Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022645 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D018836 3.0e-44 182.2 150 100.0
CSS0036916 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D002608 8.4e-31 137.5 95 84.2
GSVIVG01033614001 Vitis vinifera HOM05D000240 ORTHO05D002608 7.1e-22 107.8 134 52.2
Rhsim08G0184500 Rhododendron simsii HOM05D000240 ORTHO05D002608 1.5e-19 100.1 134 50.7
Lj2A398T49 Lonicera japonica HOM05D000240 ORTHO05D002608 1.9e-19 99.8 134 62.7
THA.LOC104816404 Tarenaya hassleriana HOM05D000240 ORTHO05D002608 2.4e-17 92.8 142 44.4
Lsat_1_v5_gn_6_79340 Lactuca sativa HOM05D000240 ORTHO05D002608 4.1e-17 92.0 150 41.3
Ciclev10004865m.g Citrus clementina HOM05D000240 ORTHO05D002608 5.3e-17 91.7 134 46.3
Eucgr.A02253 Eucalyptus grandis HOM05D000240 ORTHO05D018836 5.3e-17 91.7 134 47.0
EL10Ac3g07197 Beta vulgaris HOM05D000240 ORTHO05D002608 1.5e-16 90.1 146 45.2
Cfa020015 Carpinus fangiana HOM05D000240 ORTHO05D002608 5.9e-16 88.2 133 64.7
COL.COLO4_08473 Corchorus olitorius HOM05D000240 ORTHO05D002608 1.0e-15 87.4 142 52.8
Haze_16236 Corylus avellana HOM05D000240 ORTHO05D002608 1.3e-15 87.0 133 64.7
Thecc.05G137000 Theobroma cacao HOM05D000240 ORTHO05D002608 1.3e-15 87.0 142 44.4
Nitab4.5_0002208g0050 Nicotiana tabacum HOM05D000240 ORTHO05D002608 2.2e-15 86.3 134 49.3
Gohir.A11G307601 Gossypium hirsutum HOM05D000240 ORTHO05D002608 2.9e-15 85.9 134 46.3
Sc13g0001240 Simmondsia chinensis HOM05D000240 ORTHO05D002608 3.8e-15 85.5 87 60.9
TAR633G0479 Trochodendron aralioides HOM05D000240 ORTHO05D002608 3.8e-15 85.5 134 41.8
Cc00_g02410 Coffea canephora HOM05D000240 ORTHO05D002608 6.5e-15 84.7 133 44.4
MD14G1085100 Malus domestica HOM05D000240 ORTHO05D002608 6.5e-15 84.7 74 64.9
Prupe.7G041000 Prunus persica HOM05D000240 ORTHO05D002608 8.5e-15 84.3 134 47.0
Hund19103 Selenicereus undatus HOM05D000240 ORTHO05D002608 8.5e-15 84.3 134 46.3
QL07p009810 Quercus lobata HOM05D000240 ORTHO05D002608 1.9e-14 83.2 77 61.0
Gohir.D11G323100 Gossypium hirsutum HOM05D000240 ORTHO05D002608 2.5e-14 82.8 134 44.8
Gorai.007G353100 Gossypium raimondii HOM05D000240 ORTHO05D002608 2.5e-14 82.8 134 44.8
SGA_v2.0_scaffold105G30298 Striga asiatica HOM05D000240 ORTHO05D002608 2.5e-14 82.8 134 50.7
CiPaw.09G046800 Carya illinoinensis HOM05D000240 ORTHO05D002608 3.2e-14 82.4 133 41.4
Nitab4.5_0002162g0030 Nicotiana tabacum HOM05D000240 ORTHO05D002608 3.2e-14 82.4 73 64.4
Cpa.g.sc1212.3 Carica papaya HOM05D000240 ORTHO05D002608 5.5e-14 81.6 134 47.8
AUR62030350 Chenopodium quinoa HOM05D000240 ORTHO05D002608 9.3e-14 80.9 72 65.3
Duzib106G0433 Durio zibethinus HOM05D000240 ORTHO05D002608 1.2e-13 80.5 133 48.1
CAN.G1280.50 Capsicum annuum HOM05D000127 ORTHO05D002608 1.6e-13 80.1 134 42.5
TWI77G1020 Tripterygium wilfordii HOM05D000240 ORTHO05D002608 1.6e-13 80.1 145 41.4
Potri.006G040700 Populus trichocarpa HOM05D000240 ORTHO05D002608 2.1e-13 79.7 134 59.7
Migut.J01665 Erythranthe guttata HOM05D000240 ORTHO05D002608 3.6e-13 79.0 134 44.0
DCAR_006071 Daucus carota HOM05D000240 ORTHO05D002608 4.6e-13 78.6 134 41.8
Solyc04g040110.3 Solanum lycopersicum HOM05D000240 ORTHO05D002608 4.6e-13 78.6 73 61.6
FAN03G2757 Fragaria x ananassa HOM05D000240 ORTHO05D002608 6.1e-13 78.2 83 49.4
Sabra06G0027600 Salix brachista HOM05D000240 ORTHO05D002608 6.1e-13 78.2 134 59.7
FAN10G3808 Fragaria x ananassa HOM05D000240 ORTHO05D015017 7.9e-13 77.8 84 51.2
Sopen04g016330 Solanum pennellii HOM05D000240 ORTHO05D002608 1.0e-12 77.4 73 60.3
BraA03t12743Z Brassica rapa HOM05D000240 ORTHO05D002608 1.8e-12 76.6 142 39.4
Gohir.D04G091200 Gossypium hirsutum HOM05D000240 ORTHO05D018836 1.8e-12 76.6 76 60.5
Gorai.009G392300 Gossypium raimondii HOM05D000240 ORTHO05D018836 1.8e-12 76.6 76 60.5
Actinidia09265 Actinidia chinensis HOM05D000240 ORTHO05D002608 5.1e-12 75.1 134 71.6
FAN06G4340 Fragaria x ananassa HOM05D000240 ORTHO05D002608 6.7e-12 74.7 83 48.2
FAN28G0852 Fragaria x ananassa HOM05D000240 ORTHO05D002608 1.1e-11 73.9 71 56.3
FAN28G2091 Fragaria x ananassa HOM05D000240 ORTHO05D002608 1.1e-11 73.9 71 56.3
RcHm_v2.0_Chr1g0323861 Rosa chinensis HOM05D000240 ORTHO05D002608 1.5e-11 73.6 73 54.8
PSO384G4909 Papaver somniferum HOM05D000240 ORTHO05D002608 1.9e-11 73.2 140 55.7
MBI14_g34249_MAGBIO Magnolia biondii HOM05D000240 ORTHO05D002608 2.5e-11 72.8 82 53.7
Sed0010747 Sechium edule HOM05D000240 ORTHO05D002608 3.3e-11 72.4 77 55.8
Gohir.D10G111332 Gossypium hirsutum HOM05D000240 ORTHO05D018836 4.3e-11 72.0 66 63.6
MELO3C009763.2 Cucumis melo HOM05D000240 ORTHO05D002608 5.7e-11 71.6 77 54.5
PGR031G0545 Punica granatum HOM05D000240 ORTHO05D002608 5.7e-11 71.6 130 48.5
CANSAT64G1418 Cannabis sativa HOM05D000240 ORTHO05D002608 9.7e-11 70.9 56 67.9
CsaV3_3G040260 Cucumis sativus L. HOM05D000240 ORTHO05D002608 9.7e-11 70.9 77 54.5
Phvul.001G052600 Phaseolus vulgaris HOM05D000240 ORTHO05D002608 1.3e-10 70.5 77 53.2
Gorai.002G187100 Gossypium raimondii HOM05D000240 ORTHO05D018836 1.7e-10 70.1 66 62.1
SalBow6G3141 Salvia bowleyana HOM05D000240 ORTHO05D002608 3.7e-10 68.9 79 49.4
TPR.G2588 Trifolium pratense HOM05D000240 ORTHO05D002608 4.8e-10 68.6 77 53.2
AUR62040836 Chenopodium quinoa HOM05D000240 ORTHO05D002608 1.4e-09 67.0 47 74.5
Glyma.17G208400 Glycine max HOM05D000240 ORTHO05D002608 1.8e-09 66.6 77 50.6
Medtr1g484960 Medicago truncatula HOM05D000240 ORTHO05D002608 1.8e-09 66.6 77 51.9
BcaB03g11571 Brassica carinata HOM05D000240 ORTHO05D002608 2.4e-09 66.2 142 39.4
VMungo0647G2525 Vigna mungo HOM05D000240 ORTHO05D002608 2.4e-09 66.2 75 53.3
Ah.04g151070 Amaranthus hybridus HOM05D000240 ORTHO05D002608 3.1e-09 65.9 50 72.0
A03p35680 Brassica napus HOM05D000240 ORTHO05D002608 4.1e-09 65.5 142 40.1
CDE02G4365 Ceratophyllum demersum HOM05D000240 ORTHO05D018836 4.1e-09 65.5 74 48.6
Thhalv10019913m.g Eutrema salsugineum HOM05D000240 ORTHO05D002608 4.1e-09 65.5 65 58.5
Ca_12048_v3 Cicer arietinum L. HOM05D000240 ORTHO05D002608 5.3e-09 65.1 72 55.6
Lj5g0004487 Lotus japonicus HOM05D000240 ORTHO05D002608 5.3e-09 65.1 77 51.9
Aa31LG3G2730 Aethionema arabicum HOM05D000240 ORTHO05D002608 6.9e-09 64.7 64 59.4
AT3G10180 Arabidopsis thaliana HOM05D000240 ORTHO05D002608 9.1e-09 64.3 66 60.6
BcaC01g04262 Brassica carinata HOM05D000240 ORTHO05D002608 9.1e-09 64.3 134 41.0
C03p43330 Brassica napus HOM05D000240 ORTHO05D002608 9.1e-09 64.3 134 41.0
BolC3t16603H Brassica oleracea HOM05D000240 ORTHO05D002608 9.1e-09 64.3 134 41.0
FvH4_7g02901 Fragaria vesca HOM05D000240 ORTHO05D002608 9.1e-09 64.3 83 45.8
Oeu059334.1 Olea europaea HOM05D000240 ORTHO05D002608 9.1e-09 64.3 134 35.8
AL3G21510 Arabidopsis lyrata HOM05D000240 ORTHO05D002608 1.5e-08 63.5 56 64.3
ECA240G1295 Erigeron canadensis HOM05D000240 ORTHO05D002608 2.0e-08 63.2 77 45.5
HanXRQChr13g0414111 Helianthus annuus HOM05D000240 ORTHO05D002608 2.0e-08 63.2 56 58.9
Carub.0003s0933 Capsella rubella HOM05D000240 ORTHO05D002608 2.6e-08 62.8 57 63.2
Sp3g08460 Schrenkiella parvula HOM05D000240 ORTHO05D002608 1.0e-07 60.8 142 41.5
arahy.Tifrunner.gnm1.ann1.CVH2M9 Arachis hypogaea HOM05D000240 ORTHO05D002608 1.3e-07 60.5 77 49.4
Nn7g36671 Nelumbo nucifera HOM05D000240 ORTHO05D002608 8.5e-07 57.8 134 34.3
Peaxi162Scf01010g00017 Petunia axillaris HOM05D000240 ORTHO05D002608 2.5e-06 56.2 54 59.3
arahy.Tifrunner.gnm1.ann1.5T4GGV Arachis hypogaea HOM05D000240 ORTHO05D002608 5.5e-06 55.1 77 46.8


User provided reference genes

Program Settings