Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022594 Camellia sinensis var. sinensis HOM05D001443 ORTHO05D001352 8.0e-150 533.9 297 100.0
CSS0045360 Camellia sinensis var. sinensis HOM05D001443 ORTHO05D001352 2.4e-85 319.7 376 54.3
CSS0000793 Camellia sinensis var. sinensis HOM05D001443 ORTHO05D001352 1.8e-77 293.5 376 56.4
CSS0046346 Camellia sinensis var. sinensis HOM05D001443 ORTHO05D001352 1.9e-74 283.5 396 50.5
Rhsim11G0045600 Rhododendron simsii HOM05D001443 ORTHO05D001352 3.7e-54 216.1 342 53.8
vmacro00155 Vaccinium macrocarpon HOM05D001443 ORTHO05D001352 3.1e-53 213.0 343 52.8
Sopen12g031850 Solanum pennellii HOM05D001443 ORTHO05D001352 1.0e-51 208.0 374 48.4
Duzib150G1159 Durio zibethinus HOM05D001443 ORTHO05D001352 1.3e-51 207.6 400 43.8
Hma1.2p1_0482F.1_g162680 Hydrangea macrophylla HOM05D001443 ORTHO05D001352 3.2e-50 203.0 357 47.6
Manes.16G078700 Manihot esculenta HOM05D001443 ORTHO05D001352 4.2e-50 202.6 394 41.1
Hma1.2p1_1944F.1_g308600 Hydrangea macrophylla HOM05D001443 ORTHO05D001352 1.6e-49 200.7 357 47.3
Dinv27972 Davidia involucrata HOM05D001443 ORTHO05D001352 6.7e-48 195.3 375 45.9
PGSC0003DMG400029301 Solanum tuberosum HOM05D001443 ORTHO05D001352 8.8e-48 194.9 373 45.6
Medtr3g104280 Medicago truncatula HOM05D001443 ORTHO05D001352 2.6e-47 193.4 361 41.8
Hma1.2p1_0450F.1_g155610 Hydrangea macrophylla HOM05D001443 ORTHO05D001352 2.8e-46 189.9 336 45.2
MD15G1061600 Malus domestica HOM05D001443 ORTHO05D001352 4.1e-45 186.0 397 41.8
Prupe.1G414200 Prunus persica HOM05D001443 ORTHO05D001352 9.1e-45 184.9 395 40.8
Solyc12g095960.3 Solanum lycopersicum HOM05D001443 ORTHO05D001352 1.2e-44 184.5 382 44.0
Sed0026795 Sechium edule HOM05D001443 ORTHO05D001352 6.5e-43 178.7 379 40.1
COL.COLO4_21036 Corchorus olitorius HOM05D001443 ORTHO05D001352 3.2e-42 176.4 398 40.7
Actinidia18193 Actinidia chinensis HOM05D001443 ORTHO05D001352 9.4e-42 174.9 380 47.9
DCAR_003086 Daucus carota HOM05D001443 ORTHO05D001352 2.7e-41 173.3 363 44.1
Glyma.14G093200 Glycine max HOM05D001443 ORTHO05D001352 3.6e-41 172.9 394 41.4
Psat0ss1279g0040 Pisum sativum HOM05D001443 ORTHO05D001352 3.6e-41 172.9 361 39.9
Lj1g0011088 Lotus japonicus HOM05D001443 ORTHO05D001352 5.2e-40 169.1 375 45.9
CsaV3_2G025660 Cucumis sativus L. HOM05D001443 ORTHO05D001352 1.2e-39 167.9 395 38.0
Ciclev10007663m.g Citrus clementina HOM05D001443 ORTHO05D001352 9.7e-39 164.9 390 45.1
FAN27G1512 Fragaria x ananassa HOM05D001443 ORTHO05D001352 2.8e-38 163.3 399 39.1
Oeu029405.1 Olea europaea HOM05D001443 ORTHO05D001352 2.8e-38 163.3 381 42.5
TWI34G1891 Tripterygium wilfordii HOM05D001443 ORTHO05D001352 1.1e-37 161.4 399 37.8
MELO3C010761.2 Cucumis melo HOM05D001443 ORTHO05D001352 1.4e-37 161.0 397 37.3
Potri.018G055300 Populus trichocarpa HOM05D001443 ORTHO05D001352 2.4e-37 160.2 411 39.2
Gohir.D06G088400 Gossypium hirsutum HOM05D001443 ORTHO05D001352 3.1e-37 159.8 385 43.6
Gorai.010G102100 Gossypium raimondii HOM05D001443 ORTHO05D001352 3.1e-37 159.8 385 43.6
Sabra18G0049800 Salix brachista HOM05D001443 ORTHO05D001352 3.1e-37 159.8 397 39.8
TAR383G0280 Trochodendron aralioides HOM05D001443 ORTHO05D001352 3.1e-37 159.8 416 38.0
MBI04_g37934_MAGBIO Magnolia biondii HOM05D001443 ORTHO05D001352 1.6e-36 157.5 340 45.3
VMungo1309G3077 Vigna mungo HOM05D001443 ORTHO05D001352 3.5e-36 156.4 382 37.2
Gohir.A06G088300 Gossypium hirsutum HOM05D001443 ORTHO05D001352 4.5e-36 156.0 385 42.9
FAN20G1898 Fragaria x ananassa HOM05D001443 ORTHO05D001352 5.9e-36 155.6 398 40.5
Lalb_Chr24g0399601 Lupinus albus HOM05D001443 ORTHO05D001352 1.0e-35 154.8 367 39.0
CiPaw.16G029500 Carya illinoinensis HOM05D001443 ORTHO05D001352 1.3e-35 154.5 400 38.2
Medtr3g104270 Medicago truncatula HOM05D001443 ORTHO05D001352 2.9e-35 153.3 370 36.8
FvH4_2g32110 Fragaria vesca HOM05D001443 ORTHO05D001352 1.5e-34 151.0 401 38.7
FAN24G0735 Fragaria x ananassa HOM05D002015 ORTHO05D001352 1.5e-34 151.0 401 38.7
Cc08_g10400 Coffea canephora HOM05D001443 ORTHO05D001352 2.5e-34 150.2 397 42.3
Oeu037328.1 Olea europaea HOM05D001443 ORTHO05D001352 4.2e-34 149.4 368 40.2
Manes.16G078600 Manihot esculenta HOM05D001443 ORTHO05D001352 9.4e-34 148.3 386 39.6
Oeu018652.2 Olea europaea HOM05D001443 ORTHO05D001352 1.2e-33 147.9 373 46.4
Duzib168G0433 Durio zibethinus HOM05D001443 ORTHO05D001352 1.6e-33 147.5 382 44.2
Phvul.009G076800 Phaseolus vulgaris HOM05D001443 ORTHO05D001352 4.7e-33 146.0 376 39.6
Lalb_Chr14g0367811 Lupinus albus HOM05D001443 ORTHO05D001352 6.1e-33 145.6 332 39.5
CAN.G208.76 Capsicum annuum HOM05D001443 ORTHO05D001352 1.4e-32 144.4 386 42.2
Lju3103C0G13 Lonicera japonica HOM05D001443 ORTHO05D001352 1.8e-32 144.1 323 40.9
Nitab4.5_0001179g0110 Nicotiana tabacum HOM05D001443 ORTHO05D001352 1.8e-32 144.1 396 38.4
Nitab4.5_0001584g0060 Nicotiana tabacum HOM05D001443 ORTHO05D001352 3.0e-32 143.3 397 38.3
Potri.006G231800 Populus trichocarpa HOM05D001443 ORTHO05D001352 5.2e-32 142.5 398 41.2
Haze_18206 Corylus avellana HOM05D001443 ORTHO05D001352 6.8e-32 142.1 401 36.7
VMungo1309G2260 Vigna mungo HOM05D001443 ORTHO05D001352 6.8e-32 142.1 371 35.6
CiPaw.16G029700 Carya illinoinensis HOM05D001443 ORTHO05D001352 8.8e-32 141.7 291 47.4
Eucgr.C03020 Eucalyptus grandis HOM05D001443 ORTHO05D001352 8.8e-32 141.7 384 39.1
Lj7C280G0 Lonicera japonica HOM05D001443 ORTHO05D001352 1.2e-31 141.4 403 37.0
ClCG08G016950 Citrullus lanatus HOM05D001443 ORTHO05D001352 2.0e-31 140.6 412 33.5
Lj5g0018193 Lotus japonicus HOM05D001443 ORTHO05D001352 2.6e-31 140.2 385 37.1
Thecc.09G052100 Theobroma cacao HOM05D001443 ORTHO05D001352 5.7e-31 139.0 395 37.0
RcHm_v2.0_Chr6g0310631 Rosa chinensis HOM05D001443 ORTHO05D001352 9.8e-31 138.3 403 36.7
FAN15G3039 Fragaria x ananassa HOM05D001443 ORTHO05D001352 1.3e-30 137.9 392 39.0
Migut.E01558 Erythranthe guttata HOM05D001443 ORTHO05D001352 4.8e-30 136.0 364 37.9
MD08G1044200 Malus domestica HOM05D001443 ORTHO05D001352 4.8e-30 136.0 392 37.0
DCAR_004440 Daucus carota HOM05D001443 ORTHO05D001352 6.3e-30 135.6 360 41.9
arahy.Tifrunner.gnm1.ann1.7QGM13 Arachis hypogaea HOM05D001443 ORTHO05D001352 5.4e-29 132.5 372 36.0
Glyma.17G230300 Glycine max HOM05D001443 ORTHO05D001352 1.2e-28 131.3 361 37.4
Lalb_Chr22g0356061 Lupinus albus HOM05D001443 ORTHO05D001352 2.7e-28 130.2 338 41.4
Cfa017941 Carpinus fangiana HOM05D001443 ORTHO05D001352 4.5e-28 129.4 385 38.7
Dinv23429 Davidia involucrata HOM05D001443 ORTHO05D001352 4.5e-28 129.4 392 36.2
arahy.Tifrunner.gnm1.ann1.1JP5NC Arachis hypogaea HOM05D001443 ORTHO05D001352 5.9e-28 129.0 381 38.3
Psat6g019480 Pisum sativum HOM05D001443 ORTHO05D001352 5.9e-28 129.0 377 39.0
Atru.chr7.1037 Acer truncatum HOM05D001443 ORTHO05D001352 1.3e-27 127.9 294 38.1
Phvul.009G076600 Phaseolus vulgaris HOM05D001443 ORTHO05D001352 2.3e-27 127.1 377 36.6
AUR62009169 Chenopodium quinoa HOM05D001443 ORTHO05D001352 5.0e-27 125.9 336 41.7
arahy.Tifrunner.gnm1.ann1.WC628Y Arachis hypogaea HOM05D001443 ORTHO05D001352 8.6e-27 125.2 381 38.1
Aqoxy7G01266 Aquilegia oxysepala HOM05D001443 ORTHO05D001352 1.1e-26 124.8 408 36.5
Nitab4.5_0009587g0010 Nicotiana tabacum HOM05D001443 ORTHO05D001352 4.2e-26 122.9 385 40.0
TWI32G0683 Tripterygium wilfordii HOM05D001443 ORTHO05D001352 9.5e-26 121.7 399 36.3
PGSC0003DMG400002210 Solanum tuberosum HOM05D001443 ORTHO05D001352 1.2e-25 121.3 402 35.3
CANSAT25G0392 Cannabis sativa HOM05D001443 ORTHO05D001352 6.1e-25 119.0 267 42.3
Oeu036343.1 Olea europaea HOM05D001443 ORTHO05D001352 1.4e-24 117.9 355 37.5
ECA233G0783 Erigeron canadensis HOM05D001443 ORTHO05D001352 1.8e-24 117.5 363 36.6
TAR624G1164 Trochodendron aralioides HOM05D001443 ORTHO05D001352 1.8e-24 117.5 329 38.6
Ca_15868_v3 Cicer arietinum L. HOM05D001443 ORTHO05D001352 5.2e-24 115.9 346 42.5
TAR624G0653 Trochodendron aralioides HOM05D001033 ORTHO05D002045 1.2e-23 114.8 329 38.3
TAR626G0821 Trochodendron aralioides HOM05D001229 ORTHO05D001352 2.0e-23 114.0 420 33.6
Glyma.04G050500 Glycine max HOM05D001443 ORTHO05D001352 2.6e-23 113.6 302 37.4
TPR.G3592 Trifolium pratense HOM05D001443 ORTHO05D001352 3.4e-23 113.2 369 40.4
AUR62022055 Chenopodium quinoa HOM05D001443 ORTHO05D001352 9.8e-23 111.7 331 45.0
CDE07G0803 Ceratophyllum demersum HOM05D001443 ORTHO05D001352 2.2e-22 110.5 332 33.4
Thhalv10001945m.g Eutrema salsugineum HOM05D001443 ORTHO05D001352 2.2e-22 110.5 356 36.8
MBI01_g02268_MAGBIO Magnolia biondii HOM05D001443 ORTHO05D001352 2.2e-22 110.5 301 41.9
Gohir.A05G043300 Gossypium hirsutum HOM05D001443 ORTHO05D001352 6.3e-22 109.0 365 34.0
Medtr1g016760 Medicago truncatula HOM05D001443 ORTHO05D001352 6.3e-22 109.0 378 36.2
GSVIVG01035354001 Vitis vinifera HOM05D001443 ORTHO05D001352 8.3e-22 108.6 190 43.2
Gohir.D05G045000 Gossypium hirsutum HOM05D001443 ORTHO05D001352 2.4e-21 107.1 372 37.9
Gorai.009G046100 Gossypium raimondii HOM05D001443 ORTHO05D001352 2.4e-21 107.1 372 37.9
Sed0027567 Sechium edule HOM05D001443 ORTHO05D001352 2.4e-21 107.1 375 36.3
Migut.A00146 Erythranthe guttata HOM05D001443 ORTHO05D001352 9.2e-21 105.1 344 35.8
QL11p052292 Quercus lobata HOM05D001443 ORTHO05D001352 9.2e-21 105.1 260 38.5
Sp4g05870 Schrenkiella parvula HOM05D001443 ORTHO05D001352 1.2e-20 104.8 258 39.1
Glyma.06G051200 Glycine max HOM05D001443 ORTHO05D001352 2.0e-20 104.0 334 38.6
TPR.G13013 Trifolium pratense HOM05D001443 ORTHO05D001352 5.9e-20 102.4 280 35.7
ECA240G2406 Erigeron canadensis HOM05D001443 ORTHO05D001352 1.3e-19 101.3 355 37.2
Nitab4.5_0000738g0120 Nicotiana tabacum HOM05D001443 ORTHO05D001352 1.7e-19 100.9 383 36.3
Lj8C550G1 Lonicera japonica HOM05D001443 ORTHO05D001352 5.0e-19 99.4 373 34.3
Actinidia14705 Actinidia chinensis HOM05D001443 ORTHO05D001352 6.6e-19 99.0 120 54.2
Cpa.g.sc7.198 Carica papaya HOM05D001443 ORTHO05D001352 2.5e-18 97.1 396 34.3
PSO063G2194 Papaver somniferum HOM05D001443 ORTHO05D001352 2.5e-18 97.1 398 33.4
EL10Ac2g03917 Beta vulgaris HOM05D001443 ORTHO05D001352 9.5e-18 95.1 379 33.0
Ca_13179_v3 Cicer arietinum L. HOM05D001443 ORTHO05D001352 9.5e-18 95.1 373 33.2
QL02p001442 Quercus lobata HOM05D001443 ORTHO05D001352 2.1e-17 94.0 417 30.5
Aa31LG5G9730 Aethionema arabicum HOM05D001443 ORTHO05D001352 8.0e-17 92.0 272 36.8
PSO832G3656 Papaver somniferum HOM05D001443 ORTHO05D001352 8.0e-17 92.0 406 32.8
C04p55900 Brassica napus HOM05D001443 ORTHO05D001352 8.9e-16 88.6 338 39.3
Os02g0224300 Oryza sativa ssp. japonica HOM05D001443 ORTHO05D001352 2.6e-15 87.0 384 33.1
BcaB06g29611 Brassica carinata HOM05D001443 ORTHO05D001352 5.8e-15 85.9 344 38.1
CARHR287340 Cardamine hirsuta HOM05D001443 ORTHO05D001352 7.5e-15 85.5 259 36.7
Sopen08g019330 Solanum pennellii HOM05D001443 ORTHO05D001352 7.5e-15 85.5 146 43.8
Zm00001eb239890 Zea mays HOM05D001443 ORTHO05D001352 7.5e-15 85.5 293 35.2
AT2G25970 Arabidopsis thaliana HOM05D001443 ORTHO05D001352 2.2e-14 84.0 259 37.8
Nn8g38919 Nelumbo nucifera HOM05D001443 ORTHO05D001352 2.2e-14 84.0 345 33.9
BcaC02g08312 Brassica carinata HOM05D001443 ORTHO05D001352 3.7e-14 83.2 337 38.0
BolC4t27123H Brassica oleracea HOM05D001443 ORTHO05D001352 3.7e-14 83.2 337 38.0
Ah.10g034480 Amaranthus hybridus HOM05D001443 ORTHO05D001352 4.9e-14 82.8 374 32.1
Sc09g0009730 Simmondsia chinensis HOM05D001443 ORTHO05D001352 6.4e-14 82.4 232 37.5
BcaB08g35234 Brassica carinata HOM05D001443 ORTHO05D001352 1.4e-13 81.3 368 30.2
Carub.0004s0582 Capsella rubella HOM05D001443 ORTHO05D001352 1.4e-13 81.3 356 37.4
A04p20190 Brassica napus HOM05D001443 ORTHO05D001352 5.4e-13 79.3 337 38.0
BraA04t17598Z Brassica rapa HOM05D001443 ORTHO05D001352 5.4e-13 79.3 337 38.0
Zm00001eb205070 Zea mays HOM05D001443 ORTHO05D001352 5.4e-13 79.3 200 38.0
CDE06G2332 Ceratophyllum demersum HOM05D001443 ORTHO05D001352 6.0e-12 75.9 353 28.6
Aqoxy4G00509 Aquilegia oxysepala HOM05D001443 ORTHO05D001352 1.0e-11 75.1 394 31.2
SGA_v2.0_scaffold88G27221 Striga asiatica HOM05D001443 ORTHO05D001352 1.3e-11 74.7 339 34.2
Solyc08g065630.3 Solanum lycopersicum HOM05D002015 ORTHO05D001352 3.0e-11 73.6 287 41.8
Mapoly0006s0255 Marchantia polymorpha HOM05D001443 ORTHO05D001352 3.9e-11 73.2 252 32.9
THA.LOC104804517 Tarenaya hassleriana HOM05D001443 ORTHO05D001352 5.0e-11 72.8 360 36.9
HanXRQChr07g0189741 Helianthus annuus HOM05D001443 ORTHO05D001352 5.6e-10 69.3 333 32.1
Pp3c7_11410 Physcomitrium patens HOM05D001443 ORTHO05D001352 1.4e-08 64.7 229 32.8
THA.LOC104818574 Tarenaya hassleriana HOM05D001443 ORTHO05D001352 3.1e-08 63.5 388 30.9
PSO210G5804 Papaver somniferum HOM05D001443 ORTHO05D001352 8.9e-08 62.0 280 34.3
AL4G18040 Arabidopsis lyrata HOM05D001443 ORTHO05D001352 1.2e-07 61.6 257 33.1
Sopen08g019320 Solanum pennellii HOM05D000004 ORTHO05D000002 9.8e-07 58.5 148 48.6
SGA_v2.0_scaffold187G40246 Striga asiatica HOM05D001443 ORTHO05D001352 2.2e-06 57.4 336 31.5
Peaxi162Scf00925g00323 Petunia axillaris HOM05D000500 ORTHO05D000367 3.7e-06 56.6 123 39.8


User provided reference genes

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