Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022552 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 0.0e+00 1617.1 859 100.0
Actinidia21950 Actinidia chinensis HOM05D003622 ORTHO05D004453 0.0e+00 1231.5 862 77.0
Dinv41474 Davidia involucrata HOM05D003622 ORTHO05D004453 0.0e+00 1228.4 831 79.2
Dinv36478 Davidia involucrata HOM05D003622 ORTHO05D004453 0.0e+00 1192.6 865 75.0
vmacro07722 Vaccinium macrocarpon HOM05D003622 ORTHO05D004453 0.0e+00 1075.8 801 72.7
Rhsim01G0061400 Rhododendron simsii HOM05D003622 ORTHO05D004453 9.9e-310 1066.6 1008 61.3
vmacro06154 Vaccinium macrocarpon HOM05D003622 ORTHO05D004453 1.4e-303 1046.2 843 69.2
Rhsim03G0251600 Rhododendron simsii HOM05D003622 ORTHO05D004453 1.3e-301 1039.6 857 69.1
Cfa003424 Carpinus fangiana HOM05D003622 ORTHO05D004453 9.0e-295 1016.9 841 65.8
GSVIVG01015594001 Vitis vinifera HOM05D003622 ORTHO05D004453 1.3e-293 1013.1 860 65.1
Duzib168G1318 Durio zibethinus HOM05D003622 ORTHO05D004453 3.9e-290 1001.5 861 64.0
Thecc.09G132400 Theobroma cacao HOM05D003622 ORTHO05D004453 1.3e-285 986.5 860 63.7
Gohir.A08G088500 Gossypium hirsutum HOM05D003622 ORTHO05D004453 1.2e-283 979.9 860 62.4
Gorai.013G235300 Gossypium raimondii HOM05D003622 ORTHO05D004453 7.4e-281 970.7 859 61.6
COL.COLO4_35161 Corchorus olitorius HOM05D003622 ORTHO05D004453 1.6e-280 969.5 867 62.7
CiPaw.03G248700 Carya illinoinensis HOM05D003622 ORTHO05D004453 1.8e-279 966.1 874 62.6
Glyma.13G160300 Glycine max HOM05D003622 ORTHO05D004453 2.2e-277 959.1 863 60.4
Gorai.010G061100 Gossypium raimondii HOM05D003622 ORTHO05D004453 8.5e-277 957.2 862 62.5
Ciclev10007427m.g Citrus clementina HOM05D003622 ORTHO05D004453 1.9e-276 956.1 866 61.4
Manes.14G116100 Manihot esculenta HOM05D003622 ORTHO05D004453 2.5e-276 955.7 872 61.7
VMungo1215G2226 Vigna mungo HOM05D003622 ORTHO05D004453 5.5e-276 954.5 861 59.7
Glyma.17G111200 Glycine max HOM05D003622 ORTHO05D004453 7.2e-276 954.1 861 60.0
QL02p089888 Quercus lobata HOM05D003622 ORTHO05D004453 1.4e-274 949.9 980 56.8
TAR625G0175 Trochodendron aralioides HOM05D003622 ORTHO05D004453 1.8e-274 949.5 859 61.8
Gohir.D06G052700 Gossypium hirsutum HOM05D003622 ORTHO05D004453 1.1e-273 946.8 862 61.9
Peaxi162Scf00088g01327 Petunia axillaris HOM05D003622 ORTHO05D004453 1.1e-273 946.8 846 61.8
CiPaw.04G174900 Carya illinoinensis HOM05D003622 ORTHO05D004453 3.3e-273 945.3 841 61.8
Gohir.A06G053800 Gossypium hirsutum HOM05D003622 ORTHO05D004453 1.3e-272 943.3 862 61.9
Potri.018G126100 Populus trichocarpa HOM05D003622 ORTHO05D004453 1.3e-272 943.3 873 61.3
Manes.06G047000 Manihot esculenta HOM05D003622 ORTHO05D004453 2.2e-272 942.6 844 62.6
arahy.Tifrunner.gnm1.ann1.HD4WN1 Arachis hypogaea HOM05D003622 ORTHO05D004453 6.3e-272 941.0 866 59.6
Nitab4.5_0002008g0030 Nicotiana tabacum HOM05D003622 ORTHO05D004453 1.8e-271 939.5 853 61.3
Phvul.003G169000 Phaseolus vulgaris HOM05D003622 ORTHO05D004453 3.1e-271 938.7 861 58.9
Gorai.004G107500 Gossypium raimondii HOM05D003622 ORTHO05D004453 6.9e-271 937.6 861 60.9
Nitab4.5_0003393g0070 Nicotiana tabacum HOM05D003622 ORTHO05D004453 6.9e-271 937.6 853 61.3
Lj4g0015305 Lotus japonicus HOM05D003622 ORTHO05D004453 1.0e-269 933.7 866 58.1
CSS0014966 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 1.3e-269 933.3 672 76.2
Sabra18G0107100 Salix brachista HOM05D003622 ORTHO05D004453 1.7e-269 932.9 871 60.4
Lalb_Chr13g0301561 Lupinus albus HOM05D003622 ORTHO05D004453 2.9e-269 932.2 866 59.4
Gohir.D08G099700 Gossypium hirsutum HOM05D003622 ORTHO05D004453 6.5e-269 931.0 835 62.3
Gohir.A13G200800 Gossypium hirsutum HOM05D003622 ORTHO05D004453 3.2e-268 928.7 858 59.6
Hma1.2p1_0343F.1_g130930 Hydrangea macrophylla HOM05D003622 ORTHO05D004453 1.8e-266 922.9 716 70.3
CANSAT11G0379 Cannabis sativa HOM05D003622 ORTHO05D004453 3.9e-266 921.8 859 60.7
Lalb_Chr12g0198231 Lupinus albus HOM05D003622 ORTHO05D004453 2.6e-265 919.1 859 58.8
CSS0042071 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 7.4e-265 917.5 662 76.1
PGSC0003DMG400030907 Solanum tuberosum HOM05D003622 ORTHO05D004453 4.8e-264 914.8 844 60.7
arahy.Tifrunner.gnm1.ann1.DJE2D0 Arachis hypogaea HOM05D003622 ORTHO05D004453 6.3e-264 914.4 907 56.7
Potri.006G065600 Populus trichocarpa HOM05D003622 ORTHO05D004453 8.2e-264 914.1 869 60.4
MELO3C010313.2 Cucumis melo HOM05D003622 ORTHO05D004453 2.9e-261 905.6 864 59.3
Sopen07g003790 Solanum pennellii HOM05D003622 ORTHO05D004453 6.5e-261 904.4 844 59.7
Solyc07g007890.3 Solanum lycopersicum HOM05D003622 ORTHO05D004453 1.1e-260 903.7 844 59.8
CsaV3_1G026740 Cucumis sativus L. HOM05D003622 ORTHO05D004453 7.2e-260 901.0 864 58.9
CAN.G1266.4 Capsicum annuum HOM05D003622 ORTHO05D004453 1.4e-258 896.7 846 59.2
Medtr4g115350 Medicago truncatula HOM05D003622 ORTHO05D004453 1.4e-258 896.7 865 57.2
Actinidia07317 Actinidia chinensis HOM05D003622 ORTHO05D004453 5.2e-258 894.8 720 70.1
Atru.chr7.1951 Acer truncatum HOM05D003622 ORTHO05D004453 6.7e-258 894.4 726 66.3
RcHm_v2.0_Chr2g0087611 Rosa chinensis HOM05D003622 ORTHO05D004453 1.1e-255 887.1 840 58.6
Sed0001481 Sechium edule HOM05D003622 ORTHO05D004453 1.8e-255 886.3 863 58.7
MSTRG.26437 Avicennia marina HOM05D003622 ORTHO05D004453 2.4e-255 885.9 844 59.1
AUR62011177 Chenopodium quinoa HOM05D003622 ORTHO05D004453 3.1e-255 885.6 862 57.7
SalBow1G3694 Salvia bowleyana HOM05D003622 ORTHO05D004453 4.1e-255 885.2 844 59.2
AUR62013307 Chenopodium quinoa HOM05D003622 ORTHO05D004453 7.0e-255 884.4 862 57.5
Cc06_g08050 Coffea canephora HOM05D003622 ORTHO05D004453 1.6e-254 883.2 844 60.1
Lalb_Chr07g0179261 Lupinus albus HOM05D003622 ORTHO05D004453 2.0e-254 882.9 865 56.5
TWI63G1810 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 2.0e-254 882.9 870 57.7
TWI34G1661 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 7.7e-254 880.9 860 57.7
FvH4_1g02580 Fragaria vesca HOM05D003622 ORTHO05D004453 3.8e-253 878.6 860 57.3
FAN19G0217 Fragaria x ananassa HOM05D003622 ORTHO05D004453 1.1e-252 877.1 860 57.1
TWI32G0590 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 1.9e-252 876.3 865 57.2
FAN28G0611 Fragaria x ananassa HOM05D003622 ORTHO05D004453 8.0e-251 870.9 842 57.6
Prupe.7G248800 Prunus persica HOM05D003622 ORTHO05D004453 1.8e-250 869.8 840 58.7
Eucgr.C01387 Eucalyptus grandis HOM05D003622 ORTHO05D004453 3.0e-250 869.0 832 59.1
FAN23G2517 Fragaria x ananassa HOM05D003622 ORTHO05D004453 5.2e-250 868.2 860 57.1
Lalb_Chr11g0072261 Lupinus albus HOM05D003622 ORTHO05D004453 6.7e-250 867.8 869 55.5
Duzib187G1700 Durio zibethinus HOM05D003622 ORTHO05D004453 2.0e-249 866.3 858 58.0
Sc08g0006260 Simmondsia chinensis HOM05D003622 ORTHO05D004453 9.7e-249 864.0 858 56.2
MD15G1166400 Malus domestica HOM05D003622 ORTHO05D004453 1.3e-248 863.6 860 56.9
Sabra06G0047800 Salix brachista HOM05D003622 ORTHO05D004453 1.8e-247 859.8 984 53.0
Psat0s188g0040 Pisum sativum HOM05D003622 ORTHO05D004453 2.4e-247 859.4 866 55.9
MD02G1023300 Malus domestica HOM05D003622 ORTHO05D004453 4.1e-247 858.6 849 57.1
EL10Ac8g18721 Beta vulgaris HOM05D003622 ORTHO05D004453 7.7e-246 854.4 861 56.4
Hund09284 Selenicereus undatus HOM05D003622 ORTHO05D004453 1.7e-245 853.2 864 56.0
PSO170G2238 Papaver somniferum HOM05D003622 ORTHO05D004453 2.9e-245 852.4 834 57.8
PSO017G7291 Papaver somniferum HOM05D003622 ORTHO05D004453 9.4e-244 847.4 833 57.7
SalBow6G3081 Salvia bowleyana HOM05D003622 ORTHO05D004453 3.6e-243 845.5 837 58.1
SGA_v2.0_scaffold464G52002 Striga asiatica HOM05D003622 ORTHO05D004453 3.5e-238 828.9 826 57.7
Hund26549 Selenicereus undatus HOM05D003622 ORTHO05D004453 7.7e-238 827.8 860 54.8
DCAR_020889 Daucus carota HOM05D003622 ORTHO05D004453 8.6e-237 824.3 848 56.1
DCAR_009323 Daucus carota HOM05D003622 ORTHO05D004453 1.8e-234 816.6 894 54.7
Ca_06943_v3 Cicer arietinum L. HOM05D003622 ORTHO05D004453 5.2e-234 815.1 822 56.6
TPR.G24803 Trifolium pratense HOM05D003622 ORTHO05D004453 1.5e-233 813.5 857 54.8
Migut.K00423 Erythranthe guttata HOM05D003622 ORTHO05D004453 4.4e-233 812.0 842 56.9
Sed0008371 Sechium edule HOM05D003622 ORTHO05D004453 1.4e-231 807.0 859 55.2
Aqoxy7G03634 Aquilegia oxysepala HOM05D003622 ORTHO05D004453 4.5e-230 802.0 860 54.3
PGR102G2297 Punica granatum HOM05D003622 ORTHO05D004453 8.6e-229 797.7 858 53.8
Lj7C432T7 Lonicera japonica HOM05D003622 ORTHO05D004453 5.2e-226 788.5 1000 49.7
SGA_v2.0_scaffold63G21826 Striga asiatica HOM05D003622 ORTHO05D004453 9.8e-225 784.3 856 54.8
FAN26G1654 Fragaria x ananassa HOM05D003622 ORTHO05D004453 4.6e-222 775.4 945 49.5
ATR0800G088 Amborella trichopoda HOM05D003622 ORTHO05D004453 6.6e-221 771.5 864 52.2
Cpa.g.sc46.43 Carica papaya HOM05D003622 ORTHO05D004453 1.5e-217 760.4 655 63.7
Gohir.D13G206400 Gossypium hirsutum HOM05D003622 ORTHO05D004453 9.8e-217 757.7 859 51.1
Duzib150G0473 Durio zibethinus HOM05D003622 ORTHO05D004453 9.2e-215 751.1 861 51.5
Migut.J01215 Erythranthe guttata HOM05D003622 ORTHO05D004453 2.9e-208 729.6 850 52.5
Nn2g12120 Nelumbo nucifera HOM05D003622 ORTHO05D004453 2.1e-206 723.4 679 60.7
THA.LOC104808966 Tarenaya hassleriana HOM05D003622 ORTHO05D004453 1.0e-205 721.1 871 50.3
CDE03G0113 Ceratophyllum demersum HOM05D003622 ORTHO05D004453 2.3e-205 719.9 840 51.8
HanXRQChr12g0356631 Helianthus annuus HOM05D003622 ORTHO05D004453 3.6e-203 712.6 850 50.8
HanXRQChr10g0315861 Helianthus annuus HOM05D003622 ORTHO05D004453 1.1e-202 711.1 839 50.7
Thhalv10003437m.g Eutrema salsugineum HOM05D003622 ORTHO05D004453 1.3e-200 704.1 849 49.8
CDE06G0586 Ceratophyllum demersum HOM05D003622 ORTHO05D004453 6.0e-198 695.3 837 51.1
CARHR217470 Cardamine hirsuta HOM05D003622 ORTHO05D004453 8.7e-197 691.4 852 48.2
Carub.0007s3125 Capsella rubella HOM05D003622 ORTHO05D004453 3.3e-196 689.5 853 47.8
ECA234G4065 Erigeron canadensis HOM05D003622 ORTHO05D004453 9.6e-196 688.0 843 50.1
MBI13_g37002_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 9.6e-196 688.0 645 60.3
CSS0037660 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 1.6e-195 687.2 445 81.8
BcaB06g26937 Brassica carinata HOM05D003622 ORTHO05D004453 1.1e-194 684.5 851 48.2
Sp7g06890 Schrenkiella parvula HOM05D003622 ORTHO05D004453 9.0e-194 681.4 854 48.8
A04p09700 Brassica napus HOM05D003622 ORTHO05D004453 4.4e-193 679.1 828 48.9
C04p43220 Brassica napus HOM05D003622 ORTHO05D004453 5.8e-193 678.7 829 49.1
Lsat_1_v5_gn_5_91841 Lactuca sativa HOM05D003622 ORTHO05D004453 1.7e-192 677.2 837 50.5
TAR636G0579 Trochodendron aralioides HOM05D003622 ORTHO05D004453 1.4e-191 674.1 591 63.6
ClCG06G011530 Citrullus lanatus HOM05D003622 ORTHO05D004453 5.4e-191 672.2 658 58.4
Oeu056946.1 Olea europaea HOM05D003622 ORTHO05D004453 7.1e-191 671.8 649 58.7
BcaB02g08053 Brassica carinata HOM05D003622 ORTHO05D004453 7.8e-190 668.3 850 48.5
Aa31LG9G18070 Aethionema arabicum HOM05D003622 ORTHO05D004453 1.0e-189 667.9 854 49.4
AL7G44290 Arabidopsis lyrata HOM05D003622 ORTHO05D004453 3.9e-189 666.0 852 47.3
Ah.09g224810 Amaranthus hybridus HOM05D003622 ORTHO05D004453 5.8e-185 652.1 857 47.8
THA.LOC104826553 Tarenaya hassleriana HOM05D003622 ORTHO05D004453 7.6e-185 651.7 862 48.6
AT5G35430 Arabidopsis thaliana HOM05D003622 ORTHO05D004453 7.1e-183 645.2 852 46.0
Oeu052762.1 Olea europaea HOM05D003622 ORTHO05D004453 3.7e-179 632.9 649 57.0
Carub.0001s0938 Capsella rubella HOM05D003622 ORTHO05D004453 6.0e-174 615.5 853 45.1
unitig_0.g2718 Utricularia gibba HOM05D003622 ORTHO05D004453 1.9e-172 610.5 879 45.3
SEGI_29075 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 9.0e-170 601.7 866 43.1
Os09g0123100 Oryza sativa ssp. japonica HOM05D003622 ORTHO05D004453 5.8e-169 599.0 829 44.5
Zm00001eb308130 Zea mays HOM05D003622 ORTHO05D004453 8.4e-168 595.1 839 44.5
Zm00001eb095440 Zea mays HOM05D003622 ORTHO05D004453 2.0e-161 573.9 835 42.9
Oeu055962.1 Olea europaea HOM05D003622 ORTHO05D004453 3.8e-152 543.1 778 46.5
BcaC02g09474 Brassica carinata HOM05D003622 ORTHO05D004453 7.7e-145 518.8 829 42.6
Mapoly0024s0101 Marchantia polymorpha HOM05D003622 ORTHO05D004453 8.0e-142 508.8 886 38.4
HPP92_000465 Vanilla planifolia HOM05D003622 ORTHO05D004453 2.4e-138 497.3 553 50.6
BolC4t25899H Brassica oleracea HOM05D003622 ORTHO05D004453 9.8e-132 475.3 577 50.6
BraA04t16629Z Brassica rapa HOM05D003622 ORTHO05D004453 2.2e-131 474.2 576 50.3
Pp3c9_20660 Physcomitrium patens HOM05D003622 ORTHO05D004453 5.2e-125 453.0 854 36.9
Pp3c15_17690 Physcomitrium patens HOM05D003622 ORTHO05D004453 7.7e-121 439.1 838 37.4
SHI22466 Sapria himalayana HOM05D003622 ORTHO05D004453 7.7e-121 439.1 687 44.4
unitig_748.g7167 Utricularia gibba HOM05D003622 ORTHO05D004453 5.2e-117 426.4 471 51.6
SMO351G0297 Selaginella moellendorffii HOM05D003622 ORTHO05D004453 2.0e-116 424.5 838 36.5
BcaC02g09475 Brassica carinata HOM05D003622 ORTHO05D004453 8.3e-115 419.1 790 37.3
Oeu052177.3 Olea europaea HOM05D003622 ORTHO05D004453 3.4e-100 370.5 829 36.6
MBI13_g02370_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 6.9e-77 293.1 460 45.2
CBR_g27935 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-66 258.8 697 30.7
unitig_748.g7166 Utricularia gibba HOM05D003622 ORTHO05D004453 1.8e-61 241.9 339 46.3
Actinidia38718 Actinidia chinensis HOM05D003622 ORTHO05D004453 6.5e-51 206.8 268 48.5
BolC4t25898H Brassica oleracea HOM05D003622 ORTHO05D004453 4.2e-50 204.1 313 44.4
MBI13_g36807_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 7.2e-50 203.4 124 77.4
SEGI_39442 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 1.6e-46 192.2 341 38.7
TAR383G0647 Trochodendron aralioides HOM05D003622 ORTHO05D004453 1.6e-46 192.2 191 55.0
A04p09720 Brassica napus HOM05D003622 ORTHO05D004453 2.2e-43 181.8 256 46.9
BraA04t16634Z Brassica rapa HOM05D003622 ORTHO05D004453 4.2e-42 177.6 223 48.0
C04p43210 Brassica napus HOM05D003622 ORTHO05D004453 3.6e-41 174.5 192 50.5
Cpa.g.sc46.42 Carica papaya HOM05D003622 ORTHO05D004453 1.4e-40 172.6 151 60.3
TAR636G1395 Trochodendron aralioides HOM05D007419 ORTHO05D009327 4.3e-39 167.5 136 61.8
Actinidia38717 Actinidia chinensis HOM05D003622 ORTHO05D004453 1.8e-37 162.2 117 75.2
AagrBONN_evm.TU.Sc2ySwM_344.2256 Anthoceros agrestis HOM05D003622 ORTHO05D004453 1.8e-37 162.2 307 35.2
HPP92_000473 Vanilla planifolia HOM05D003622 ORTHO05D004453 1.5e-36 159.1 240 40.8
Haze_25503 Corylus avellana HOM05D003622 ORTHO05D004453 5.1e-32 144.1 114 64.0
AagrBONN_evm.TU.Sc2ySwM_344.2257 Anthoceros agrestis HOM05D003622 ORTHO05D004453 9.7e-31 139.8 203 37.4
ClCG06G011520 Citrullus lanatus HOM05D003622 ORTHO05D004453 1.3e-22 112.8 110 55.5
SEGI_04910 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 1.3e-19 102.8 153 40.5
ClCG06G011510 Citrullus lanatus HOM05D003622 ORTHO05D004453 1.1e-18 99.8 109 52.3
SEGI_12874 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 1.5e-18 99.4 72 62.5
MBI13_g48239_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 2.1e-17 95.5 154 39.0
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 2.1e-17 95.5 63 69.8
Potri.004G126780 Populus trichocarpa HOM05D000030 ORTHO05D000009 1.4e-16 92.8 100 51.0
Potri.004G126740 Populus trichocarpa HOM05D000030 ORTHO05D000009 1.2e-15 89.7 100 50.0
SHI22468 Sapria himalayana HOM05D003622 ORTHO05D004453 4.4e-15 87.8 109 48.6
MBI13_g36805_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 9.8e-15 86.7 168 40.5
SEGI_22443 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 1.7e-14 85.9 121 44.6
Sabra10G0016400 Salix brachista HOM05D003622 ORTHO05D004453 1.3e-11 76.3 56 58.9
Actinidia38716 Actinidia chinensis HOM05D003622 ORTHO05D004453 6.5e-11 73.9 57 66.7
HPP92_000472 Vanilla planifolia HOM05D003622 ORTHO05D004453 6.5e-11 73.9 152 36.8
Oeu042754.1 Olea europaea HOM05D003622 ORTHO05D004453 7.2e-10 70.5 55 61.8
MBI13_g36809_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D240810 3.6e-09 68.2 47 61.7
MD02G1023900 Malus domestica HOM05D003622 ORTHO05D048666 3.4e-07 61.6 85 41.2
Haze_25504 Corylus avellana HOM05D003622 ORTHO05D004453 4.9e-06 57.8 52 51.9
MBI13_g02371_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D000708 6.3e-06 57.4 66 50.0


User provided reference genes

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