Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022527 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 3.1e-220 768.1 368 100.0
CSS0021914 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 9.7e-214 746.5 368 97.3
Dinv41871 Davidia involucrata HOM05D005203 ORTHO05D006383 9.8e-182 640.2 387 80.4
Dinv14173 Davidia involucrata HOM05D005203 ORTHO05D006383 1.0e-178 630.2 420 74.8
CSS0012413 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.1e-177 626.7 387 78.3
CiPaw.06G115500 Carya illinoinensis HOM05D005203 ORTHO05D006383 1.2e-174 616.7 387 75.5
Thecc.02G146000 Theobroma cacao HOM05D005203 ORTHO05D006383 1.3e-173 613.2 387 75.7
Prupe.8G179800 Prunus persica HOM05D005203 ORTHO05D006383 4.1e-172 608.2 387 76.0
Lj1g0021981 Lotus japonicus HOM05D005203 ORTHO05D006383 6.0e-171 604.4 387 74.9
MSTRG.19946 Avicennia marina HOM05D005203 ORTHO05D006383 1.0e-170 603.6 387 74.2
Potri.009G168000 Populus trichocarpa HOM05D005203 ORTHO05D006383 1.0e-170 603.6 387 74.2
Glyma.04G000400 Glycine max HOM05D005203 ORTHO05D006383 3.0e-170 602.1 387 74.4
Potri.004G206900 Populus trichocarpa HOM05D005203 ORTHO05D006383 8.6e-170 600.5 387 73.6
Migut.B00006 Erythranthe guttata HOM05D005203 ORTHO05D006383 1.1e-169 600.1 388 72.9
Glyma.06G000300 Glycine max HOM05D005203 ORTHO05D006383 1.5e-169 599.7 387 74.4
Solyc01g112240.4 Solanum lycopersicum HOM05D005203 ORTHO05D006383 2.5e-169 599.0 387 72.9
Cc09_g10810 Coffea canephora HOM05D005203 ORTHO05D006383 1.2e-168 596.7 396 73.5
Gohir.D12G014000 Gossypium hirsutum HOM05D005203 ORTHO05D006383 4.7e-168 594.7 387 71.6
TWI75G1664 Tripterygium wilfordii HOM05D005203 ORTHO05D006383 6.2e-168 594.3 387 73.6
Sed0018804 Sechium edule HOM05D005203 ORTHO05D006383 1.1e-167 593.6 388 72.4
Peaxi162Scf00362g00132 Petunia axillaris HOM05D005203 ORTHO05D006383 1.8e-167 592.8 401 72.6
MELO3C013249.2 Cucumis melo HOM05D005203 ORTHO05D006383 2.3e-167 592.4 388 71.6
CANSAT25G3783 Cannabis sativa HOM05D005203 ORTHO05D006383 3.1e-167 592.0 387 73.6
Manes.11G110000 Manihot esculenta HOM05D005203 ORTHO05D006383 4.0e-167 591.7 387 72.9
PGR042G0992 Punica granatum HOM05D005203 ORTHO05D006383 4.0e-167 591.7 388 73.2
GSVIVG01002028001 Vitis vinifera HOM05D005203 ORTHO05D006383 4.0e-167 591.7 387 74.9
Gohir.A12G013200 Gossypium hirsutum HOM05D005203 ORTHO05D006383 8.9e-167 590.5 387 71.1
Ciclev10028418m.g Citrus clementina HOM05D005203 ORTHO05D006383 1.2e-166 590.1 387 72.6
CsaV3_7G001910 Cucumis sativus L. HOM05D005203 ORTHO05D006383 1.5e-166 589.7 388 71.4
Nn6g31681 Nelumbo nucifera HOM05D005203 ORTHO05D006383 1.5e-166 589.7 387 72.9
Aqoxy5G00999 Aquilegia oxysepala HOM05D005203 ORTHO05D006383 2.0e-166 589.3 387 73.1
Gorai.008G014000 Gossypium raimondii HOM05D005203 ORTHO05D006383 7.5e-166 587.4 388 70.9
Eucgr.H04989 Eucalyptus grandis HOM05D005203 ORTHO05D006383 2.2e-165 585.9 387 72.4
Ca_15273_v3 Cicer arietinum L. HOM05D005203 ORTHO05D006383 6.4e-165 584.3 387 72.6
PSO210G4213 Papaver somniferum HOM05D005203 ORTHO05D006383 6.4e-165 584.3 387 72.4
FvH4_2g16770 Fragaria vesca HOM05D005203 ORTHO05D006383 9.2e-164 580.5 387 71.8
Sc18g0005820 Simmondsia chinensis HOM05D005203 ORTHO05D006383 9.2e-164 580.5 387 70.5
PSO170G2598 Papaver somniferum HOM05D005203 ORTHO05D006383 1.2e-163 580.1 387 71.8
MD10G1141600 Malus domestica HOM05D005203 ORTHO05D006383 3.5e-163 578.6 387 73.1
TPR.G38553 Trifolium pratense HOM05D005203 ORTHO05D006383 6.0e-163 577.8 387 71.8
Phvul.009G115600 Phaseolus vulgaris HOM05D005203 ORTHO05D006383 1.0e-162 577.0 387 71.6
FAN15G3115 Fragaria x ananassa HOM05D005203 ORTHO05D006383 3.0e-162 575.5 387 71.1
ECA246G3822 Erigeron canadensis HOM05D005203 ORTHO05D006383 3.9e-162 575.1 352 75.6
Eucgr.L00584 Eucalyptus grandis HOM05D005203 ORTHO05D006383 1.9e-161 572.8 344 76.7
Cfa005369 Carpinus fangiana HOM05D005203 ORTHO05D006383 4.3e-161 571.6 387 72.1
ECA234G1180 Erigeron canadensis HOM05D005203 ORTHO05D006383 2.1e-160 569.3 388 69.8
Psat5g000480 Pisum sativum HOM05D005203 ORTHO05D006383 2.8e-160 568.9 352 75.6
Atru.chr5.3533 Acer truncatum HOM05D005203 ORTHO05D006383 4.7e-160 568.2 352 76.1
Carub.0007s0018 Capsella rubella HOM05D005203 ORTHO05D006383 4.7e-160 568.2 387 70.3
MD05G1138700 Malus domestica HOM05D005203 ORTHO05D006383 1.8e-159 566.2 387 71.6
Sp7g37480 Schrenkiella parvula HOM05D005203 ORTHO05D006383 5.2e-159 564.7 387 69.8
AT4G38240 Arabidopsis thaliana HOM05D005203 ORTHO05D006383 1.5e-158 563.1 387 70.3
THA.LOC104824732 Tarenaya hassleriana HOM05D005203 ORTHO05D006383 1.7e-157 559.7 388 69.3
MBI05_g33297_MAGBIO Magnolia biondii HOM05D005203 ORTHO05D006383 3.8e-157 558.5 387 71.6
HanXRQChr15g0476431 Helianthus annuus HOM05D005203 ORTHO05D006383 1.4e-156 556.6 354 74.6
AL7G10160 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 1.9e-156 556.2 366 72.7
CARHR294030 Cardamine hirsuta HOM05D005203 ORTHO05D006383 3.2e-156 555.4 367 71.7
RcHm_v2.0_Chr6g0280891 Rosa chinensis HOM05D005203 ORTHO05D006383 3.2e-156 555.4 387 69.8
Lsat_1_v5_gn_3_48560 Lactuca sativa HOM05D005203 ORTHO05D006383 4.1e-156 555.1 387 70.0
HanXRQChr10g0298431 Helianthus annuus HOM05D005203 ORTHO05D006383 1.6e-155 553.1 392 68.9
Lsat_1_v5_gn_4_71380 Lactuca sativa HOM05D005203 ORTHO05D006383 2.1e-155 552.7 387 68.2
ClCG02G003410 Citrullus lanatus HOM05D005203 ORTHO05D006383 2.7e-155 552.4 393 68.4
FAN27G1508 Fragaria x ananassa HOM05D005203 ORTHO05D006383 3.0e-154 548.9 383 70.0
Nitab4.5_0000783g0090 Nicotiana tabacum HOM05D005203 ORTHO05D006383 1.5e-153 546.6 413 67.1
CiPaw.05G093000 Carya illinoinensis HOM05D005203 ORTHO05D006383 4.7e-152 541.6 390 69.5
Lalb_Chr08g0246871 Lupinus albus HOM05D005203 ORTHO05D006383 1.4e-151 540.0 387 69.5
BolC7t46794H Brassica oleracea HOM05D005203 ORTHO05D006383 1.8e-151 539.7 387 66.9
Actinidia20576 Actinidia chinensis HOM05D005203 ORTHO05D006383 1.2e-150 537.0 367 71.9
Oeu006117.1 Olea europaea HOM05D005203 ORTHO05D006383 6.4e-149 531.2 349 73.9
Os02g0832800 Oryza sativa ssp. japonica HOM05D005203 ORTHO05D006383 6.4e-149 531.2 389 65.8
arahy.Tifrunner.gnm1.ann1.H6WGQ1 Arachis hypogaea HOM05D005203 ORTHO05D006383 1.4e-148 530.0 389 68.1
Haze_02001 Corylus avellana HOM05D005203 ORTHO05D006383 3.2e-148 528.9 349 74.2
FAN24G3349 Fragaria x ananassa HOM05D005203 ORTHO05D006383 7.1e-148 527.7 383 68.1
BraA06t27778Z Brassica rapa HOM05D005203 ORTHO05D006383 3.5e-147 525.4 408 63.7
Zm00001eb421090 Zea mays HOM05D005203 ORTHO05D006383 1.3e-146 523.5 354 70.3
BNapus_Darmor_BZH_scaffold_146p00070 Brassica napus HOM05D005203 ORTHO05D006383 3.0e-146 522.3 395 64.8
Thhalv10025208m.g Eutrema salsugineum HOM05D005203 ORTHO05D006383 3.0e-146 522.3 387 65.6
SMO201G0157 Selaginella moellendorffii HOM05D005203 ORTHO05D006383 3.3e-145 518.8 378 66.7
vmacro02339 Vaccinium macrocarpon HOM05D005203 ORTHO05D006383 6.0e-139 498.0 551 51.4
SalBow1G5214 Salvia bowleyana HOM05D005203 ORTHO05D006383 1.1e-135 487.3 368 66.8
Aa31LG6G16700 Aethionema arabicum HOM05D005203 ORTHO05D006383 7.1e-132 474.6 362 65.2
arahy.Tifrunner.gnm1.ann1.Z16TJ0 Arachis hypogaea HOM05D005203 ORTHO05D006383 9.3e-132 474.2 389 62.7
Cpa.g.c28580 Carica papaya HOM05D005203 ORTHO05D006383 1.6e-131 473.4 387 62.0
BcaNung01996 Brassica carinata HOM05D005203 ORTHO05D006383 4.3e-129 465.3 393 61.8
Cfa005368 Carpinus fangiana HOM05D005203 ORTHO05D006383 1.2e-126 457.2 338 68.6
HPP92_022155 Vanilla planifolia HOM05D005203 ORTHO05D006383 2.1e-123 446.4 366 59.3
AagrBONN_evm.TU.Sc2ySwM_362.2915 Anthoceros agrestis HOM05D005203 ORTHO05D006383 1.9e-121 439.9 379 58.8
Mapoly0041s0049 Marchantia polymorpha HOM05D005203 ORTHO05D006383 9.7e-121 437.6 383 55.9
Pp3c22_17330 Physcomitrium patens HOM05D005203 ORTHO05D006383 2.8e-120 436.0 391 56.5
Pp3c12_4490 Physcomitrium patens HOM05D005203 ORTHO05D006383 1.8e-119 433.3 327 60.6
SGA_v2.0_scaffold399G50809 Striga asiatica HOM05D005203 ORTHO05D006383 3.6e-115 419.1 388 58.2
Sabra09G0130500 Salix brachista HOM05D005203 ORTHO05D006383 3.0e-114 416.0 386 57.8
DCAR_026076 Daucus carota HOM05D005203 ORTHO05D006383 1.9e-113 413.3 358 62.0
CBR_g40811 Chara braunii HOM05D005203 ORTHO05D006383 1.8e-106 390.2 343 53.4
Sabra04G0139200 Salix brachista HOM05D005203 ORTHO05D006383 2.3e-106 389.8 390 53.8
AUR62013174 Chenopodium quinoa HOM05D005203 ORTHO05D006383 1.7e-104 383.6 353 58.4
HPP92_004948 Vanilla planifolia HOM05D005203 ORTHO05D006383 1.8e-103 380.2 387 52.5
Rhsim11G0198000 Rhododendron simsii HOM05D005203 ORTHO05D006383 3.6e-99 365.9 328 60.7
Aa31LG1G14200 Aethionema arabicum HOM05D005203 ORTHO05D006383 1.5e-97 360.5 380 51.8
Lj5A171G136 Lonicera japonica HOM05D005203 ORTHO05D006383 8.2e-96 354.8 231 74.0
QL11p056319 Quercus lobata HOM05D005203 ORTHO05D006383 8.5e-93 344.7 231 72.7
Sopen01g054300 Solanum pennellii HOM05D005203 ORTHO05D006383 2.1e-91 340.1 231 70.6
VMungo1309G0298 Vigna mungo HOM05D005203 ORTHO05D006383 3.6e-91 339.3 231 70.1
TAR376G0977 Trochodendron aralioides HOM05D005203 ORTHO05D006383 1.2e-89 334.3 387 48.6
PGSC0003DMG402014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 2.6e-89 333.2 210 75.7
CAN.G1725.2 Capsicum annuum HOM05D005203 ORTHO05D006383 1.3e-88 330.9 210 75.2
CSS0033501 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 2.8e-88 329.7 171 96.5
CSS0046634 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 2.8e-88 329.7 171 96.5
Medtr3g118520 Medicago truncatula HOM05D005203 ORTHO05D006383 4.8e-88 328.9 231 68.8
AUR62010173 Chenopodium quinoa HOM05D005203 ORTHO05D006383 7.0e-87 325.1 348 51.4
CSS0007702 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.2e-86 324.3 162 98.8
COL.COLO4_19776 Corchorus olitorius HOM05D005203 ORTHO05D006383 2.9e-85 319.7 387 49.6
CDE07G0143 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 1.2e-83 314.3 232 65.5
TAR628G1330 Trochodendron aralioides HOM05D005203 ORTHO05D006383 1.4e-82 310.8 366 48.6
ATR0807G194 Amborella trichopoda HOM05D005203 ORTHO05D006383 3.4e-81 306.2 232 65.9
MCO10G329 Micromonas commoda HOM05D005203 ORTHO05D006383 7.5e-81 305.1 338 46.4
Hund06364 Selenicereus undatus HOM05D005203 ORTHO05D006383 1.0e-77 294.7 332 49.1
EL10Ac9g21529 Beta vulgaris HOM05D005203 ORTHO05D006383 1.8e-74 283.9 387 44.4
Eucgr.L00583 Eucalyptus grandis HOM05D005203 ORTHO05D006383 6.1e-67 258.8 152 80.3
Ah.01g009970 Amaranthus hybridus HOM05D005203 ORTHO05D006383 7.3e-60 235.3 187 63.6
ATR0807G110 Amborella trichopoda HOM05D005203 ORTHO05D006383 4.4e-57 226.1 152 67.1
QL11p056323 Quercus lobata HOM05D005203 ORTHO05D006383 4.9e-48 196.1 123 74.8
Medtr3g118525 Medicago truncatula HOM05D005203 ORTHO05D006383 2.4e-47 193.7 126 73.8
Eucgr.H04987 Eucalyptus grandis HOM05D005203 ORTHO05D006383 2.7e-46 190.3 126 69.0
VMungo1309G1049 Vigna mungo HOM05D005203 ORTHO05D006383 6.6e-45 185.7 126 69.0
Lj5A171G135 Lonicera japonica HOM05D005203 ORTHO05D006383 1.1e-42 178.3 127 70.9
MCO01G683 Micromonas commoda HOM05D005203 ORTHO05D006383 1.5e-41 174.5 265 36.2
GSVIVG01002907001 Vitis vinifera HOM05D005203 ORTHO05D006383 1.7e-40 171.0 95 84.2
CDE07G2075 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 2.2e-40 170.6 123 61.8
Nitab4.5_0010601g0030 Nicotiana tabacum HOM05D005203 ORTHO05D006383 1.6e-35 154.5 174 51.7
AL7G13060 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 7.8e-30 135.6 98 68.4
Sc18g0005790 Simmondsia chinensis HOM05D005203 ORTHO05D006383 3.9e-29 133.3 101 63.4
PGSC0003DMG403014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 4.9e-24 116.3 79 68.4
CANSAT78G0806 Cannabis sativa HOM05D005203 ORTHO05D006383 6.4e-24 115.9 75 74.7
Sed0000358 Sechium edule HOM05D005203 ORTHO05D006383 1.9e-23 114.4 109 52.3
SEGI_16108 Sequoiadendron giganteum HOM05D005203 ORTHO05D006383 5.5e-15 86.3 73 57.5
CAN.G533.11 Capsicum annuum HOM05D005203 ORTHO05D006383 1.3e-13 81.6 55 65.5
AL6G14740 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 3.0e-13 80.5 45 82.2
EL10Ac1g01043 Beta vulgaris HOM05D005203 ORTHO05D006383 2.0e-09 67.8 31 87.1


User provided reference genes

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