Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022573 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 2.0e-175 619.0 308 100.0
CSS0011944 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 1.1e-125 453.8 380 67.4
CSS0048709 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 1.1e-125 453.8 380 67.4
GSVIVG01020564001 Vitis vinifera HOM05D005273 ORTHO05D006195 2.4e-109 399.4 347 62.8
MSTRG.21306 Avicennia marina HOM05D005273 ORTHO05D006195 5.4e-109 398.3 360 60.3
Hma1.2p1_0002F.1_g002020 Hydrangea macrophylla HOM05D005273 ORTHO05D006195 1.0e-107 394.0 360 60.8
Solyc02g072105.1 Solanum lycopersicum HOM05D005273 ORTHO05D006195 1.3e-107 393.7 356 61.0
FvH4_6g26410 Fragaria vesca HOM05D005273 ORTHO05D006195 5.1e-107 391.7 357 59.9
QL08p039365 Quercus lobata HOM05D005273 ORTHO05D006195 5.1e-107 391.7 357 60.8
Migut.D02068 Erythranthe guttata HOM05D005273 ORTHO05D006195 6.6e-107 391.3 352 59.4
Nn1g06518 Nelumbo nucifera HOM05D005273 ORTHO05D006195 1.1e-106 390.6 359 59.6
Sopen02g021070 Solanum pennellii HOM05D005273 ORTHO05D006195 2.5e-106 389.4 349 61.3
Atru.chr6.2972 Acer truncatum HOM05D005273 ORTHO05D006195 1.3e-105 387.1 360 58.9
Prupe.3G131200 Prunus persica HOM05D005273 ORTHO05D006195 1.3e-105 387.1 357 59.9
CANSAT64G2205 Cannabis sativa HOM05D005273 ORTHO05D006195 2.8e-105 386.0 355 58.9
CAN.G411.45 Capsicum annuum HOM05D005273 ORTHO05D006195 2.8e-105 386.0 358 59.5
Gohir.A11G060000 Gossypium hirsutum HOM05D005273 ORTHO05D006195 2.8e-105 386.0 356 59.3
TWI59G0041 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 2.8e-105 386.0 358 58.7
RcHm_v2.0_Chr2g0127911 Rosa chinensis HOM05D005273 ORTHO05D006195 6.2e-105 384.8 358 58.9
Gorai.007G069300 Gossypium raimondii HOM05D005273 ORTHO05D006195 1.4e-104 383.6 356 59.0
Sabra07G0113000 Salix brachista HOM05D005273 ORTHO05D006195 1.4e-104 383.6 360 59.2
PGSC0003DMG400028417 Solanum tuberosum HOM05D005273 ORTHO05D006195 1.8e-104 383.3 349 59.9
HanXRQChr15g0466031 Helianthus annuus HOM05D005273 ORTHO05D006195 2.4e-104 382.9 356 57.6
Nn1g04120 Nelumbo nucifera HOM05D005273 ORTHO05D006195 3.1e-104 382.5 345 60.9
CDE08G0645 Ceratophyllum demersum HOM05D005273 ORTHO05D006195 5.3e-104 381.7 357 57.4
FAN05G3218 Fragaria x ananassa HOM05D005273 ORTHO05D006195 9.0e-104 380.9 346 60.1
MD09G1233100 Malus domestica HOM05D005273 ORTHO05D006195 1.2e-103 380.6 357 58.3
Cc06_g20460 Coffea canephora HOM05D005273 ORTHO05D006195 1.5e-103 380.2 359 59.3
Sc21g0002980 Simmondsia chinensis HOM05D005273 ORTHO05D006195 1.5e-103 380.2 357 57.1
Gohir.D11G064100 Gossypium hirsutum HOM05D005273 ORTHO05D006195 2.0e-103 379.8 345 60.0
Duzib264G0403 Durio zibethinus HOM05D005273 ORTHO05D006195 7.6e-103 377.9 356 58.4
Ciclev10015816m.g Citrus clementina HOM05D005273 ORTHO05D006195 9.9e-103 377.5 349 59.0
Sabra07G0117800 Salix brachista HOM05D005273 ORTHO05D006195 1.3e-102 377.1 377 56.5
Manes.02G045100 Manihot esculenta HOM05D005273 ORTHO05D006195 1.7e-102 376.7 349 58.2
vmacro12316 Vaccinium macrocarpon HOM05D005273 ORTHO05D006195 2.9e-102 375.9 448 50.0
Lsat_1_v5_gn_4_66761 Lactuca sativa HOM05D005273 ORTHO05D006195 3.8e-102 375.6 346 59.2
Glyma.12G114500 Glycine max HOM05D005273 ORTHO05D006195 4.9e-102 375.2 344 59.3
Potri.007G139700 Populus trichocarpa HOM05D005273 ORTHO05D006195 6.4e-102 374.8 349 59.3
DCAR_013064 Daucus carota HOM05D005273 ORTHO05D006195 8.4e-102 374.4 348 58.9
ECA246G2010 Erigeron canadensis HOM05D005273 ORTHO05D006195 1.4e-101 373.6 350 59.4
Eucgr.K01040 Eucalyptus grandis HOM05D005273 ORTHO05D006195 1.9e-101 373.2 356 56.7
Lj3g0011026 Lotus japonicus HOM05D005273 ORTHO05D006195 2.4e-101 372.9 343 58.6
ClCG10G015250 Citrullus lanatus HOM05D005273 ORTHO05D006195 4.2e-101 372.1 356 55.9
Haze_12807 Corylus avellana HOM05D005273 ORTHO05D006195 9.3e-101 370.9 360 58.1
VMungo1127G0137 Vigna mungo HOM05D005273 ORTHO05D006195 1.2e-100 370.5 352 57.4
COL.COLO4_33584 Corchorus olitorius HOM05D005273 ORTHO05D006195 2.1e-100 369.8 356 56.2
Phvul.011G119600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 2.1e-100 369.8 343 58.6
Lalb_Chr03g0027211 Lupinus albus HOM05D005273 ORTHO05D006195 2.7e-100 369.4 343 58.9
Sed0018091 Sechium edule HOM05D005273 ORTHO05D006195 2.7e-100 369.4 356 56.2
Duzib147G0196 Durio zibethinus HOM05D005273 ORTHO05D006195 3.5e-100 369.0 351 57.5
ATR0737G119 Amborella trichopoda HOM05D005273 ORTHO05D006195 4.6e-100 368.6 346 58.1
Dinv04937 Davidia involucrata HOM05D005273 ORTHO05D006195 4.6e-100 368.6 333 61.3
Rhsim06G0140600 Rhododendron simsii HOM05D005273 ORTHO05D006195 7.9e-100 367.9 467 48.2
A03p53890 Brassica napus HOM05D005273 ORTHO05D006195 1.0e-99 367.5 354 56.2
BraA03t14458Z Brassica rapa HOM05D005273 ORTHO05D006195 1.0e-99 367.5 354 56.2
arahy.Tifrunner.gnm1.ann1.EEV1KR Arachis hypogaea HOM05D005273 ORTHO05D006195 2.3e-99 366.3 351 57.5
BolC7t45723H Brassica oleracea HOM05D005273 ORTHO05D006195 2.3e-99 366.3 381 53.5
CANSAT64G2383 Cannabis sativa HOM05D005273 ORTHO05D006195 2.3e-99 366.3 346 57.5
Glyma.06G291600 Glycine max HOM05D005273 ORTHO05D006195 3.0e-99 365.9 343 58.0
THA.LOC104823543 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 3.9e-99 365.5 353 56.4
PSO782G4868 Papaver somniferum HOM05D005273 ORTHO05D006195 6.7e-99 364.8 359 56.3
CARHR229970 Cardamine hirsuta HOM05D005273 ORTHO05D006195 8.7e-99 364.4 378 53.4
arahy.Tifrunner.gnm1.ann1.RDE8QD Arachis hypogaea HOM05D005273 ORTHO05D006195 1.5e-98 363.6 351 57.0
C07p52300 Brassica napus HOM05D005273 ORTHO05D006195 1.5e-98 363.6 381 53.3
Phvul.010G107600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 1.5e-98 363.6 343 58.0
SalBow1G7481 Salvia bowleyana HOM05D005273 ORTHO05D006195 1.5e-98 363.6 356 56.5
Hund09652 Selenicereus undatus HOM05D005273 ORTHO05D006195 1.5e-98 363.6 350 55.7
Ca_18943_v3 Cicer arietinum L. HOM05D005273 ORTHO05D006195 1.9e-98 363.2 343 57.4
TAR627G0042 Trochodendron aralioides HOM05D005273 ORTHO05D006195 1.9e-98 363.2 375 54.4
Os01g0747500 Oryza sativa ssp. japonica HOM05D005273 ORTHO05D006195 2.5e-98 362.8 345 56.8
AUR62012902 Chenopodium quinoa HOM05D005273 ORTHO05D006195 5.6e-98 361.7 347 57.3
CsaV3_3G041260 Cucumis sativus L. HOM05D005273 ORTHO05D006195 7.4e-98 361.3 356 54.8
PGR142G4354 Punica granatum HOM05D005273 ORTHO05D006195 9.6e-98 360.9 345 57.1
arahy.Tifrunner.gnm1.ann1.891C6J Arachis hypogaea HOM05D005273 ORTHO05D006195 1.3e-97 360.5 347 57.6
Medtr4g078370 Medicago truncatula HOM05D005273 ORTHO05D006195 1.3e-97 360.5 343 57.1
Carub.0007s1834 Capsella rubella HOM05D005273 ORTHO05D006195 1.6e-97 360.1 355 54.6
PSO478G2492 Papaver somniferum HOM05D005273 ORTHO05D006195 2.1e-97 359.8 355 56.1
CiPaw.04G127500 Carya illinoinensis HOM05D005273 ORTHO05D006195 2.8e-97 359.4 315 61.9
SalBow1G1167 Salvia bowleyana HOM05D005273 ORTHO05D006195 2.8e-97 359.4 349 56.7
MELO3C009854.2 Cucumis melo HOM05D005273 ORTHO05D006195 4.8e-97 358.6 365 54.0
Thhalv10025474m.g Eutrema salsugineum HOM05D005273 ORTHO05D006195 8.1e-97 357.8 345 56.5
Aa31LG2G13370 Aethionema arabicum HOM05D005273 ORTHO05D006195 1.1e-96 357.5 353 54.1
BcaNung01659 Brassica carinata HOM05D005273 ORTHO05D006195 1.1e-96 357.5 356 55.3
Aqoxy6G00048 Aquilegia oxysepala HOM05D005273 ORTHO05D006195 1.8e-96 356.7 350 55.7
AL7G30590 Arabidopsis lyrata HOM05D005273 ORTHO05D006195 3.1e-96 355.9 354 54.5
Ah.11g045620 Amaranthus hybridus HOM05D005273 ORTHO05D006195 4.0e-96 355.5 346 55.8
AUR62011776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 4.0e-96 355.5 400 50.2
Psat7g169200 Pisum sativum HOM05D005273 ORTHO05D006195 4.0e-96 355.5 343 56.6
Carub.0001s3611 Capsella rubella HOM05D005273 ORTHO05D006195 5.3e-96 355.1 353 54.1
A01p14180 Brassica napus HOM05D005273 ORTHO05D006195 1.2e-95 354.0 353 54.1
Sp7g21020 Schrenkiella parvula HOM05D005273 ORTHO05D006195 2.6e-95 352.8 345 55.4
EL10Ac3g07435 Beta vulgaris HOM05D005273 ORTHO05D006195 3.4e-95 352.4 358 54.5
BraA01t01367Z Brassica rapa HOM05D005273 ORTHO05D006195 3.4e-95 352.4 353 53.8
AT4G22930 Arabidopsis thaliana HOM05D005273 ORTHO05D006195 9.9e-95 350.9 353 53.3
HPP92_004898 Vanilla planifolia HOM05D005273 ORTHO05D006195 9.9e-95 350.9 348 55.2
SGA_v2.0_scaffold25G10971 Striga asiatica HOM05D005273 ORTHO05D006195 1.7e-94 350.1 373 53.4
THA.LOC104814179 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 2.2e-94 349.7 343 56.6
arahy.Tifrunner.gnm1.ann1.YR7R6W Arachis hypogaea HOM05D005273 ORTHO05D006195 1.1e-93 347.4 339 56.9
Zm00001eb153030 Zea mays HOM05D005273 ORTHO05D006195 1.2e-92 344.0 345 55.4
unitig_899.g15313 Utricularia gibba HOM05D005273 ORTHO05D006195 3.5e-92 342.4 352 54.0
TWI18G0085 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 1.3e-91 340.5 339 56.3
BcaC09g51057 Brassica carinata HOM05D000022 ORTHO05D006195 2.3e-91 339.7 364 50.8
MBI07_g30188_MAGBIO Magnolia biondii HOM05D005273 ORTHO05D006195 3.0e-91 339.3 326 57.1
SHI10390 Sapria himalayana HOM05D005273 ORTHO05D006195 9.6e-90 334.3 347 52.4
Cpa.g.sc83.46 Carica papaya HOM05D005273 ORTHO05D006195 6.5e-86 321.6 328 56.1
Lj5g0005541 Lotus japonicus HOM05D005273 ORTHO05D006195 5.1e-83 312.0 306 56.5
SMO347G0496 Selaginella moellendorffii HOM05D005273 ORTHO05D006195 4.8e-81 305.4 348 52.3
C01p17440 Brassica napus HOM05D000022 ORTHO05D006195 3.1e-80 302.8 359 48.7
Mapoly0001s0029 Marchantia polymorpha HOM05D005273 ORTHO05D006195 4.1e-80 302.4 341 49.9
Pp3c13_8930 Physcomitrium patens HOM05D005273 ORTHO05D006195 1.7e-78 297.0 340 48.2
CBR_g21229 Chara braunii HOM05D005273 ORTHO05D006195 2.8e-73 279.6 325 50.2
CSS0013056 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 1.0e-70 271.2 344 51.5
Cre11.g467550 Chlamydomonas reinhardtii HOM05D005273 ORTHO05D006195 1.7e-70 270.4 343 45.2
Thecc.K0007100 Theobroma cacao HOM05D005273 ORTHO05D006195 9.4e-69 264.6 236 60.2
Cfa014627 Carpinus fangiana HOM05D005273 ORTHO05D006195 4.7e-68 262.3 356 46.9
Nitab4.5_0000437g0040 Nicotiana tabacum HOM05D005273 ORTHO05D006195 1.1e-66 257.7 292 53.1
Thecc.01G150900 Theobroma cacao HOM05D005273 ORTHO05D006195 3.3e-66 256.1 272 54.4
Nitab4.5_0006070g0020 Nicotiana tabacum HOM05D005273 ORTHO05D006195 9.7e-66 254.6 292 52.7
AUR62011723 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.0e-62 244.6 212 60.4
AUR62024621 Chenopodium quinoa HOM05D005273 ORTHO05D006195 5.0e-62 242.3 211 59.7
BolC1t01684H Brassica oleracea HOM05D005273 ORTHO05D006195 1.4e-61 240.7 210 59.0
PRCOL_00003989 Prasinoderma coloniale HOM05D005273 ORTHO05D006195 1.7e-57 227.3 338 39.9
MCO16G183 Micromonas commoda HOM05D005273 ORTHO05D006195 2.4e-56 223.4 348 37.6
Actinidia11084 Actinidia chinensis HOM05D005273 ORTHO05D006195 9.1e-56 221.5 176 67.0
AagrBONN_evm.TU.Sc2ySwM_117.50 Anthoceros agrestis HOM05D005273 ORTHO05D006195 3.5e-55 219.5 247 51.8
Haze_27262 Corylus avellana HOM05D005273 ORTHO05D006195 1.3e-54 217.6 347 38.6
FAN02G4311 Fragaria x ananassa HOM05D005273 ORTHO05D006195 1.1e-53 214.5 202 58.4
Lj1C718T2 Lonicera japonica HOM05D005273 ORTHO05D006195 2.0e-50 203.8 192 58.9
QL08p039454 Quercus lobata HOM05D005273 ORTHO05D006195 1.2e-47 194.5 200 56.5
Atru.chr6.2977 Acer truncatum HOM05D005273 ORTHO05D006195 2.6e-42 176.8 189 53.4
Peaxi162Scf00112g00113 Petunia axillaris HOM05D005273 ORTHO05D006195 1.0e-35 154.8 125 64.8
SEGI_10566 Sequoiadendron giganteum HOM05D005273 ORTHO05D006195 1.5e-34 151.0 169 50.3
Atru.chr6.2976 Acer truncatum HOM05D005273 ORTHO05D006195 3.5e-31 139.8 88 76.1
TPR.G7356 Trifolium pratense HOM05D005273 ORTHO05D006195 4.5e-31 139.4 94 72.3
Oeu007130.1 Olea europaea HOM05D005273 ORTHO05D006195 1.8e-27 127.5 293 32.4
Lj1A718G26 Lonicera japonica HOM05D005273 ORTHO05D006195 1.5e-26 124.4 94 66.0
Peaxi162Scf00112g00110 Petunia axillaris HOM05D005273 ORTHO05D006195 2.0e-26 124.0 94 63.8
EL10Ac9g21222 Beta vulgaris HOM05D005273 ORTHO05D006195 6.2e-20 102.4 266 32.7
AUR62041872 Chenopodium quinoa HOM05D005273 ORTHO05D006195 8.3e-17 92.0 89 55.1
Lj3g0005703 Lotus japonicus HOM05D002777 ORTHO05D001516 9.2e-16 88.6 81 60.5
BcaNung01011 Brassica carinata HOM05D005273 ORTHO05D006195 5.6e-13 79.3 216 31.9
Cfa022577 Carpinus fangiana HOM05D005273 ORTHO05D006195 1.1e-08 65.1 217 30.9


User provided reference genes

Program Settings