Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022656 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 3.3e-240 834.7 441 100.0
Actinidia12272 Actinidia chinensis HOM05D004001 ORTHO05D004559 6.3e-135 485.0 440 65.0
Actinidia31422 Actinidia chinensis HOM05D004001 ORTHO05D004559 2.2e-132 476.5 447 64.2
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 1.8e-121 440.3 442 61.1
vmacro13388 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 4.5e-117 425.6 455 61.1
Rhsim07G0026000 Rhododendron simsii HOM05D004001 ORTHO05D004559 6.6e-116 421.8 452 60.4
Atru.chr5.325 Acer truncatum HOM05D004001 ORTHO05D004559 2.7e-109 399.8 438 55.5
Manes.05G044000 Manihot esculenta HOM05D004001 ORTHO05D004559 6.0e-109 398.7 447 58.8
CiPaw.01G260600 Carya illinoinensis HOM05D004001 ORTHO05D004559 1.4e-105 387.5 478 52.9
Thecc.01G374400 Theobroma cacao HOM05D004001 ORTHO05D004559 1.8e-105 387.1 444 55.6
TWI14G1161 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 3.4e-104 382.9 439 57.4
Duzib138G1007 Durio zibethinus HOM05D004001 ORTHO05D004559 3.0e-100 369.8 440 53.9
Potri.014G071400 Populus trichocarpa HOM05D004001 ORTHO05D004559 5.1e-100 369.0 438 55.0
TAR636G3381 Trochodendron aralioides HOM05D004001 ORTHO05D004559 5.6e-99 365.5 450 54.4
TAR629G2254 Trochodendron aralioides HOM05D004001 ORTHO05D004559 2.2e-95 353.6 453 54.3
Gohir.A12G102200 Gossypium hirsutum HOM05D004001 ORTHO05D004559 4.9e-95 352.4 416 53.6
QL08p051978 Quercus lobata HOM05D004001 ORTHO05D004559 6.0e-93 345.5 446 50.4
Nitab4.5_0004320g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 8.6e-92 341.7 463 51.8
Gorai.008G114700 Gossypium raimondii HOM05D004001 ORTHO05D004559 1.1e-91 341.3 438 50.7
Glyma.09G268000 Glycine max HOM05D004001 ORTHO05D004559 2.5e-91 340.1 439 52.4
Gohir.D11G086300 Gossypium hirsutum HOM05D004001 ORTHO05D004559 1.2e-90 337.8 442 51.6
Nitab4.5_0010473g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 3.6e-90 336.3 463 51.2
Prupe.2G147400 Prunus persica HOM05D004001 ORTHO05D004559 3.1e-89 333.2 406 53.2
Ciclev10018784m.g Citrus clementina HOM05D004001 ORTHO05D004559 5.2e-89 332.4 423 52.7
Gohir.D12G105400 Gossypium hirsutum HOM05D004001 ORTHO05D004559 6.8e-89 332.0 346 56.9
Cfa001702 Carpinus fangiana HOM05D004001 ORTHO05D004559 1.2e-88 331.3 435 50.3
Peaxi162Scf00021g01316 Petunia axillaris HOM05D004001 ORTHO05D004559 2.0e-88 330.5 463 50.5
ClCG05G002120 Citrullus lanatus HOM05D004001 ORTHO05D004559 3.4e-88 329.7 443 51.0
Haze_16831 Corylus avellana HOM05D004001 ORTHO05D004559 9.9e-88 328.2 435 49.9
DCAR_006876 Daucus carota HOM05D004001 ORTHO05D004559 9.9e-88 328.2 422 51.4
CsaV3_3G009550 Cucumis sativus L. HOM05D004001 ORTHO05D004559 8.4e-87 325.1 444 50.9
CAN.G170.4 Capsicum annuum HOM05D004001 ORTHO05D004559 1.1e-86 324.7 462 50.6
Gorai.007G092200 Gossypium raimondii HOM05D004001 ORTHO05D004559 7.1e-86 322.0 442 50.0
Solyc01g091500.3 Solanum lycopersicum HOM05D004001 ORTHO05D004559 4.6e-85 319.3 463 50.3
MSTRG.20759 Avicennia marina HOM05D004001 ORTHO05D004559 6.0e-85 318.9 484 46.3
Rhsim07G0025900 Rhododendron simsii HOM05D004001 ORTHO05D004559 1.0e-84 318.2 302 62.9
PGSC0003DMG400012752 Solanum tuberosum HOM05D004001 ORTHO05D004559 2.3e-84 317.0 447 51.2
arahy.Tifrunner.gnm1.ann1.0Y1PWL Arachis hypogaea HOM05D004001 ORTHO05D004559 5.1e-84 315.8 446 49.1
Sopen01g037250 Solanum pennellii HOM05D004001 ORTHO05D004559 9.6e-83 311.6 468 49.8
Phvul.008G075200 Phaseolus vulgaris HOM05D004001 ORTHO05D004559 1.1e-81 308.1 411 51.8
Sabra14G0050700 Salix brachista HOM05D004001 ORTHO05D004559 4.0e-81 306.2 440 49.5
Sed0014964 Sechium edule HOM05D004001 ORTHO05D004559 9.0e-81 305.1 489 46.6
CANSAT56G0321 Cannabis sativa HOM05D004001 ORTHO05D004559 3.4e-80 303.1 436 52.1
MD02G1201400 Malus domestica HOM05D004001 ORTHO05D004559 1.7e-79 300.8 415 49.6
arahy.Tifrunner.gnm1.ann1.JKPH3R Arachis hypogaea HOM05D004001 ORTHO05D004559 3.8e-79 299.7 446 48.2
Lj1g0027935 Lotus japonicus HOM05D004001 ORTHO05D004559 4.9e-79 299.3 375 51.5
Glyma.18G221900 Glycine max HOM05D004001 ORTHO05D004559 1.4e-78 297.7 388 51.8
Lalb_Chr12g0208391 Lupinus albus HOM05D004001 ORTHO05D004559 1.4e-78 297.7 414 50.5
Lalb_Chr12g0208441 Lupinus albus HOM05D004001 ORTHO05D004559 1.4e-78 297.7 414 50.5
Eucgr.E01409 Eucalyptus grandis HOM05D004001 ORTHO05D004559 1.9e-78 297.4 445 47.2
VMungo1383G1498 Vigna mungo HOM05D004001 ORTHO05D004559 1.9e-78 297.4 376 54.0
Hund17008 Selenicereus undatus HOM05D004001 ORTHO05D004559 2.1e-77 293.9 520 45.0
Lalb_Chr07g0189651 Lupinus albus HOM05D004001 ORTHO05D004559 3.0e-76 290.0 412 47.3
Nn4g26437 Nelumbo nucifera HOM05D004001 ORTHO05D004559 3.0e-76 290.0 457 46.2
arahy.Tifrunner.gnm1.ann1.2UV9R4 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.1e-75 288.1 379 49.3
COL.COLO4_12572 Corchorus olitorius HOM05D004001 ORTHO05D004559 1.1e-75 288.1 342 52.9
Gohir.A11G081700 Gossypium hirsutum HOM05D004001 ORTHO05D004559 2.5e-75 287.0 412 49.0
Ca_07831_v3 Cicer arietinum L. HOM05D004001 ORTHO05D004559 3.6e-74 283.1 411 47.9
Lj9C572T3 Lonicera japonica HOM05D004001 ORTHO05D004559 6.2e-74 282.3 378 51.9
TPR.G26922 Trifolium pratense HOM05D004001 ORTHO05D004559 8.1e-74 282.0 382 50.5
Psat3g115320 Pisum sativum HOM05D004001 ORTHO05D004559 1.4e-73 281.2 414 48.6
MELO3C006177.2 Cucumis melo HOM05D004001 ORTHO05D004559 3.4e-72 276.6 412 48.3
FAN06G2206 Fragaria x ananassa HOM05D004001 ORTHO05D004559 3.4e-72 276.6 453 46.4
arahy.Tifrunner.gnm1.ann1.H5PXMS Arachis hypogaea HOM05D004001 ORTHO05D004559 5.8e-72 275.8 395 46.8
GSVIVG01027630001 Vitis vinifera HOM05D004001 ORTHO05D004559 5.8e-72 275.8 437 46.5
Cc02_g36540 Coffea canephora HOM05D004001 ORTHO05D004559 7.6e-72 275.4 430 44.7
SalBow5G4135 Salvia bowleyana HOM05D004001 ORTHO05D004559 1.7e-71 274.2 463 44.7
arahy.Tifrunner.gnm1.ann1.CI1NNE Arachis hypogaea HOM05D004001 ORTHO05D004559 1.4e-70 271.2 373 48.5
FAN10G1690 Fragaria x ananassa HOM05D004001 ORTHO05D004559 9.3e-70 268.5 423 47.0
RcHm_v2.0_Chr1g0350831 Rosa chinensis HOM05D004001 ORTHO05D004559 9.3e-70 268.5 420 47.6
EL10Ac1g00911 Beta vulgaris HOM05D004001 ORTHO05D004559 2.1e-69 267.3 444 44.1
Medtr7g075140 Medicago truncatula HOM05D004001 ORTHO05D004559 3.5e-69 266.5 423 46.6
FAN06G4715 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.0e-68 265.0 453 45.3
FAN10G1409 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.0e-68 265.0 453 45.3
arahy.Tifrunner.gnm1.ann1.EYC1DY Arachis hypogaea HOM05D004001 ORTHO05D004559 6.7e-68 262.3 414 46.6
FvH4_7g12090 Fragaria vesca HOM05D004001 ORTHO05D004559 6.7e-68 262.3 453 45.0
AUR62013619 Chenopodium quinoa HOM05D004001 ORTHO05D004559 1.6e-66 257.7 391 47.8
Oeu037907.1 Olea europaea HOM05D004001 ORTHO05D004559 1.6e-66 257.7 433 43.0
PSO478G3708 Papaver somniferum HOM05D004001 ORTHO05D004559 4.8e-66 256.1 464 43.5
arahy.Tifrunner.gnm1.ann1.9J1L2I Arachis hypogaea HOM05D004001 ORTHO05D004559 3.4e-64 250.0 417 44.8
AUR62004229 Chenopodium quinoa HOM05D004001 ORTHO05D004559 1.0e-63 248.4 445 45.2
Sc26g0001190 Simmondsia chinensis HOM05D004001 ORTHO05D004559 1.0e-63 248.4 441 43.1
MBI11_g23939_MAGBIO Magnolia biondii HOM05D004001 ORTHO05D004559 7.1e-62 242.3 387 46.3
PSO782G3046 Papaver somniferum HOM05D004001 ORTHO05D004559 8.7e-60 235.3 423 43.5
Aqoxy7G00586 Aquilegia oxysepala HOM05D004001 ORTHO05D004559 7.4e-59 232.3 443 42.7
Lj7C526G13 Lonicera japonica HOM05D004001 ORTHO05D004559 9.0e-57 225.3 444 43.0
HanXRQChr03g0093811 Helianthus annuus HOM05D004001 ORTHO05D004559 1.0e-52 211.8 386 45.1
ECA240G2591 Erigeron canadensis HOM05D004001 ORTHO05D004559 1.8e-52 211.1 333 46.8
FAN03G0266 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.8e-52 211.1 438 42.7
Thhalv10001303m.g Eutrema salsugineum HOM05D004001 ORTHO05D004559 1.5e-48 198.0 362 40.9
Ah.16g103740 Amaranthus hybridus HOM05D004001 ORTHO05D004559 3.4e-48 196.8 441 39.0
AL4G44630 Arabidopsis lyrata HOM05D004001 ORTHO05D004559 1.3e-47 194.9 400 39.0
AT2G45460 Arabidopsis thaliana HOM05D004001 ORTHO05D004559 6.5e-47 192.6 400 40.0
Carub.0004s2807 Capsella rubella HOM05D004001 ORTHO05D004559 1.9e-46 191.0 498 35.7
BcaC02g12205 Brassica carinata HOM05D004001 ORTHO05D004559 9.4e-46 188.7 385 39.5
Lsat_1_v5_gn_3_133301 Lactuca sativa HOM05D004001 ORTHO05D004559 1.2e-45 188.3 405 40.0
C04p06430 Brassica napus HOM05D004001 ORTHO05D004559 1.6e-45 188.0 385 39.5
BolC4t22266H Brassica oleracea HOM05D004001 ORTHO05D004559 3.6e-45 186.8 485 35.3
CARHR140650 Cardamine hirsuta HOM05D004001 ORTHO05D004559 1.0e-44 185.3 391 39.1
PGR042G2753 Punica granatum HOM05D004001 ORTHO05D004559 3.9e-44 183.3 463 35.6
Aa31LG1G26960 Aethionema arabicum HOM05D004001 ORTHO05D004559 5.1e-44 183.0 389 37.0
SGA_v2.0_scaffold95G28893 Striga asiatica HOM05D004001 ORTHO05D004559 1.5e-43 181.4 421 39.4
Sp4g27490 Schrenkiella parvula HOM05D004001 ORTHO05D004559 2.5e-43 180.6 397 37.8
BcaB02g08998 Brassica carinata HOM05D004001 ORTHO05D004559 9.7e-43 178.7 384 39.8
A05p05490 Brassica napus HOM05D004001 ORTHO05D004559 2.2e-42 177.6 386 38.1
BraA05t19519Z Brassica rapa HOM05D004001 ORTHO05D004559 1.8e-41 174.5 489 33.7
unitig_8.g3817 Utricularia gibba HOM05D004001 ORTHO05D004559 9.1e-41 172.2 412 37.9
Migut.B01647 Erythranthe guttata HOM05D004001 ORTHO05D004559 2.6e-40 170.6 422 40.0
CDE04G0282 Ceratophyllum demersum HOM05D004001 ORTHO05D004559 5.0e-39 166.4 438 38.4
Rhsim07G0026800 Rhododendron simsii HOM05D004001 ORTHO05D004559 1.4e-33 148.3 229 45.4
HPP92_018394 Vanilla planifolia HOM05D004001 ORTHO05D004559 5.9e-32 142.9 366 35.0
Os03g0127600 Oryza sativa ssp. japonica HOM05D004001 ORTHO05D004559 5.0e-31 139.8 427 33.7
Zm00001eb403560 Zea mays HOM05D004001 ORTHO05D004559 1.8e-25 121.3 441 31.7
SGA_v2.0_scaffold153G37027 Striga asiatica HOM05D004001 ORTHO05D001724 9.1e-25 119.0 427 34.2
Zm00001eb002020 Zea mays HOM05D004001 ORTHO05D004559 3.6e-21 107.1 381 32.8
unitig_31.g34038 Utricularia gibba HOM05D004001 ORTHO05D004559 7.5e-19 99.4 215 37.7
ATR0757G164 Amborella trichopoda HOM05D004001 ORTHO05D004559 1.3e-15 88.6 391 28.9
arahy.Tifrunner.gnm1.ann1.FJEF2G Arachis hypogaea HOM05D004001 ORTHO05D004559 2.7e-13 80.9 180 35.6
Cpa.g.sc18.133 Carica papaya HOM05D004001 ORTHO05D004559 6.8e-12 76.3 118 49.2
arahy.Tifrunner.gnm1.ann1.RB3Z54 Arachis hypogaea HOM05D004001 ORTHO05D004559 8.8e-12 75.9 124 40.3
SHI13515 Sapria himalayana HOM05D004001 ORTHO05D004559 2.0e-11 74.7 45 84.4
arahy.Tifrunner.gnm1.ann1.K6PBMX Arachis hypogaea HOM05D004001 ORTHO05D004559 2.2e-10 71.2 122 40.2
arahy.Tifrunner.gnm1.ann1.DK59KL Arachis hypogaea HOM05D004001 ORTHO05D004559 1.4e-09 68.6 124 39.5
arahy.Tifrunner.gnm1.ann1.LXQN6Z Arachis hypogaea HOM05D004001 ORTHO05D004559 1.8e-09 68.2 325 29.5
arahy.Tifrunner.gnm1.ann1.8SNI53 Arachis hypogaea HOM05D004001 ORTHO05D004559 4.1e-09 67.0 41 82.9
arahy.Tifrunner.gnm1.ann1.73J9IG Arachis hypogaea HOM05D004001 ORTHO05D004559 3.5e-08 63.9 56 62.5
SEGI_21780 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 3.5e-08 63.9 482 25.9
arahy.Tifrunner.gnm1.ann1.2V3ERI Arachis hypogaea HOM05D004001 ORTHO05D004559 7.7e-08 62.8 115 35.7
Rhsim07G0026900 Rhododendron simsii HOM05D004001 ORTHO05D339526 8.6e-07 59.3 70 58.6
arahy.Tifrunner.gnm1.ann1.63QVJR Arachis hypogaea HOM05D004001 ORTHO05D004559 1.5e-06 58.5 120 35.0


User provided reference genes

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