Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022575 Camellia sinensis var. sinensis HOM05D005289 ORTHO05D006346 2.3e-79 298.9 155 100.0
Rhsim07G0056900 Rhododendron simsii HOM05D005289 ORTHO05D006346 3.9e-39 165.2 164 59.8
RhsimUnG0144200 Rhododendron simsii HOM05D005289 ORTHO05D006346 1.1e-38 163.7 166 59.0
vmacro13683 Vaccinium macrocarpon HOM05D005289 ORTHO05D006346 6.9e-36 154.5 163 59.5
Dinv09331 Davidia involucrata HOM05D005289 ORTHO05D006346 9.0e-36 154.1 184 53.3
Manes.16G000200 Manihot esculenta HOM05D005289 ORTHO05D006346 3.8e-34 148.7 136 59.6
TAR376G0259 Trochodendron aralioides HOM05D005289 ORTHO05D006346 2.4e-33 146.0 94 75.5
RcHm_v2.0_Chr4g0447301 Rosa chinensis HOM05D005289 ORTHO05D006346 3.2e-33 145.6 87 80.5
Dinv43423 Davidia involucrata HOM05D005289 ORTHO05D006346 5.4e-33 144.8 80 87.5
Gohir.A03G168400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 5.4e-33 144.8 128 60.2
THA.LOC104800596 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 7.1e-33 144.4 101 68.3
Gohir.D02G191500 Gossypium hirsutum HOM05D005289 ORTHO05D006346 9.3e-33 144.1 128 60.2
Gorai.005G214300 Gossypium raimondii HOM05D005289 ORTHO05D006346 9.3e-33 144.1 128 60.2
Manes.16G039900 Manihot esculenta HOM05D005289 ORTHO05D006346 1.2e-32 143.7 114 66.7
Duzib248G0326 Durio zibethinus HOM05D005289 ORTHO05D006346 1.6e-32 143.3 167 54.5
Manes.16G040000 Manihot esculenta HOM05D005289 ORTHO05D006346 1.6e-32 143.3 80 85.0
Cpa.g.sc248.7 Carica papaya HOM05D005289 ORTHO05D006346 3.5e-32 142.1 100 71.0
Lj9P634T19 Lonicera japonica HOM05D005289 ORTHO05D006346 3.5e-32 142.1 98 72.4
Prupe.1G352600 Prunus persica HOM05D005289 ORTHO05D006346 3.5e-32 142.1 98 70.4
CANSAT78G0451 Cannabis sativa HOM05D005289 ORTHO05D006346 7.9e-32 141.0 86 75.6
Actinidia31077 Actinidia chinensis HOM05D005289 ORTHO05D006346 1.3e-31 140.2 163 55.8
CiPaw.16G000100 Carya illinoinensis HOM05D005289 ORTHO05D006346 1.3e-31 140.2 141 56.7
Manes.14G174500 Manihot esculenta HOM05D005289 ORTHO05D006346 1.3e-31 140.2 83 78.3
MD16G1005600 Malus domestica HOM05D005289 ORTHO05D006346 1.8e-31 139.8 142 56.3
A02p40970 Brassica napus HOM05D005289 ORTHO05D006346 2.3e-31 139.4 149 53.7
FvH4_4g37381 Fragaria vesca HOM05D005289 ORTHO05D006346 2.3e-31 139.4 87 77.0
FAN07G0133 Fragaria x ananassa HOM05D005289 ORTHO05D006346 2.3e-31 139.4 110 64.5
FAN07G0378 Fragaria x ananassa HOM05D005289 ORTHO05D006346 2.3e-31 139.4 110 64.5
FAN17G1203 Fragaria x ananassa HOM05D005289 ORTHO05D006346 2.3e-31 139.4 87 77.0
MD13G1000200 Malus domestica HOM05D005289 ORTHO05D006346 2.3e-31 139.4 100 71.0
Nn7g38127 Nelumbo nucifera HOM05D005289 ORTHO05D006346 2.3e-31 139.4 80 82.5
PSO063G1455 Papaver somniferum HOM05D005289 ORTHO05D006346 2.3e-31 139.4 97 71.1
A03p03840 Brassica napus HOM05D002331 ORTHO05D002624 3.0e-31 139.0 116 60.3
BcaB01g05597 Brassica carinata HOM05D005289 ORTHO05D006346 3.9e-31 138.7 101 66.3
PGR142G2143 Punica granatum HOM05D005289 ORTHO05D006346 5.1e-31 138.3 87 73.6
C02p60860 Brassica napus HOM05D005289 ORTHO05D006346 6.7e-31 137.9 129 58.9
C03p04320 Brassica napus HOM05D005289 ORTHO05D006346 8.7e-31 137.5 143 53.8
BolC3t12965H Brassica oleracea HOM05D005289 ORTHO05D006346 8.7e-31 137.5 143 53.8
Cfa018663 Carpinus fangiana HOM05D005289 ORTHO05D006346 8.7e-31 137.5 78 83.3
BraA02t09045Z Brassica rapa HOM05D005289 ORTHO05D006346 1.1e-30 137.1 149 53.0
PSO782G1364 Papaver somniferum HOM05D005289 ORTHO05D006346 1.5e-30 136.7 99 67.7
Thecc.02G151000 Theobroma cacao HOM05D005289 ORTHO05D006346 1.9e-30 136.3 127 58.3
arahy.Tifrunner.gnm1.ann1.CPCZ9R Arachis hypogaea HOM05D005289 ORTHO05D006346 2.5e-30 136.0 152 53.9
BcaB01g05599 Brassica carinata HOM05D005289 ORTHO05D006346 2.5e-30 136.0 158 52.5
BolC2t12138H Brassica oleracea HOM05D005289 ORTHO05D006346 3.3e-30 135.6 129 58.9
Duzib132G0443 Durio zibethinus HOM05D005289 ORTHO05D006346 3.3e-30 135.6 126 57.9
TWI77G0922 Tripterygium wilfordii HOM05D005289 ORTHO05D006346 4.3e-30 135.2 167 50.3
VMungo0464G1452 Vigna mungo HOM05D005289 ORTHO05D006346 5.6e-30 134.8 100 65.0
Atru.chr11.6 Acer truncatum HOM05D005289 ORTHO05D006346 7.4e-30 134.4 79 79.7
HanXRQChr17g0563021 Helianthus annuus HOM05D005289 ORTHO05D006346 7.4e-30 134.4 152 53.3
Ciclev10017019m.g Citrus clementina HOM05D005289 ORTHO05D006346 1.3e-29 133.7 82 79.3
Eucgr.G02623 Eucalyptus grandis HOM05D005289 ORTHO05D006346 1.3e-29 133.7 79 81.0
Carub.0006s2124 Capsella rubella HOM05D005289 ORTHO05D006346 1.6e-29 133.3 85 74.1
QL01p000104 Quercus lobata HOM05D005289 ORTHO05D006346 2.1e-29 132.9 83 78.3
Aa31LG3G18150 Aethionema arabicum HOM05D005289 ORTHO05D006346 2.8e-29 132.5 142 52.8
BraA03t09731Z Brassica rapa HOM05D002331 ORTHO05D002624 2.8e-29 132.5 153 49.0
MBI03_g11910_MAGBIO Magnolia biondii HOM05D005289 ORTHO05D006346 2.8e-29 132.5 101 65.3
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 3.7e-29 132.1 167 47.3
DCAR_006352 Daucus carota HOM05D005289 ORTHO05D006346 6.2e-29 131.3 111 64.0
Lsat_1_v5_gn_4_31381 Lactuca sativa HOM05D005289 ORTHO05D006346 1.4e-28 130.2 116 56.0
SalBow6G0941 Salvia bowleyana HOM05D005289 ORTHO05D006346 1.8e-28 129.8 102 67.6
Aqoxy3G04359 Aquilegia oxysepala HOM05D005289 ORTHO05D006346 2.4e-28 129.4 150 52.0
Cc02_g28180 Coffea canephora HOM05D005289 ORTHO05D006346 2.4e-28 129.4 93 72.0
Sc06g0007700 Simmondsia chinensis HOM05D005289 ORTHO05D006346 3.1e-28 129.0 91 68.1
AT5G23440 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 5.3e-28 128.3 79 74.7
CARHR190070 Cardamine hirsuta HOM05D005289 ORTHO05D006346 5.3e-28 128.3 101 61.4
Lj2g0002318 Lotus japonicus HOM05D005289 ORTHO05D006346 9.0e-28 127.5 152 50.0
Sed0001576 Sechium edule HOM05D005289 ORTHO05D006346 9.0e-28 127.5 90 71.1
Phvul.004G000400 Phaseolus vulgaris HOM05D005289 ORTHO05D006346 1.2e-27 127.1 111 55.9
Thhalv10005472m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 1.5e-27 126.7 77 76.6
MELO3C011776.2 Cucumis melo HOM05D004444 ORTHO05D005246 2.0e-27 126.3 84 71.4
AL6G34730 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 2.6e-27 125.9 79 74.7
Thhalv10014787m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 2.6e-27 125.9 77 75.3
Hma1.2p1_2160F.1_g315560 Hydrangea macrophylla HOM05D005289 ORTHO05D006346 2.6e-27 125.9 174 49.4
CARHR204630 Cardamine hirsuta HOM05D005289 ORTHO05D006346 3.4e-27 125.6 78 74.4
ClCG11G012840 Citrullus lanatus HOM05D005289 ORTHO05D006346 3.4e-27 125.6 84 71.4
Migut.N01609 Erythranthe guttata HOM05D005289 ORTHO05D006346 3.4e-27 125.6 102 66.7
AL6G18870 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 4.5e-27 125.2 78 74.4
AT5G08410 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 4.5e-27 125.2 78 74.4
Carub.0006s0732 Capsella rubella HOM05D005289 ORTHO05D006346 5.8e-27 124.8 78 74.4
CsaV3_5G029240 Cucumis sativus L. HOM05D005289 ORTHO05D006346 7.6e-27 124.4 84 70.2
Sp2g23720 Schrenkiella parvula HOM05D005289 ORTHO05D006346 7.6e-27 124.4 78 73.1
Hund08591 Selenicereus undatus HOM05D005289 ORTHO05D006346 7.6e-27 124.4 105 58.1
Ca_04131_v3 Cicer arietinum L. HOM05D005289 ORTHO05D006346 1.0e-26 124.0 87 70.1
Glyma.05G000300 Glycine max HOM05D005289 ORTHO05D006346 1.0e-26 124.0 100 60.0
Oeu049492.1 Olea europaea HOM05D005289 ORTHO05D006346 1.0e-26 124.0 102 68.6
THA.LOC104819368 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 1.3e-26 123.6 73 78.1
CDE11G0284 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 2.2e-26 122.9 84 67.9
MSTRG.5030 Avicennia marina HOM05D005289 ORTHO05D006346 3.8e-26 122.1 102 67.6
Oeu049005.1 Olea europaea HOM05D005289 ORTHO05D006346 3.8e-26 122.1 94 68.1
Sed0008094 Sechium edule HOM05D005289 ORTHO05D006346 6.5e-26 121.3 81 70.4
Oeu006561.1 Olea europaea HOM05D005289 ORTHO05D006346 1.1e-25 120.6 102 63.7
Sp6g34530 Schrenkiella parvula HOM05D005289 ORTHO05D006346 1.4e-25 120.2 75 74.7
SGA_v2.0_scaffold24G10667 Striga asiatica HOM05D005289 ORTHO05D006346 1.4e-25 120.2 128 55.5
Glyma.19G000200 Glycine max HOM05D005289 ORTHO05D006346 1.9e-25 119.8 103 61.2
Medtr6g004100 Medicago truncatula HOM05D005289 ORTHO05D006346 1.9e-25 119.8 91 68.1
Solyc01g087520.3 Solanum lycopersicum HOM05D005289 ORTHO05D006346 2.5e-25 119.4 107 58.9
CDE05G2330 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 5.5e-25 118.2 82 67.1
Sopen01g034490 Solanum pennellii HOM05D005289 ORTHO05D006346 5.5e-25 118.2 107 58.9
Nitab4.5_0006228g0010 Nicotiana tabacum HOM05D005289 ORTHO05D006346 7.1e-25 117.9 107 59.8
Nitab4.5_0000707g0260 Nicotiana tabacum HOM05D005289 ORTHO05D006346 9.3e-25 117.5 107 59.8
ECA234G0076 Erigeron canadensis HOM05D005289 ORTHO05D006346 1.6e-24 116.7 152 43.4
PGSC0003DMG400006858 Solanum tuberosum HOM05D005289 ORTHO05D006346 1.6e-24 116.7 107 57.9
TPR.G25213 Trifolium pratense HOM05D005289 ORTHO05D006346 2.1e-24 116.3 88 69.3
HPP92_004266 Vanilla planifolia HOM05D005289 ORTHO05D006346 2.1e-24 116.3 102 59.8
MD10G1109200 Malus domestica HOM05D005289 ORTHO05D006346 3.5e-24 115.5 71 74.6
unitig_699.g19828 Utricularia gibba HOM05D005289 ORTHO05D006346 3.5e-24 115.5 102 63.7
Os02g0638300 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 7.9e-24 114.4 94 58.5
Gohir.A12G011400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 3.0e-23 112.5 133 50.4
CAN.G219.47 Capsicum annuum HOM05D005289 ORTHO05D006346 3.9e-23 112.1 100 59.0
Ah.15g093460 Amaranthus hybridus HOM05D005289 ORTHO05D006346 8.7e-23 110.9 160 42.5
AUR62028426 Chenopodium quinoa HOM05D005289 ORTHO05D006346 8.7e-23 110.9 77 66.2
AUR62038497 Chenopodium quinoa HOM05D005289 ORTHO05D006346 8.7e-23 110.9 77 67.5
Zm00001eb248360 Zea mays HOM05D005289 ORTHO05D006346 1.5e-22 110.2 155 46.5
Gohir.D12G011800 Gossypium hirsutum HOM05D005289 ORTHO05D006346 1.9e-22 109.8 133 49.6
Eucgr.J00323 Eucalyptus grandis HOM05D005289 ORTHO05D006346 2.5e-22 109.4 78 62.8
Gorai.008G011800 Gossypium raimondii HOM05D005289 ORTHO05D006346 2.5e-22 109.4 133 48.9
Zm00001eb185670 Zea mays HOM05D005289 ORTHO05D006346 1.3e-21 107.1 83 62.7
Sabra10G0198900 Salix brachista HOM05D005289 ORTHO05D006346 1.6e-21 106.7 84 65.5
Potri.010G255500 Populus trichocarpa HOM05D005289 ORTHO05D006346 2.1e-21 106.3 81 66.7
SEGI_30396 Sequoiadendron giganteum HOM05D005289 ORTHO05D006346 2.1e-21 106.3 87 60.9
MSTRG.28061 Avicennia marina HOM05D005289 ORTHO05D006346 2.8e-21 105.9 79 68.4
Os04g0528800 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 2.8e-21 105.9 154 44.8
Sabra08G0000100 Salix brachista HOM05D005289 ORTHO05D006346 1.4e-20 103.6 81 65.4
CDE01G0630 Ceratophyllum demersum HOM05D000556 ORTHO05D006346 1.8e-20 103.2 98 55.1
Potri.008G002200 Populus trichocarpa HOM05D005289 ORTHO05D006346 3.1e-20 102.4 81 64.2
PGR044G1862 Punica granatum HOM05D005289 ORTHO05D006346 6.9e-20 101.3 161 40.4
Zm00001eb075910 Zea mays HOM05D005289 ORTHO05D006346 2.0e-19 99.8 154 45.5
A06p34430 Brassica napus HOM05D005289 ORTHO05D006346 3.4e-19 99.0 79 67.1
BraA06t26372Z Brassica rapa HOM05D005289 ORTHO05D006346 3.4e-19 99.0 79 67.1
ATR0124G002 Amborella trichopoda HOM05D005289 ORTHO05D006346 5.8e-19 98.2 82 56.1
AagrBONN_evm.TU.Sc2ySwM_344.750 Anthoceros agrestis HOM05D005289 ORTHO05D006346 1.0e-18 97.4 78 60.3
SMO367G0363 Selaginella moellendorffii HOM05D005289 ORTHO05D006346 8.4e-18 94.4 77 55.8
Mapoly0005s0050 Marchantia polymorpha HOM05D005289 ORTHO05D006346 1.1e-17 94.0 89 49.4
Peaxi162Scf00019g00006 Petunia axillaris HOM05D005289 ORTHO05D006346 1.2e-16 90.5 80 58.8
EL10Ac1g01282 Beta vulgaris HOM05D005289 ORTHO05D006346 2.7e-16 89.4 90 54.4
Pp3c4_31020 Physcomitrium patens HOM05D005289 ORTHO05D006346 1.3e-15 87.0 89 52.8
AagrBONN_evm.TU.Sc2ySwM_368.462 Anthoceros agrestis HOM05D000595 ORTHO05D006346 1.8e-15 86.7 96 49.0
CBR_g32063 Chara braunii HOM05D005289 ORTHO05D006346 3.9e-15 85.5 106 49.1
Pp3c4_29510 Physcomitrium patens HOM05D005289 ORTHO05D006346 1.9e-14 83.2 89 50.6
Pp3c26_13800 Physcomitrium patens HOM05D005289 ORTHO05D006346 3.7e-13 79.0 89 50.6
Pp3c26_13840 Physcomitrium patens HOM05D005289 ORTHO05D006346 3.7e-13 79.0 89 50.6
Psat1g053320 Pisum sativum HOM05D005289 ORTHO05D006346 2.9e-10 69.3 93 44.1
Actinidia19406 Actinidia chinensis HOM05D005289 ORTHO05D006346 2.7e-08 62.8 122 44.3
CDE12G0350 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 2.7e-08 62.8 49 63.3
Ah.08g214580 Amaranthus hybridus HOM05D005289 ORTHO05D006346 8.8e-07 57.8 124 33.9
Cre16.g687294 Chlamydomonas reinhardtii HOM05D005289 ORTHO05D006346 4.3e-06 55.5 75 42.7


User provided reference genes

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