manes.09G129900 Manihot esculenta HOM05D004328 ORTHO05D005210 1.1e-119 433.7 246 78.9
Prupe.2G050300 Prunus persica HOM05D004328 ORTHO05D005210 1.4e-119 433.3 236 79.7
Thecc.05G223000 Theobroma cacao HOM05D004328 ORTHO05D005210 2.4e-119 432.6 234 82.1
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 3.1e-119 432.2 267 75.7
Ca_24428_v3 Cicer arietinum L. HOM05D004328 ORTHO05D005210 3.1e-119 432.2 252 77.4
DCAR_007553 Daucus carota HOM05D004328 ORTHO05D005210 3.1e-119 432.2 238 80.3
Glyma.11G008400 Glycine max HOM05D004328 ORTHO05D005210 3.1e-119 432.2 234 80.3
Potri.011G117500 Populus trichocarpa HOM05D004328 ORTHO05D005210 5.3e-119 431.4 236 80.9
Lsat_1_v5_gn_5_129800 Lactuca sativa HOM05D004328 ORTHO05D005210 6.9e-119 431.0 234 80.8
Psat2g189640 Pisum sativum HOM05D004328 ORTHO05D005210 6.9e-119 431.0 234 78.6
Glyma.01G234500 Glycine max HOM05D004328 ORTHO05D005210 9.1e-119 430.6 253 76.7
TPR.G37879 Trifolium pratense HOM05D004328 ORTHO05D005210 9.1e-119 430.6 253 75.5
PSO063G4889 Papaver somniferum HOM05D004328 ORTHO05D005210 1.2e-118 430.3 229 82.5
Sed0006415 Sechium edule HOM05D004328 ORTHO05D005210 1.2e-118 430.3 236 80.5
Aa31LG2G2180 Aethionema arabicum HOM05D004328 ORTHO05D005210 1.5e-118 429.9 236 79.2
arahy.Tifrunner.gnm1.ann1.BXRJ0F Arachis hypogaea HOM05D004328 ORTHO05D005210 1.5e-118 429.9 252 77.4
HanXRQChr09g0275421 Helianthus annuus HOM05D004328 ORTHO05D005210 2.6e-118 429.1 251 76.5
MBI04_g30767_MAGBIO Magnolia biondii HOM05D004328 ORTHO05D005210 3.4e-118 428.7 252 76.2
Gohir.A08G221646 Gossypium hirsutum HOM05D004328 ORTHO05D005210 4.5e-118 428.3 237 78.9
THA.LOC104805717 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 4.5e-118 428.3 234 79.5
MSTRG.11095 Avicennia marina HOM05D004328 ORTHO05D005210 5.9e-118 427.9 265 73.2
COL.COLO4_15130 Corchorus olitorius HOM05D004328 ORTHO05D005210 5.9e-118 427.9 240 80.8
Duzib128G0566 Durio zibethinus HOM05D004328 ORTHO05D005210 5.9e-118 427.9 235 80.4
Gohir.D08G240500 Gossypium hirsutum HOM05D004328 ORTHO05D005210 7.7e-118 427.6 228 81.1
Gorai.004G255800 Gossypium raimondii HOM05D004328 ORTHO05D005210 7.7e-118 427.6 228 81.1
Lsat_1_v5_gn_4_104460 Lactuca sativa HOM05D004328 ORTHO05D005210 1.0e-117 427.2 280 70.4
LjContig00222g0018106 Lotus japonicus HOM05D004328 ORTHO05D005210 1.0e-117 427.2 236 78.4
Phvul.002G041900 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 1.0e-117 427.2 259 74.1
CiPaw.05G212500 Carya illinoinensis HOM05D004328 ORTHO05D005210 1.3e-117 426.8 256 74.6
VMungo1127G1200 Vigna mungo HOM05D004328 ORTHO05D005210 1.7e-117 426.4 233 80.3
Migut.I00840 Erythranthe guttata HOM05D004328 ORTHO05D005210 2.2e-117 426.0 238 78.6
Potri.019G042500 Populus trichocarpa HOM05D004328 ORTHO05D005210 2.2e-117 426.0 252 76.6
Sed0022403 Sechium edule HOM05D004328 ORTHO05D005210 2.2e-117 426.0 234 80.3
THA.LOC104823797 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 2.9e-117 425.6 254 74.0
PSO782G5014 Papaver somniferum HOM05D004328 ORTHO05D005210 3.8e-117 425.2 229 81.7
unitig_21.g20512 Utricularia gibba HOM05D004328 ORTHO05D005210 3.8e-117 425.2 237 78.5
ECA232G0498 Erigeron canadensis HOM05D004328 ORTHO05D005210 5.0e-117 424.9 231 80.1
Sabra19G0052600 Salix brachista HOM05D004328 ORTHO05D005210 8.5e-117 424.1 251 76.9
Gohir.A02G114200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.1e-116 423.7 245 78.4
Gorai.003G058000 Gossypium raimondii HOM05D004328 ORTHO05D005210 1.1e-116 423.7 245 78.4
HanXRQChr14g0455981 Helianthus annuus HOM05D004328 ORTHO05D005210 3.2e-116 422.2 245 75.9
A02p12950 Brassica napus HOM05D004328 ORTHO05D005210 4.2e-116 421.8 239 77.0
Glyma.12G014400 Glycine max HOM05D004328 ORTHO05D005210 4.2e-116 421.8 235 79.1
unitig_744.g24340 Utricularia gibba HOM05D004328 ORTHO05D005210 4.2e-116 421.8 234 79.1
BraA02t06349Z Brassica rapa HOM05D004328 ORTHO05D005210 5.5e-116 421.4 239 76.6
Gohir.D03G055200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 5.5e-116 421.4 245 78.0
Aqoxy7G02544 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 1.2e-115 420.2 227 80.6
Sabra11G0102700 Salix brachista HOM05D004328 ORTHO05D005210 1.2e-115 420.2 245 77.6
BolC6t38986H Brassica oleracea HOM05D004328 ORTHO05D005210 1.6e-115 419.9 255 74.5
BraA07t30899Z Brassica rapa HOM05D004328 ORTHO05D005210 2.7e-115 419.1 255 73.7
CDE02G2329 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 2.7e-115 419.1 229 78.6
Nn3g21153 Nelumbo nucifera HOM05D004328 ORTHO05D005210 2.7e-115 419.1 268 71.3
A07p32730 Brassica napus HOM05D004328 ORTHO05D005210 3.6e-115 418.7 255 74.1
C02p21060 Brassica napus HOM05D004328 ORTHO05D005210 6.1e-115 417.9 240 75.4
BcaB05g24072 Brassica carinata HOM05D004328 ORTHO05D005210 8.0e-115 417.5 253 72.7
BcaC03g14669 Brassica carinata HOM05D004328 ORTHO05D005210 1.0e-114 417.2 240 75.4
BolC2t08247H Brassica oleracea HOM05D004328 ORTHO05D005210 1.0e-114 417.2 240 75.4
BcaB03g15334 Brassica carinata HOM05D004328 ORTHO05D005210 2.3e-114 416.0 255 74.1
C06p38940 Brassica napus HOM05D004328 ORTHO05D005210 2.3e-114 416.0 255 74.1
Aqoxy3G03943 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 3.0e-114 415.6 227 79.7
Carub.0005s0946 Capsella rubella HOM05D004328 ORTHO05D005210 3.9e-114 415.2 236 75.4
CANSAT21G1275 Cannabis sativa HOM05D004328 ORTHO05D005210 8.8e-114 414.1 228 78.1
BcaB03g15336 Brassica carinata HOM05D004328 ORTHO05D005210 5.7e-113 411.4 259 71.8
Nn8g40188 Nelumbo nucifera HOM05D004328 ORTHO05D005210 7.4e-113 411.0 244 74.2
ATR0829G052 Amborella trichopoda HOM05D004328 ORTHO05D005210 9.7e-113 410.6 226 77.9
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 2.2e-112 409.5 230 76.5
PSO135G0870 Papaver somniferum HOM05D004328 ORTHO05D005210 1.1e-111 407.1 227 78.0
PSO675G2272 Papaver somniferum HOM05D004328 ORTHO05D005210 2.4e-111 406.0 229 76.9
ECA234G3285 Erigeron canadensis HOM05D004328 ORTHO05D005210 7.0e-111 404.4 236 76.3
PSO384G3958 Papaver somniferum HOM05D004328 ORTHO05D005210 9.1e-111 404.1 249 73.1
PSO384G1513 Papaver somniferum HOM05D004328 ORTHO05D005210 1.6e-110 403.3 249 72.3
AUR62016419 Chenopodium quinoa HOM05D004328 ORTHO05D005210 2.0e-110 402.9 235 79.1
PSO502G0015 Papaver somniferum HOM05D004328 ORTHO05D005210 2.9e-109 399.1 229 76.0
SEGI_10122 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 1.1e-108 397.1 227 75.3
SHI15002 Sapria himalayana HOM05D004328 ORTHO05D005210 1.2e-107 393.7 264 67.8
HPP92_014971 Vanilla planifolia HOM05D004328 ORTHO05D005210 3.0e-106 389.0 233 73.4
SEGI_26076 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 8.8e-106 387.5 273 66.3
unitig_578.g16690 Utricularia gibba HOM05D004328 ORTHO05D005210 3.3e-105 385.6 264 67.0
Cpa.g.sc43.145 Carica papaya HOM05D004328 ORTHO05D005210 1.9e-100 369.8 215 78.6
SMO118G0121 Selaginella moellendorffii HOM05D004328 ORTHO05D005210 3.0e-98 362.5 223 70.9
Os10g0516400 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 7.5e-97 357.8 248 64.9
Os07g0413800 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 1.1e-95 354.0 244 64.3
Zm00001eb192470 Zea mays HOM05D004328 ORTHO05D005210 1.1e-95 354.0 240 67.1
CBR_g51102 Chara braunii HOM05D004328 ORTHO05D005210 9.1e-95 350.9 226 67.3
AagrBONN_evm.TU.Sc2ySwM_362.571 Anthoceros agrestis HOM05D004328 ORTHO05D005210 2.0e-94 349.7 227 67.0
Zm00001eb062050 Zea mays HOM05D004328 ORTHO05D005210 1.0e-93 347.4 259 62.2
Hma1.2p1_0323F.1_g125290 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 1.1e-92 344.0 274 64.2
MD07G1085100 Malus domestica HOM05D004328 ORTHO05D005210 1.1e-87 327.4 234 63.7
Cc04_g03630 Coffea canephora HOM05D004328 ORTHO05D005210 4.3e-84 315.5 159 86.8
GSVIVG01024323001 Vitis vinifera HOM05D004328 ORTHO05D005210 1.4e-82 310.5 166 84.3
Solyc03g120410.3 Solanum lycopersicum HOM05D004328 ORTHO05D005210 4.0e-82 308.9 158 86.7
Pp3c20_18260 Physcomitrium patens HOM05D004328 ORTHO05D005210 3.7e-64 249.2 191 60.7
Haze_27513 Corylus avellana HOM05D004328 ORTHO05D005210 5.1e-53 212.2 218 47.7
CDE06G1981 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.9e-52 210.3 230 45.7
CSS0035944 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 1.2e-49 201.1 202 52.5
GSVIVG01017160001 Vitis vinifera HOM05D004328 ORTHO05D005210 1.9e-39 167.2 89 84.3
HanXRQChr16g0528931 Helianthus annuus HOM05D004328 ORTHO05D005210 8.4e-32 141.7 107 65.4
CANSAT56G0697 Cannabis sativa HOM05D004328 ORTHO05D005210 3.3e-28 129.8 116 56.9
Actinidia15822 Actinidia chinensis HOM05D004328 ORTHO05D005210 7.6e-25 118.6 155 45.2
Sc12g0009110 Simmondsia chinensis HOM05D004328 ORTHO05D387867 3.6e-14 83.2 51 62.7
Zm00001eb029120 Zea mays HOM05D004328 ORTHO05D442189 8.8e-13 78.6 66 60.6


User provided reference genes

Program Settings