Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022548 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D003912 8.2e-114 413.7 203 100.0
CSS0006170 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D003912 6.1e-109 397.5 203 96.6
CSS0030102 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D003912 6.2e-69 264.6 135 98.5
CSS0021199 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D003912 5.1e-39 165.2 138 68.8
TAR381G0613 Trochodendron aralioides HOM05D000010 ORTHO05D003912 1.7e-26 123.6 151 51.0
Nn6g31768 Nelumbo nucifera HOM05D000010 ORTHO05D003912 2.1e-24 116.7 156 46.8
TAR625G0135 Trochodendron aralioides HOM05D000010 ORTHO05D003912 3.5e-24 115.9 138 50.0
MBI05_g16453_MAGBIO Magnolia biondii HOM05D000010 ORTHO05D003912 2.3e-23 113.2 138 49.3
Actinidia24611 Actinidia chinensis HOM05D000010 ORTHO05D003912 1.1e-22 110.9 143 44.8
Cfa005342 Carpinus fangiana HOM05D000010 ORTHO05D003912 4.3e-22 109.0 151 47.0
Haze_02026 Corylus avellana HOM05D000010 ORTHO05D003912 5.7e-22 108.6 151 47.0
CSS0048023 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D003912 7.4e-22 108.2 144 43.1
QL11p054925 Quercus lobata HOM05D000010 ORTHO05D003912 7.4e-22 108.2 144 46.5
CiPaw.05G090800 Carya illinoinensis HOM05D000010 ORTHO05D003912 2.2e-21 106.7 142 47.9
GSVIVG01007194001 Vitis vinifera HOM05D000010 ORTHO05D003912 2.2e-21 106.7 137 51.1
Actinidia18014 Actinidia chinensis HOM05D000010 ORTHO05D003912 2.8e-21 106.3 147 48.3
Nn5g30910 Nelumbo nucifera HOM05D000010 ORTHO05D003912 6.3e-21 105.1 149 45.0
Actinidia28739 Actinidia chinensis HOM05D000010 ORTHO05D003912 8.2e-21 104.8 124 56.5
Dinv14152 Davidia involucrata HOM05D000010 ORTHO05D003912 4.1e-20 102.4 147 44.2
Gohir.A12G035000 Gossypium hirsutum HOM05D000010 ORTHO05D003912 7.7e-19 98.2 145 45.5
GSVIVG01023921001 Vitis vinifera HOM05D000010 ORTHO05D003912 2.2e-18 96.7 147 44.2
Duzib052G0724 Durio zibethinus HOM05D000010 ORTHO05D003912 3.8e-18 95.9 150 44.7
CiPaw.06G117300 Carya illinoinensis HOM05D000010 ORTHO05D003912 5.0e-18 95.5 150 42.0
Potri.009G141600 Populus trichocarpa HOM05D000010 ORTHO05D003912 5.0e-18 95.5 143 45.5
vmacro02313 Vaccinium macrocarpon HOM05D000010 ORTHO05D003912 1.1e-17 94.4 168 44.0
CSS0025009 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D003912 1.4e-17 94.0 143 43.4
CSS0026968 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D003912 1.4e-17 94.0 143 43.4
Gohir.D12G037700 Gossypium hirsutum HOM05D000010 ORTHO05D003912 1.4e-17 94.0 146 43.8
Lj9A403T64 Lonicera japonica HOM05D000010 ORTHO05D003912 1.4e-17 94.0 157 38.9
CANSAT25G2645 Cannabis sativa HOM05D000010 ORTHO05D003912 2.5e-17 93.2 149 40.3
Ciclev10029007m.g Citrus clementina HOM05D000010 ORTHO05D003912 2.5e-17 93.2 144 44.4
Peaxi162Scf00875g00111 Petunia axillaris HOM05D000010 ORTHO05D003912 3.2e-17 92.8 156 44.9
Cc00_g14270 Coffea canephora HOM05D000010 ORTHO05D003912 4.2e-17 92.4 144 43.8
Gorai.008G038800 Gossypium raimondii HOM05D000010 ORTHO05D003912 4.2e-17 92.4 146 42.5
Duzib132G0483 Durio zibethinus HOM05D000010 ORTHO05D003912 5.5e-17 92.0 148 43.2
Gohir.A01G001700 Gossypium hirsutum HOM05D000010 ORTHO05D003912 5.5e-17 92.0 149 41.6
CAN.G234.20 Capsicum annuum HOM05D000010 ORTHO05D003912 9.4e-17 91.3 161 42.9
Potri.004G181900 Populus trichocarpa HOM05D000010 ORTHO05D003912 9.4e-17 91.3 141 48.2
Thecc.02G049000 Theobroma cacao HOM05D000010 ORTHO05D003912 1.2e-16 90.9 144 43.8
Gohir.D02G230100 Gossypium hirsutum HOM05D000010 ORTHO05D003912 1.6e-16 90.5 137 43.1
Gorai.002G001900 Gossypium raimondii HOM05D000010 ORTHO05D003912 1.6e-16 90.5 149 40.3
MELO3C013287.2 Cucumis melo HOM05D000010 ORTHO05D003912 2.7e-16 89.7 145 41.4
MD05G1130500 Malus domestica HOM05D000010 ORTHO05D003912 2.7e-16 89.7 145 45.5
Gohir.A03G208600 Gossypium hirsutum HOM05D000010 ORTHO05D003912 3.6e-16 89.4 137 43.1
PGSC0003DMG400010870 Solanum tuberosum HOM05D000010 ORTHO05D003912 4.6e-16 89.0 157 42.0
Duzib248G0804 Durio zibethinus HOM05D000010 ORTHO05D003912 6.1e-16 88.6 140 43.6
Sabra04G0122600 Salix brachista HOM05D000010 ORTHO05D003912 1.4e-15 87.4 140 45.0
Gorai.005G257800 Gossypium raimondii HOM05D000010 ORTHO05D003912 1.8e-15 87.0 137 42.3
Nitab4.5_0007206g0010 Nicotiana tabacum HOM05D000010 ORTHO05D003912 1.8e-15 87.0 162 40.7
Sopen10g025590 Solanum pennellii HOM05D000010 ORTHO05D003912 1.8e-15 87.0 146 41.8
TPR.G21263 Trifolium pratense HOM05D000010 ORTHO05D003912 1.8e-15 87.0 154 39.6
Nitab4.5_0005898g0020 Nicotiana tabacum HOM05D000010 ORTHO05D003912 2.3e-15 86.7 153 39.2
Manes.04G067950 Manihot esculenta HOM05D000010 ORTHO05D003912 3.0e-15 86.3 148 43.2
Psat7g178960 Pisum sativum HOM05D000010 ORTHO05D003912 3.0e-15 86.3 158 38.0
Sed0001694 Sechium edule HOM05D000010 ORTHO05D003912 3.0e-15 86.3 143 42.7
Solyc10g055760.2 Solanum lycopersicum HOM05D000010 ORTHO05D003912 3.9e-15 85.9 152 41.4
vmacro17278 Vaccinium macrocarpon HOM05D000010 ORTHO05D003912 6.7e-15 85.1 159 39.6
Prupe.8G174800 Prunus persica HOM05D000010 ORTHO05D003912 1.1e-14 84.3 151 39.7
ClCG02G003600 Citrullus lanatus HOM05D000010 ORTHO05D003912 2.0e-14 83.6 144 43.8
MD10G1133400 Malus domestica HOM05D000010 ORTHO05D003912 3.3e-14 82.8 150 40.7
Rhsim11G0196000 Rhododendron simsii HOM05D000010 ORTHO05D003912 3.3e-14 82.8 152 43.4
CsaV3_7G001570 Cucumis sativus L. HOM05D000010 ORTHO05D003912 4.3e-14 82.4 145 37.9
VMungo1127G0484 Vigna mungo HOM05D000010 ORTHO05D003912 4.3e-14 82.4 151 41.1
Hma1.2p1_0271F.1_g109130 Hydrangea macrophylla HOM05D000010 ORTHO05D003912 5.7e-14 82.0 164 37.2
Potri.005G103200 Populus trichocarpa HOM05D000010 ORTHO05D003912 7.4e-14 81.6 118 44.9
Medtr4g075980 Medicago truncatula HOM05D000010 ORTHO05D003912 9.7e-14 81.3 153 39.9
PGR042G1123 Punica granatum HOM05D000010 ORTHO05D003912 1.3e-13 80.9 151 38.4
Ca_11240_v3 Cicer arietinum L. HOM05D000010 ORTHO05D003912 2.2e-13 80.1 167 38.3
Lalb_Chr01g0001191 Lupinus albus HOM05D000010 ORTHO05D003912 2.8e-13 79.7 139 39.6
TWI31G0728 Tripterygium wilfordii HOM05D000010 ORTHO05D003912 2.8e-13 79.7 154 42.2
Cc00_g14290 Coffea canephora HOM05D000010 ORTHO05D003912 8.2e-13 78.2 148 38.5
Migut.B00028 Erythranthe guttata HOM05D000010 ORTHO05D003912 8.2e-13 78.2 133 40.6
Oeu045073.1 Olea europaea HOM05D000010 ORTHO05D003912 8.2e-13 78.2 136 39.7
HPP92_014995 Vanilla planifolia HOM05D000010 ORTHO05D003912 1.4e-12 77.4 168 38.7
MSTRG.19954 Avicennia marina HOM05D000010 ORTHO05D003912 1.8e-12 77.0 130 42.3
HanXRQChr17g0543751 Helianthus annuus HOM05D000010 ORTHO05D003912 2.4e-12 76.6 137 43.8
Phvul.011G024700 Phaseolus vulgaris HOM05D000010 ORTHO05D003912 2.4e-12 76.6 158 38.0
Rhsim05G0049700 Rhododendron simsii HOM05D000010 ORTHO05D003912 2.4e-12 76.6 164 36.6
THA.LOC104807387 Tarenaya hassleriana HOM05D000010 ORTHO05D003912 3.1e-12 76.3 159 38.4
Os06g0726300 Oryza sativa ssp. japonica HOM05D000010 ORTHO05D003912 4.1e-12 75.9 136 36.8
RcHm_v2.0_Chr6g0279801 Rosa chinensis HOM05D000010 ORTHO05D003912 5.3e-12 75.5 164 39.6
HPP92_020709 Vanilla planifolia HOM05D000010 ORTHO05D003912 5.3e-12 75.5 190 33.2
Glyma.11G096600 Glycine max HOM05D000010 ORTHO05D003912 6.9e-12 75.1 152 36.2
TWI79G1512 Tripterygium wilfordii HOM05D000010 ORTHO05D003912 9.1e-12 74.7 152 40.1
arahy.Tifrunner.gnm1.ann1.TY7WD8 Arachis hypogaea HOM05D000010 ORTHO05D003912 1.2e-11 74.3 167 35.3
Lj3g0004138 Lotus japonicus HOM05D000010 ORTHO05D003912 1.2e-11 74.3 164 34.1
ClCG02G010940 Citrullus lanatus HOM05D000010 ORTHO05D003912 1.5e-11 73.9 148 40.5
PGR142G0486 Punica granatum HOM05D000010 ORTHO05D003912 1.5e-11 73.9 137 43.8
Aqoxy6G01788 Aquilegia oxysepala HOM05D000010 ORTHO05D003912 2.6e-11 73.2 147 38.1
DCAR_015676 Daucus carota HOM05D000010 ORTHO05D003912 2.6e-11 73.2 150 39.3
Glyma.12G022700 Glycine max HOM05D000010 ORTHO05D003912 2.6e-11 73.2 152 36.8
HPP92_003505 Vanilla planifolia HOM05D000010 ORTHO05D003912 2.6e-11 73.2 166 34.9
CsaV3_6G012740 Cucumis sativus L. HOM05D000010 ORTHO05D003912 3.4e-11 72.8 157 36.9
FAN20G2295 Fragaria x ananassa HOM05D000010 ORTHO05D003912 3.4e-11 72.8 169 35.5
HanXRQChr15g0476501 Helianthus annuus HOM05D000010 ORTHO05D003912 3.4e-11 72.8 138 42.8
Lalb_Chr19g0139581 Lupinus albus HOM05D000010 ORTHO05D003912 3.4e-11 72.8 149 36.9
Nitab4.5_0000188g0310 Nicotiana tabacum HOM05D000010 ORTHO05D003912 4.5e-11 72.4 129 36.4
Eucgr.I01494 Eucalyptus grandis HOM05D000010 ORTHO05D003912 5.9e-11 72.0 155 36.8
THA.LOC104804309 Tarenaya hassleriana HOM05D000010 ORTHO05D003912 7.7e-11 71.6 148 41.2
A09p11190 Brassica napus HOM05D000010 ORTHO05D003912 1.0e-10 71.2 150 37.3
BraA09t36762Z Brassica rapa HOM05D000010 ORTHO05D003912 1.0e-10 71.2 150 37.3
FAN15G3200 Fragaria x ananassa HOM05D000010 ORTHO05D003912 1.0e-10 71.2 167 36.5
HPP92_001736 Vanilla planifolia HOM05D000010 ORTHO05D003912 1.0e-10 71.2 181 34.3
TWI31G0270 Tripterygium wilfordii HOM05D000010 ORTHO05D003912 1.3e-10 70.9 160 38.1
Cpa.g.sc320.2 Carica papaya HOM05D000010 ORTHO05D003912 1.7e-10 70.5 150 42.0
SalBow1G8485 Salvia bowleyana HOM05D000010 ORTHO05D003912 1.7e-10 70.5 127 37.8
Zm00001eb272040 Zea mays HOM05D000010 ORTHO05D003912 1.7e-10 70.5 155 34.8
BcaC04g22993 Brassica carinata HOM05D000010 ORTHO05D003912 2.2e-10 70.1 150 37.3
A03p46240 Brassica napus HOM05D000010 ORTHO05D003912 2.2e-10 70.1 152 34.9
C09p13240 Brassica napus HOM05D000010 ORTHO05D003912 2.2e-10 70.1 150 37.3
BolC9t54217H Brassica oleracea HOM05D000010 ORTHO05D003912 2.2e-10 70.1 150 37.3
ATR0661G198 Amborella trichopoda HOM05D000010 ORTHO05D003912 2.9e-10 69.7 171 34.5
Oeu006128.2 Olea europaea HOM05D000010 ORTHO05D003912 2.9e-10 69.7 142 39.4
BcaB07g31744 Brassica carinata HOM05D000010 ORTHO05D003912 3.8e-10 69.3 156 38.5
Lsat_1_v5_gn_4_71141 Lactuca sativa HOM05D000010 ORTHO05D003912 3.8e-10 69.3 198 32.3
Aa31LG8G14240 Aethionema arabicum HOM05D000010 ORTHO05D003912 5.0e-10 68.9 147 38.8
CARHR107380 Cardamine hirsuta HOM05D000010 ORTHO05D003912 5.0e-10 68.9 141 38.3
FvH4_2g16180 Fragaria vesca HOM05D000010 ORTHO05D003912 6.5e-10 68.6 162 37.0
AL3G49880 Arabidopsis lyrata HOM05D000010 ORTHO05D003912 8.5e-10 68.2 151 40.4
FAN24G0208 Fragaria x ananassa HOM05D000010 ORTHO05D003912 8.5e-10 68.2 162 37.0
Carub.0003s3097 Capsella rubella HOM05D000010 ORTHO05D003912 1.4e-09 67.4 149 38.3
ECA234G2461 Erigeron canadensis HOM05D000010 ORTHO05D003912 1.4e-09 67.4 193 32.1
FAN24G1211 Fragaria x ananassa HOM05D000010 ORTHO05D003912 1.4e-09 67.4 167 38.3
FAN27G0729 Fragaria x ananassa HOM05D000010 ORTHO05D003912 1.4e-09 67.4 168 35.7
Sed0004560 Sechium edule HOM05D000010 ORTHO05D003912 1.4e-09 67.4 155 34.2
Sed0006043 Sechium edule HOM05D000010 ORTHO05D003912 1.4e-09 67.4 151 34.4
AT2G17040 Arabidopsis thaliana HOM05D000010 ORTHO05D003912 1.9e-09 67.0 145 37.2
HPP92_014556 Vanilla planifolia HOM05D000010 ORTHO05D003912 2.5e-09 66.6 169 35.5
Atru.chr5.3491 Acer truncatum HOM05D000010 ORTHO05D003912 3.2e-09 66.2 161 36.6
Dinv41894 Davidia involucrata HOM05D000656 ORTHO05D000871 3.2e-09 66.2 75 49.3
Sp3g30340 Schrenkiella parvula HOM05D000010 ORTHO05D003912 3.2e-09 66.2 155 38.1
BcaC01g02963 Brassica carinata HOM05D000010 ORTHO05D003912 4.2e-09 65.9 150 33.3
C03p57860 Brassica napus HOM05D000010 ORTHO05D003912 4.2e-09 65.9 150 33.3
BolC3t18057H Brassica oleracea HOM05D000010 ORTHO05D003912 4.2e-09 65.9 150 33.3
Manes.11G106050 Manihot esculenta HOM05D000010 ORTHO05D003912 4.2e-09 65.9 157 36.3
CAN.G23.1 Capsicum annuum HOM05D000010 ORTHO05D003912 5.5e-09 65.5 131 34.4
Cc09_g10560 Coffea canephora HOM05D000010 ORTHO05D003912 5.5e-09 65.5 152 35.5
PSO675G3759 Papaver somniferum HOM05D000010 ORTHO05D003912 1.2e-08 64.3 198 29.8
PSO541G6436 Papaver somniferum HOM05D000010 ORTHO05D003912 2.1e-08 63.5 193 30.1
BolC7t41066H Brassica oleracea HOM05D000010 ORTHO05D003912 2.7e-08 63.2 153 31.4
PGSC0003DMG400008677 Solanum tuberosum HOM05D000010 ORTHO05D003912 2.7e-08 63.2 121 35.5
EL10Ac9g21279 Beta vulgaris HOM05D000010 ORTHO05D003912 4.7e-08 62.4 143 38.5
BcaC06g36216 Brassica carinata HOM05D000010 ORTHO05D003912 4.7e-08 62.4 155 32.3
C07p06450 Brassica napus HOM05D000010 ORTHO05D003912 4.7e-08 62.4 155 32.3
Gohir.D01G001300 Gossypium hirsutum HOM05D000010 ORTHO05D003912 4.7e-08 62.4 73 49.3
BcaB03g16440 Brassica carinata HOM05D000010 ORTHO05D003912 6.1e-08 62.0 159 33.3
SGA_v2.0_scaffold207G41949 Striga asiatica HOM05D000010 ORTHO05D003912 2.3e-07 60.1 127 34.6
arahy.Tifrunner.gnm1.ann1.A1VWSL Arachis hypogaea HOM05D000010 ORTHO05D003912 3.0e-07 59.7 173 31.8
DCAR_006295 Daucus carota HOM05D000010 ORTHO05D003912 3.0e-07 59.7 86 47.7
Sabra05G0085400 Salix brachista HOM05D000010 ORTHO05D003912 3.9e-07 59.3 131 36.6
A07p04050 Brassica napus HOM05D000010 ORTHO05D003912 5.1e-07 58.9 155 31.6
BraA07t28197Z Brassica rapa HOM05D000010 ORTHO05D003912 5.1e-07 58.9 155 31.6
Oeu024274.1 Olea europaea HOM05D000010 ORTHO05D003912 5.1e-07 58.9 135 31.1
HanXRQChr05g0140421 Helianthus annuus HOM05D000010 ORTHO05D003912 1.1e-06 57.8 75 44.0
Hund00340 Selenicereus undatus HOM05D000010 ORTHO05D003912 5.7e-06 55.5 147 36.1
Hund28333 Selenicereus undatus HOM05D000010 ORTHO05D003912 5.7e-06 55.5 147 36.1
HPP92_007312 Vanilla planifolia HOM05D053869 ORTHO05D429833 7.4e-06 55.1 176 31.8
Sc08g0002540 Simmondsia chinensis HOM05D000010 ORTHO05D003912 9.7e-06 54.7 131 37.4


User provided reference genes

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