Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022586 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 4.7e-97 357.8 177 100.0
Dinv42535 Davidia involucrata HOM05D005110 ORTHO05D006074 1.6e-73 279.6 178 79.2
Dinv22825 Davidia involucrata HOM05D005110 ORTHO05D006074 5.2e-72 274.6 178 78.7
Actinidia37076 Actinidia chinensis HOM05D005110 ORTHO05D006074 2.0e-63 246.1 175 73.7
Rhsim01G0204600 Rhododendron simsii HOM05D005110 ORTHO05D006074 1.3e-62 243.4 181 70.7
Actinidia25117 Actinidia chinensis HOM05D005110 ORTHO05D006074 4.1e-61 238.4 179 68.7
Hma1.2p1_0587F.1_g184070 Hydrangea macrophylla HOM05D005110 ORTHO05D006074 7.1e-61 237.7 176 67.6
Duzib170G1118 Durio zibethinus HOM05D005110 ORTHO05D006074 1.6e-57 226.5 179 64.8
Thecc.09G280200 Theobroma cacao HOM05D005110 ORTHO05D006074 6.8e-56 221.1 178 63.5
Duzib150G1383 Durio zibethinus HOM05D005110 ORTHO05D006074 8.9e-56 220.7 178 63.5
Duzib168G1438 Durio zibethinus HOM05D005110 ORTHO05D006074 2.0e-55 219.5 180 64.4
vmacro14345 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 3.4e-55 218.8 191 62.3
GSVIVG01036094001 Vitis vinifera HOM05D005110 ORTHO05D006074 3.4e-55 218.8 178 62.9
vmacro03324 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 7.6e-55 217.6 186 62.9
CSS0002660 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 8.3e-54 214.2 181 65.7
Oeu002365.1 Olea europaea HOM05D005110 ORTHO05D006074 8.3e-54 214.2 178 62.9
Oeu027156.1 Olea europaea HOM05D005110 ORTHO05D006074 1.9e-53 213.0 178 61.8
Rhsim13G0112900 Rhododendron simsii HOM05D005110 ORTHO05D006074 1.6e-52 209.9 187 63.1
MD11G1167600 Malus domestica HOM05D005110 ORTHO05D006074 2.7e-52 209.1 179 61.5
MD03G1148100 Malus domestica HOM05D005110 ORTHO05D006074 7.8e-52 207.6 179 60.9
Oeu035569.1 Olea europaea HOM05D005110 ORTHO05D006074 1.3e-51 206.8 174 60.3
FvH4_3g25370 Fragaria vesca HOM05D005110 ORTHO05D006074 5.1e-51 204.9 173 61.8
FAN21G3897 Fragaria x ananassa HOM05D005110 ORTHO05D006074 5.1e-51 204.9 173 61.8
Ciclev10029378m.g Citrus clementina HOM05D005110 ORTHO05D006074 6.6e-51 204.5 181 63.0
COL.COLO4_34021 Corchorus olitorius HOM05D005110 ORTHO05D006074 1.1e-50 203.8 178 62.4
FAN25G3715 Fragaria x ananassa HOM05D005110 ORTHO05D006074 1.5e-50 203.4 173 61.8
QL01p011992 Quercus lobata HOM05D005110 ORTHO05D006074 1.5e-50 203.4 178 57.9
ECA248G3565 Erigeron canadensis HOM05D005110 ORTHO05D006074 2.5e-50 202.6 172 58.7
FAN11G1413 Fragaria x ananassa HOM05D005110 ORTHO05D006074 2.5e-50 202.6 173 61.3
Glyma.12G091100 Glycine max HOM05D005110 ORTHO05D006074 2.5e-50 202.6 178 59.6
Lalb_Chr03g0028181 Lupinus albus HOM05D005110 ORTHO05D006074 9.6e-50 200.7 177 59.9
Lj3g0002892 Lotus japonicus HOM05D005110 ORTHO05D006074 1.6e-49 199.9 174 59.8
Nn2g14215 Nelumbo nucifera HOM05D005110 ORTHO05D006074 2.1e-49 199.5 173 57.8
DCAR_010338 Daucus carota HOM05D005110 ORTHO05D006074 2.8e-49 199.1 180 56.7
Glyma.11G182100 Glycine max HOM05D005110 ORTHO05D006074 3.6e-49 198.7 179 59.2
HanXRQChr13g0426031 Helianthus annuus HOM05D005110 ORTHO05D006074 4.7e-49 198.4 182 56.6
Prupe.6G134300 Prunus persica HOM05D005110 ORTHO05D006074 6.2e-49 198.0 172 61.0
Peaxi162Scf00091g00622 Petunia axillaris HOM05D005110 ORTHO05D006074 1.1e-48 197.2 181 59.7
Sopen06g030680 Solanum pennellii HOM05D005110 ORTHO05D006074 1.8e-48 196.4 179 59.8
Gohir.A05G079700 Gossypium hirsutum HOM05D005110 ORTHO05D006074 2.4e-48 196.1 174 58.6
PGSC0003DMG400005884 Solanum tuberosum HOM05D005110 ORTHO05D006074 4.0e-48 195.3 179 58.7
CAN.G919.35 Capsicum annuum HOM05D005110 ORTHO05D006074 8.9e-48 194.1 179 58.1
Lsat_1_v5_gn_1_59041 Lactuca sativa HOM05D005110 ORTHO05D006074 8.9e-48 194.1 168 57.7
CANSAT54G0919 Cannabis sativa HOM05D005110 ORTHO05D006074 1.2e-47 193.7 178 57.9
Phvul.011G095400 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 1.5e-47 193.4 173 59.0
Psat7g142160 Pisum sativum HOM05D005110 ORTHO05D006074 1.5e-47 193.4 177 56.5
Atru.chr3.3190 Acer truncatum HOM05D005110 ORTHO05D006074 2.6e-47 192.6 181 56.9
Potri.009G019300 Populus trichocarpa HOM05D005110 ORTHO05D006074 2.6e-47 192.6 180 57.8
Solyc06g074260.4 Solanum lycopersicum HOM05D005110 ORTHO05D006074 2.6e-47 192.6 179 59.2
Lalb_Chr01g0004911 Lupinus albus HOM05D005110 ORTHO05D006074 3.4e-47 192.2 177 57.1
Gohir.D05G082600 Gossypium hirsutum HOM05D005110 ORTHO05D006074 4.4e-47 191.8 174 57.5
Gorai.009G084200 Gossypium raimondii HOM05D005110 ORTHO05D006074 4.4e-47 191.8 174 57.5
TWI79G0870 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 4.4e-47 191.8 173 56.6
QL01p011978 Quercus lobata HOM05D005110 ORTHO05D006074 7.6e-47 191.0 178 55.1
TPR.G17227 Trifolium pratense HOM05D005110 ORTHO05D006074 7.6e-47 191.0 177 56.5
Cc01_g08910 Coffea canephora HOM05D005110 ORTHO05D006074 9.9e-47 190.7 178 56.2
Lalb_Chr19g0136401 Lupinus albus HOM05D005110 ORTHO05D006074 1.7e-46 189.9 175 58.3
Sabra09G0012800 Salix brachista HOM05D005110 ORTHO05D006074 1.7e-46 189.9 179 56.4
Glyma.13G315400 Glycine max HOM05D005110 ORTHO05D006074 2.9e-46 189.1 179 54.7
arahy.Tifrunner.gnm1.ann1.EYNG7S Arachis hypogaea HOM05D005110 ORTHO05D006074 4.9e-46 188.3 179 58.7
HanXRQChr01g0024471 Helianthus annuus HOM05D005110 ORTHO05D006074 4.9e-46 188.3 172 55.8
Phvul.005G122600 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 4.9e-46 188.3 175 54.9
MSTRG.21034 Avicennia marina HOM05D005110 ORTHO05D006074 1.4e-45 186.8 179 54.2
CiPaw.14G098700 Carya illinoinensis HOM05D005110 ORTHO05D006074 1.9e-45 186.4 179 56.4
Cfa009996 Carpinus fangiana HOM05D005110 ORTHO05D006074 7.1e-45 184.5 181 56.9
Lj3g0016581 Lotus japonicus HOM05D005110 ORTHO05D006074 9.3e-45 184.1 180 55.0
arahy.Tifrunner.gnm1.ann1.XFIF97 Arachis hypogaea HOM05D005110 ORTHO05D006074 1.2e-44 183.7 179 57.0
Manes.11G163300 Manihot esculenta HOM05D005110 ORTHO05D006074 1.2e-44 183.7 177 56.5
Nitab4.5_0005472g0010 Nicotiana tabacum HOM05D005110 ORTHO05D006074 3.5e-44 182.2 177 55.9
VMungo1127G0906 Vigna mungo HOM05D005110 ORTHO05D006074 1.3e-43 180.3 173 56.1
Psat5g259000 Pisum sativum HOM05D005110 ORTHO05D006074 3.0e-43 179.1 177 52.5
Medtr2g086680 Medicago truncatula HOM05D005110 ORTHO05D006074 5.1e-43 178.3 177 51.4
MBI17_g32417_MAGBIO Magnolia biondii HOM05D005110 ORTHO05D006074 1.5e-42 176.8 181 51.9
VMungo1080G1295 Vigna mungo HOM05D005110 ORTHO05D006074 1.9e-42 176.4 177 50.8
PGR102G3267 Punica granatum HOM05D005110 ORTHO05D006074 4.3e-42 175.3 181 55.8
CiPaw.13G134200 Carya illinoinensis HOM05D005110 ORTHO05D006074 5.6e-42 174.9 177 54.8
Eucgr.B03836 Eucalyptus grandis HOM05D005110 ORTHO05D006074 5.6e-42 174.9 189 50.8
TWI31G0848 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 5.6e-42 174.9 175 53.7
MSTRG.18766 Avicennia marina HOM05D005110 ORTHO05D006074 7.3e-42 174.5 182 52.2
Nitab4.5_0000937g0070 Nicotiana tabacum HOM05D005110 ORTHO05D006074 1.3e-41 173.7 178 54.5
Aqoxy4G02728 Aquilegia oxysepala HOM05D005110 ORTHO05D006074 2.8e-41 172.6 178 54.5
Sed0010097 Sechium edule HOM05D005110 ORTHO05D006074 5.3e-40 168.3 187 51.3
SGA_v2.0_scaffold22G09852 Striga asiatica HOM05D005110 ORTHO05D006074 6.9e-40 167.9 180 51.7
Hund18768 Selenicereus undatus HOM05D005110 ORTHO05D006074 9.0e-40 167.5 173 52.0
DCAR_012208 Daucus carota HOM05D005110 ORTHO05D006074 2.0e-39 166.4 181 51.4
SalBow6G3038 Salvia bowleyana HOM05D005110 ORTHO05D006074 9.9e-39 164.1 178 52.2
Sc06g0008710 Simmondsia chinensis HOM05D005110 ORTHO05D006074 1.3e-38 163.7 183 49.2
Cpa.g.sc195.13 Carica papaya HOM05D005110 ORTHO05D006074 4.9e-38 161.8 171 52.0
QL01p011973 Quercus lobata HOM05D005110 ORTHO05D006074 9.3e-37 157.5 178 48.3
arahy.Tifrunner.gnm1.ann1.NUG06Z Arachis hypogaea HOM05D005110 ORTHO05D006074 3.5e-36 155.6 180 48.3
arahy.Tifrunner.gnm1.ann1.GADS7N Arachis hypogaea HOM05D005110 ORTHO05D006074 1.0e-35 154.1 178 47.8
ClCG02G022270 Citrullus lanatus HOM05D005110 ORTHO05D006074 2.3e-35 152.9 177 49.2
Migut.D02434 Erythranthe guttata HOM05D005110 ORTHO05D006074 3.0e-35 152.5 158 52.5
ClCG01G012070 Citrullus lanatus HOM05D005110 ORTHO05D006074 6.6e-35 151.4 182 45.6
MELO3C004693.2 Cucumis melo HOM05D005110 ORTHO05D006074 1.4e-32 143.7 184 46.2
CsaV3_6G038400 Cucumis sativus L. HOM05D005110 ORTHO05D006074 2.4e-32 142.9 179 49.2
TAR623G0362 Trochodendron aralioides HOM05D005110 ORTHO05D006074 4.0e-32 142.1 132 58.3
CsaV3_1G014930 Cucumis sativus L. HOM05D005110 ORTHO05D006074 9.0e-32 141.0 170 43.5
CsaV3_1G015850 Cucumis sativus L. HOM05D005110 ORTHO05D006074 9.0e-32 141.0 170 43.5
MELO3C014504.2 Cucumis melo HOM05D005110 ORTHO05D006074 1.2e-31 140.6 172 49.4
THA.LOC104800521 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 3.8e-30 135.6 160 50.0
MSTRG.17701 Avicennia marina HOM05D005110 ORTHO05D006074 3.2e-29 132.5 177 48.6
Manes.04G002101 Manihot esculenta HOM05D005110 ORTHO05D006074 5.4e-29 131.7 117 55.6
TAR369G1010 Trochodendron aralioides HOM05D005110 ORTHO05D006074 1.6e-28 130.2 125 54.4
Hund20930 Selenicereus undatus HOM05D005110 ORTHO05D006074 6.0e-28 128.3 140 50.7
BcaB02g10088 Brassica carinata HOM05D005110 ORTHO05D006074 1.8e-27 126.7 165 44.8
CARHR119990 Cardamine hirsuta HOM05D005110 ORTHO05D006074 3.9e-27 125.6 171 42.7
Lj2P968T16 Lonicera japonica HOM05D005110 ORTHO05D006074 3.9e-27 125.6 123 54.5
BraA07t29533Z Brassica rapa HOM05D005110 ORTHO05D006074 8.7e-27 124.4 177 42.4
Thhalv10002110m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 1.1e-26 124.0 177 42.9
Actinidia35470 Actinidia chinensis HOM05D005110 ORTHO05D006074 1.5e-26 123.6 89 73.0
A07p18150 Brassica napus HOM05D005110 ORTHO05D006074 1.5e-26 123.6 177 42.4
AT5G22430 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 1.9e-26 123.2 170 44.1
Sp4g10180 Schrenkiella parvula HOM05D005110 ORTHO05D006074 1.9e-26 123.2 179 42.5
AL4G21340 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 2.5e-26 122.9 170 45.3
C04p24220 Brassica napus HOM05D005110 ORTHO05D006074 2.5e-26 122.9 177 41.8
BolC4t23920H Brassica oleracea HOM05D005110 ORTHO05D006074 2.5e-26 122.9 177 41.8
AT2G27385 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 3.3e-26 122.5 171 42.1
Carub.0004s0802 Capsella rubella HOM05D005110 ORTHO05D006074 5.6e-26 121.7 168 44.0
AL6G33450 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 9.6e-26 120.9 170 44.1
Thhalv10014830m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 9.6e-26 120.9 178 43.3
THA.LOC104810920 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 1.3e-25 120.6 171 44.4
BcaC02g10869 Brassica carinata HOM05D005110 ORTHO05D006074 6.2e-25 118.2 177 40.7
BcaB08g36432 Brassica carinata HOM05D000477 ORTHO05D006074 8.1e-25 117.9 178 42.1
BcaB05g22726 Brassica carinata HOM05D005110 ORTHO05D006074 1.1e-24 117.5 178 42.1
C02p10870 Brassica napus HOM05D005110 ORTHO05D006074 1.1e-24 117.5 165 43.0
Sp6g22820 Schrenkiella parvula HOM05D005110 ORTHO05D006074 1.4e-24 117.1 178 41.0
Carub.0006s2017 Capsella rubella HOM05D005110 ORTHO05D006074 1.8e-24 116.7 175 42.9
BraA02t05659Z Brassica rapa HOM05D005110 ORTHO05D006074 5.3e-24 115.2 179 42.5
vmacro14354 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 1.2e-23 114.0 110 60.0
BolC2t07157H Brassica oleracea HOM05D005110 ORTHO05D006074 1.5e-23 113.6 179 42.5
CARHR191100 Cardamine hirsuta HOM05D005110 ORTHO05D006074 2.0e-23 113.2 179 43.0
Aa31LG1G13130 Aethionema arabicum HOM05D005110 ORTHO05D006074 1.7e-22 110.2 179 39.1
BNapus_Darmor_BZH_scaffold_38p00660 Brassica napus HOM05D005110 ORTHO05D006074 3.8e-22 109.0 178 39.3
HPP92_005471 Vanilla planifolia HOM05D005110 ORTHO05D006074 4.9e-22 108.6 192 35.9
HPP92_011908 Vanilla planifolia HOM05D005110 ORTHO05D006074 8.7e-19 97.8 119 48.7
BcaC03g13883 Brassica carinata HOM05D005110 ORTHO05D006074 1.5e-18 97.1 141 41.1
ATR0580G107 Amborella trichopoda HOM05D005110 ORTHO05D006074 3.3e-18 95.9 190 35.8
Haze_23356 Corylus avellana HOM05D005110 ORTHO05D006074 5.7e-18 95.1 101 52.5
unitig_746.g26607 Utricularia gibba HOM05D005110 ORTHO05D006074 1.4e-16 90.5 168 34.5
TPR.G4458 Trifolium pratense HOM05D005110 ORTHO05D006074 2.5e-10 69.7 68 51.5
BolC9t58287H Brassica oleracea HOM05D005110 ORTHO05D006074 7.4e-10 68.2 178 31.5
C09p54160 Brassica napus HOM05D005110 ORTHO05D006074 4.8e-09 65.5 178 30.9
Os02g0535300 Oryza sativa ssp. japonica HOM05D005110 ORTHO05D006074 8.2e-09 64.7 173 33.5
Zm00001eb242880 Zea mays HOM05D005110 ORTHO05D006074 5.3e-08 62.0 204 30.9


User provided reference genes

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