Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022550 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 0.0e+00 1678.7 907 100.0
Actinidia37716 Actinidia chinensis HOM05D004735 ORTHO05D005243 0.0e+00 1090.5 932 65.3
Dinv25616 Davidia involucrata HOM05D004735 ORTHO05D005243 2.8e-302 1042.0 926 65.9
Hma1.2p1_0421F.1_g149860 Hydrangea macrophylla HOM05D004735 ORTHO05D005243 2.7e-273 945.7 922 61.3
vmacro18383 Vaccinium macrocarpon HOM05D004735 ORTHO05D005243 3.3e-271 938.7 928 58.9
Dinv33275 Davidia involucrata HOM05D004735 ORTHO05D005243 1.3e-222 777.3 690 66.4
Cfa007143 Carpinus fangiana HOM05D004735 ORTHO05D005243 6.7e-216 755.0 928 53.7
Prupe.3G314000 Prunus persica HOM05D004735 ORTHO05D005243 1.2e-212 744.2 919 49.5
Thecc.04G048500 Theobroma cacao HOM05D004735 ORTHO05D005243 2.5e-210 736.5 926 48.7
Haze_14980 Corylus avellana HOM05D004735 ORTHO05D005243 8.2e-206 721.5 971 49.8
Rhsim08G0038800 Rhododendron simsii HOM05D004735 ORTHO05D005243 5.5e-202 708.8 734 56.4
QL02p069299 Quercus lobata HOM05D004735 ORTHO05D005243 9.4e-202 708.0 999 48.7
CiPaw.03G001400 Carya illinoinensis HOM05D004735 ORTHO05D005243 1.2e-201 707.6 919 48.3
Duzib264G0086 Durio zibethinus HOM05D004735 ORTHO05D005243 5.2e-200 702.2 926 47.7
RcHm_v2.0_Chr2g0176561 Rosa chinensis HOM05D004735 ORTHO05D005243 5.7e-199 698.7 931 46.9
Manes.04G093600 Manihot esculenta HOM05D004735 ORTHO05D005243 4.1e-197 692.6 946 48.6
Duzib147G0188 Durio zibethinus HOM05D004735 ORTHO05D005243 2.7e-196 689.9 931 46.5
Duzib187G1028 Durio zibethinus HOM05D004735 ORTHO05D005243 1.8e-192 677.2 925 46.5
GSVIVG01032979001 Vitis vinifera HOM05D004735 ORTHO05D005243 1.3e-190 671.0 787 51.0
Oeu035383.1 Olea europaea HOM05D004735 ORTHO05D005243 2.4e-189 666.8 930 44.9
Atru.chr6.2700 Acer truncatum HOM05D004735 ORTHO05D005243 2.7e-188 663.3 933 48.4
Manes.11G076100 Manihot esculenta HOM05D004735 ORTHO05D005243 2.7e-188 663.3 944 48.5
FAN02G4354 Fragaria x ananassa HOM05D004735 ORTHO05D005243 6.6e-187 658.7 932 44.8
Gorai.007G073000 Gossypium raimondii HOM05D004735 ORTHO05D005243 2.5e-186 656.8 924 45.8
MD17G1006400 Malus domestica HOM05D004735 ORTHO05D005243 1.2e-185 654.4 930 44.3
Potri.002G237800 Populus trichocarpa HOM05D004735 ORTHO05D005243 3.1e-184 649.8 936 47.0
Gohir.D11G068200 Gossypium hirsutum HOM05D004735 ORTHO05D005243 4.0e-184 649.4 924 45.5
Potri.014G144100 Populus trichocarpa HOM05D004735 ORTHO05D005243 5.2e-184 649.0 935 48.6
MD09G1002200 Malus domestica HOM05D004735 ORTHO05D005243 8.9e-184 648.3 915 46.0
TWI32G0607 Tripterygium wilfordii HOM05D004735 ORTHO05D005243 1.7e-182 644.0 921 45.4
SalBow4G2972 Salvia bowleyana HOM05D004735 ORTHO05D005243 2.2e-182 643.7 957 46.2
FAN09G0836 Fragaria x ananassa HOM05D004735 ORTHO05D005243 8.3e-182 641.7 932 44.0
FvH4_6g54340 Fragaria vesca HOM05D004735 ORTHO05D005243 1.4e-181 641.0 929 43.9
FAN05G2416 Fragaria x ananassa HOM05D004735 ORTHO05D005243 4.1e-181 639.4 932 44.1
FAN14G4878 Fragaria x ananassa HOM05D004735 ORTHO05D005243 2.7e-180 636.7 932 43.8
Gohir.A10G069900 Gossypium hirsutum HOM05D004735 ORTHO05D005243 3.5e-180 636.3 936 44.4
Gohir.D10G081300 Gossypium hirsutum HOM05D004735 ORTHO05D005243 3.5e-180 636.3 936 44.4
Gorai.011G088500 Gossypium raimondii HOM05D004735 ORTHO05D005243 3.5e-180 636.3 936 44.4
Sabra02G0181300 Salix brachista HOM05D004735 ORTHO05D005243 1.0e-179 634.8 948 45.5
Sabra14G0108800 Salix brachista HOM05D004735 ORTHO05D005243 3.9e-179 632.9 937 47.0
Migut.F00010 Erythranthe guttata HOM05D004735 ORTHO05D005243 1.1e-176 624.8 956 43.1
CiPaw.04G001000 Carya illinoinensis HOM05D004735 ORTHO05D005243 1.7e-174 617.5 863 45.4
Nn4g22117 Nelumbo nucifera HOM05D004735 ORTHO05D005243 8.3e-174 615.1 933 43.3
CANSAT64G0702 Cannabis sativa HOM05D004735 ORTHO05D005243 1.1e-173 614.8 945 42.1
TWI60G1686 Tripterygium wilfordii HOM05D004735 ORTHO05D005243 9.2e-173 611.7 923 44.3
VMungo0464G0888 Vigna mungo HOM05D004735 ORTHO05D005243 2.6e-167 593.6 1002 41.2
TAR629G0422 Trochodendron aralioides HOM05D004735 ORTHO05D005243 2.9e-166 590.1 943 42.9
MSTRG.24121 Avicennia marina HOM05D004735 ORTHO05D005243 7.1e-165 585.5 922 41.0
Glyma.16G147800 Glycine max HOM05D004735 ORTHO05D005243 1.2e-164 584.7 1020 41.6
Cpa.g.sc70.59 Carica papaya HOM05D004735 ORTHO05D005243 1.6e-164 584.3 985 43.4
Lj7A617T74 Lonicera japonica HOM05D004735 ORTHO05D005243 1.5e-162 577.8 715 49.2
Sopen02g039210 Solanum pennellii HOM05D004735 ORTHO05D005243 8.1e-161 572.0 1030 40.1
DCAR_014465 Daucus carota HOM05D004735 ORTHO05D005243 2.4e-160 570.5 935 40.5
Nitab4.5_0000519g0300 Nicotiana tabacum HOM05D004735 ORTHO05D005243 8.9e-160 568.5 1032 41.6
Phvul.004G069600 Phaseolus vulgaris HOM05D004735 ORTHO05D005243 3.4e-159 566.6 1019 40.7
Nitab4.5_0002172g0170 Nicotiana tabacum HOM05D004735 ORTHO05D005243 3.8e-158 563.1 997 41.6
CAN.G473.160 Capsicum annuum HOM05D004735 ORTHO05D005243 1.1e-157 561.6 1060 40.4
Ca_16589_v3 Cicer arietinum L. HOM05D004735 ORTHO05D005243 3.2e-157 560.1 957 42.4
Lj2g0010549 Lotus japonicus HOM05D004735 ORTHO05D005243 4.2e-157 559.7 942 41.9
Lalb_Chr21g0316971 Lupinus albus HOM05D004735 ORTHO05D005243 1.2e-156 558.1 1020 40.5
arahy.Tifrunner.gnm1.ann1.X964XN Arachis hypogaea HOM05D004735 ORTHO05D005243 5.1e-155 552.7 956 42.6
Lj1g0021966 Lotus japonicus HOM05D004735 ORTHO05D005243 1.1e-154 551.6 917 38.2
Glyma.02G066700 Glycine max HOM05D004735 ORTHO05D005243 4.3e-154 549.7 976 41.3
Medtr6g033235 Medicago truncatula HOM05D004735 ORTHO05D005243 1.6e-153 547.7 980 40.1
arahy.Tifrunner.gnm1.ann1.HAHJ6R Arachis hypogaea HOM05D004735 ORTHO05D005243 8.1e-153 545.4 979 41.7
Eucgr.G01927 Eucalyptus grandis HOM05D004735 ORTHO05D005243 1.2e-151 541.6 1000 39.1
Oeu035273.1 Olea europaea HOM05D004735 ORTHO05D005243 2.0e-151 540.8 956 39.2
Ciclev10014280m.g Citrus clementina HOM05D004735 ORTHO05D005243 9.3e-149 531.9 816 46.9
Hund12196 Selenicereus undatus HOM05D004735 ORTHO05D005243 4.5e-143 513.1 986 37.8
Lalb_Chr02g0156851 Lupinus albus HOM05D004735 ORTHO05D005243 1.9e-141 507.7 1042 38.7
Psat0s787g0080 Pisum sativum HOM05D004735 ORTHO05D005243 1.3e-137 495.0 975 40.4
Medtr7g084170 Medicago truncatula HOM05D004735 ORTHO05D005243 1.6e-137 494.6 1000 34.6
Sc03g0005270 Simmondsia chinensis HOM05D004735 ORTHO05D005243 3.7e-137 493.4 983 39.5
Lsat_1_v5_gn_3_104900 Lactuca sativa HOM05D004735 ORTHO05D005243 1.8e-136 491.1 908 37.9
Psat3g093080 Pisum sativum HOM05D004735 ORTHO05D005243 5.8e-135 486.1 1074 33.0
CsaV3_5G024940 Cucumis sativus L. HOM05D004735 ORTHO05D005243 8.4e-134 482.3 1015 35.1
TPR.G15417 Trifolium pratense HOM05D004735 ORTHO05D005243 5.5e-133 479.6 1029 35.9
Sed0022562 Sechium edule HOM05D004735 ORTHO05D005243 1.6e-132 478.0 1023 34.9
MELO3C005100.2 Cucumis melo HOM05D004735 ORTHO05D005243 4.0e-128 463.4 1014 34.1
EL10Ac3g06356 Beta vulgaris HOM05D004735 ORTHO05D005243 1.0e-126 458.8 1015 38.2
ECA246G4565 Erigeron canadensis HOM05D004735 ORTHO05D005243 1.9e-125 454.5 898 37.5
AUR62038220 Chenopodium quinoa HOM05D004735 ORTHO05D005243 1.2e-124 451.8 1078 35.6
AUR62030086 Chenopodium quinoa HOM05D004735 ORTHO05D005243 6.1e-124 449.5 1096 36.8
COL.COLO4_13380 Corchorus olitorius HOM05D004735 ORTHO05D005243 6.7e-123 446.0 672 45.8
HanXRQChr17g0550891 Helianthus annuus HOM05D004735 ORTHO05D005243 6.3e-121 439.5 895 37.3
ClCG01G007860 Citrullus lanatus HOM05D004735 ORTHO05D005243 3.1e-120 437.2 1039 34.4
Ah.13g074210 Amaranthus hybridus HOM05D004735 ORTHO05D005243 3.2e-117 427.2 1045 35.7
SGA_v2.0_scaffold423G51443 Striga asiatica HOM05D004735 ORTHO05D005243 5.1e-115 419.9 883 35.9
Ca_08203_v3 Cicer arietinum L. HOM05D004735 ORTHO05D005243 6.7e-115 419.5 920 34.1
THA.LOC104802362 Tarenaya hassleriana HOM05D004735 ORTHO05D005243 1.8e-112 411.4 1025 32.7
TPR.G30897 Trifolium pratense HOM05D004735 ORTHO05D005243 7.2e-109 399.4 992 36.0
Gohir.A11G063900 Gossypium hirsutum HOM05D004735 ORTHO05D005243 2.6e-106 391.0 622 42.8
Aa31LG11G15430 Aethionema arabicum HOM05D004735 ORTHO05D005243 2.0e-103 381.3 1007 33.4
AT5G13950 Arabidopsis thaliana HOM05D004735 ORTHO05D005243 2.6e-103 380.9 990 32.8
Peaxi162Scf00420g00844 Petunia axillaris HOM05D004735 ORTHO05D005243 1.0e-102 379.0 806 38.5
C03p07280 Brassica napus HOM05D004735 ORTHO05D005243 3.8e-102 377.1 953 33.2
BolC3t13230H Brassica oleracea HOM05D004735 ORTHO05D005243 1.1e-101 375.6 953 32.9
Solyc02g094540.4 Solanum lycopersicum HOM05D004735 ORTHO05D005243 3.2e-101 374.0 766 38.4
Sp6g30050 Schrenkiella parvula HOM05D004735 ORTHO05D005243 4.2e-101 373.6 995 32.6
HanXRQChr15g0475721 Helianthus annuus HOM05D004735 ORTHO05D005243 1.2e-100 372.1 714 37.7
MBI07_g13942_MAGBIO Magnolia biondii HOM05D004735 ORTHO05D005243 3.6e-100 370.5 987 33.1
Carub.0006s1214 Capsella rubella HOM05D004735 ORTHO05D005243 8.0e-100 369.4 999 32.1
BolC9t59152H Brassica oleracea HOM05D004735 ORTHO05D005243 2.3e-99 367.9 947 32.7
Thhalv10012594m.g Eutrema salsugineum HOM05D004735 ORTHO05D005243 2.3e-99 367.9 1010 31.3
Gohir.A11G063833 Gossypium hirsutum HOM05D004735 ORTHO05D005243 3.9e-99 367.1 570 42.6
PGR042G1405 Punica granatum HOM05D004735 ORTHO05D005243 6.7e-99 366.3 975 35.0
AL6G24610 Arabidopsis lyrata HOM05D004735 ORTHO05D005243 2.2e-97 361.3 989 31.3
C09p63170 Brassica napus HOM05D004735 ORTHO05D005243 4.1e-96 357.1 943 31.8
PSO017G6705 Papaver somniferum HOM05D004735 ORTHO05D005243 7.0e-96 356.3 967 31.4
Ah.07g203970 Amaranthus hybridus HOM05D004735 ORTHO05D005243 1.6e-95 355.1 965 32.0
PSO478G1205 Papaver somniferum HOM05D004735 ORTHO05D005243 1.6e-95 355.1 970 30.9
A10p24440 Brassica napus HOM05D004735 ORTHO05D005243 3.5e-95 354.0 961 32.7
BcaB01g05325 Brassica carinata HOM05D004735 ORTHO05D005243 2.9e-94 350.9 941 31.9
THA.LOC104821139 Tarenaya hassleriana HOM05D004735 ORTHO05D005243 8.5e-94 349.4 1032 29.8
TAR371G0169 Trochodendron aralioides HOM05D004735 ORTHO05D008917 2.3e-91 341.3 338 55.0
CARHR199450 Cardamine hirsuta HOM05D004735 ORTHO05D005243 1.5e-90 338.6 1002 31.0
Cc07_g01350 Coffea canephora HOM05D004735 ORTHO05D005243 2.4e-88 331.3 491 42.2
PGSC0003DMG400020237 Solanum tuberosum HOM05D004735 ORTHO05D005243 2.0e-82 311.6 403 44.7
CSS0050200 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 3.1e-80 304.3 232 66.8
Lalb_Chr22g0359831 Lupinus albus HOM05D004735 ORTHO05D005243 3.1e-80 304.3 627 34.8
Actinidia19551 Actinidia chinensis HOM05D004735 ORTHO05D005243 4.5e-79 300.4 212 68.9
CSS0035487 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 4.7e-76 290.4 238 63.9
CSS0009135 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 3.4e-74 284.3 239 62.8
CDE06G2773 Ceratophyllum demersum HOM05D004735 ORTHO05D005243 2.6e-66 258.1 417 39.6
ATR0582G141 Amborella trichopoda HOM05D004735 ORTHO05D005243 2.7e-63 248.1 429 37.3
unitig_0.g1642 Utricularia gibba HOM05D004735 ORTHO05D005243 6.8e-59 233.4 693 31.0
Dinv33274 Davidia involucrata HOM05D004735 ORTHO05D005243 9.5e-53 213.0 176 65.3
Gohir.A11G063866 Gossypium hirsutum HOM05D004735 ORTHO05D005243 3.6e-52 211.1 226 53.1
Solyc02g094530.1 Solanum lycopersicum HOM05D004735 ORTHO05D005243 3.4e-50 204.5 219 48.4
Lalb_Chr22g0359841 Lupinus albus HOM05D004735 ORTHO05D005243 5.8e-50 203.8 218 48.6
Peaxi162Scf00420g00843 Petunia axillaris HOM05D004735 ORTHO05D005243 5.8e-50 203.8 249 45.4
CSS0011678 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 1.3e-49 202.6 143 70.6
Zm00001eb307010 Zea mays HOM05D004735 ORTHO05D005243 2.3e-46 191.8 439 30.5
BraA10t44508Z Brassica rapa HOM05D000139 ORTHO05D005243 2.8e-44 184.9 656 30.0
Cc07_g01360 Coffea canephora HOM05D004735 ORTHO05D005243 3.4e-42 177.9 211 47.9
SEGI_21903 Sequoiadendron giganteum HOM05D004735 ORTHO05D005243 4.6e-39 167.5 220 40.0
Lj7A617T73 Lonicera japonica HOM05D004735 ORTHO05D005243 6.6e-38 163.7 128 67.2
Cc07_g01340 Coffea canephora HOM05D004735 ORTHO05D005243 2.5e-37 161.8 132 65.9
CSS0009912 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 2.0e-34 152.1 99 74.7
CDE02G2610 Ceratophyllum demersum HOM05D004735 ORTHO05D005243 9.9e-26 123.2 244 34.4
SHI13678 Sapria himalayana HOM05D004735 ORTHO05D005243 3.0e-22 111.7 128 48.4
Psat7g164720 Pisum sativum HOM05D000121 ORTHO05D000102 1.1e-21 109.8 97 59.8
CBR_g32498 Chara braunii HOM05D004735 ORTHO05D005243 9.6e-21 106.7 141 37.6
TPR.G28482 Trifolium pratense HOM05D004735 ORTHO05D005243 2.8e-20 105.1 117 53.0
BcaC04g19065 Brassica carinata HOM05D004735 ORTHO05D005243 8.1e-20 103.6 430 28.4
CDE02G4423 Ceratophyllum demersum HOM05D004735 ORTHO05D005243 3.1e-19 101.7 84 58.3
CSS0016869 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 4.5e-18 97.8 89 60.7
BolC2t06598H Brassica oleracea HOM05D000139 ORTHO05D000103 1.9e-16 92.4 87 55.2
C02p06510 Brassica napus HOM05D000139 ORTHO05D000103 7.1e-16 90.5 87 54.0
A03p06300 Brassica napus HOM05D004735 ORTHO05D005243 7.4e-13 80.5 240 29.6
BraA03t09961Z Brassica rapa HOM05D004735 ORTHO05D005243 7.4e-13 80.5 240 29.6
Oeu062522.1 Olea europaea HOM05D004735 ORTHO05D005243 1.6e-12 79.3 162 35.2
SMO112G0099 Selaginella moellendorffii HOM05D004735 ORTHO05D005243 2.9e-09 68.6 95 37.9
SMO364G0040 Selaginella moellendorffii HOM05D004735 ORTHO05D005243 3.8e-09 68.2 95 36.8
unitig_0.g1643 Utricularia gibba HOM05D004735 ORTHO05D005243 6.1e-07 60.8 105 36.2
SHI13679 Sapria himalayana HOM05D004735 ORTHO05D005243 6.7e-06 57.4 37 62.2


User provided reference genes

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