Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022509 Camellia sinensis var. sinensis HOM05D003176 ORTHO05D043311 1.9e-43 178.7 85 100.0
CSS0047246 Camellia sinensis var. sinensis HOM05D003176 ORTHO05D043311 5.8e-21 104.0 86 67.4
Nitab4.5_0000617g0010 Nicotiana tabacum HOM05D003176 ORTHO05D004011 3.3e-16 88.2 48 79.2
Actinidia01281 Actinidia chinensis HOM05D003176 ORTHO05D004011 2.8e-15 85.1 39 92.3
Actinidia02504 Actinidia chinensis HOM05D003176 ORTHO05D004011 2.8e-15 85.1 39 92.3
CSS0006331 Camellia sinensis var. sinensis HOM05D003176 ORTHO05D004011 2.8e-15 85.1 39 92.3
vmacro20819 Vaccinium macrocarpon HOM05D003176 ORTHO05D004011 2.8e-15 85.1 39 92.3
Duzib170G0992 Durio zibethinus HOM05D003176 ORTHO05D004011 3.7e-15 84.7 39 92.3
Glyma.09G059200 Glycine max HOM05D003176 ORTHO05D004011 4.8e-15 84.3 39 92.3
Glyma.15G165500 Glycine max HOM05D003176 ORTHO05D004011 4.8e-15 84.3 39 92.3
Oeu006849.1 Olea europaea HOM05D003176 ORTHO05D004011 8.2e-15 83.6 39 89.7
CAN.G333.10 Capsicum annuum HOM05D003176 ORTHO05D004011 1.1e-14 83.2 37 94.6
Dinv25436 Davidia involucrata HOM05D003176 ORTHO05D004011 1.1e-14 83.2 39 89.7
Nitab4.5_0003468g0010 Nicotiana tabacum HOM05D003176 ORTHO05D004011 1.1e-14 83.2 37 94.6
Peaxi162Scf01600g00024 Petunia axillaris HOM05D003176 ORTHO05D004011 1.1e-14 83.2 37 94.6
CANSAT11G0358 Cannabis sativa HOM05D003176 ORTHO05D004011 1.4e-14 82.8 39 89.7
COL.COLO4_08418 Corchorus olitorius HOM05D003176 ORTHO05D004011 1.4e-14 82.8 39 89.7
DCAR_019802 Daucus carota HOM05D003176 ORTHO05D004011 1.4e-14 82.8 39 89.7
Dinv41170 Davidia involucrata HOM05D003176 ORTHO05D004011 1.4e-14 82.8 39 89.7
Duzib150G0644 Durio zibethinus HOM05D003176 ORTHO05D004011 1.4e-14 82.8 39 89.7
Duzib168G1099 Durio zibethinus HOM05D003176 ORTHO05D004011 1.4e-14 82.8 39 89.7
FvH4_4g07350 Fragaria vesca HOM05D003176 ORTHO05D004011 1.4e-14 82.8 39 89.7
FAN07G0459 Fragaria x ananassa HOM05D003176 ORTHO05D004011 1.4e-14 82.8 39 89.7
FAN12G1948 Fragaria x ananassa HOM05D003176 ORTHO05D004011 1.4e-14 82.8 39 89.7
FAN17G1758 Fragaria x ananassa HOM05D003176 ORTHO05D004011 1.4e-14 82.8 39 89.7
FAN22G0108 Fragaria x ananassa HOM05D003176 ORTHO05D004011 1.4e-14 82.8 39 89.7
Prupe.1G076400 Prunus persica HOM05D003176 ORTHO05D004011 1.4e-14 82.8 39 89.7
QL02p046513 Quercus lobata HOM05D003176 ORTHO05D004011 1.4e-14 82.8 39 89.7
RcHm_v2.0_Chr4g0399721 Rosa chinensis HOM05D003176 ORTHO05D004011 1.4e-14 82.8 39 89.7
Thecc.09G185500 Theobroma cacao HOM05D003176 ORTHO05D004011 1.4e-14 82.8 39 89.7
MELO3C003977.2 Cucumis melo HOM05D003176 ORTHO05D004011 1.8e-14 82.4 39 87.2
CsaV3_2G008700 Cucumis sativus L. HOM05D003176 ORTHO05D004011 1.8e-14 82.4 39 87.2
Lalb_Chr07g0180631 Lupinus albus HOM05D003176 ORTHO05D004011 1.8e-14 82.4 37 94.6
ClCG11G011790 Citrullus lanatus HOM05D003176 ORTHO05D004011 2.4e-14 82.0 39 87.2
Peaxi162Scf00124g00614 Petunia axillaris HOM05D003176 ORTHO05D004011 2.4e-14 82.0 37 94.6
Rhsim01G0118100 Rhododendron simsii HOM05D003176 ORTHO05D004011 2.4e-14 82.0 39 89.7
Sed0012562 Sechium edule HOM05D003176 ORTHO05D004011 2.4e-14 82.0 39 87.2
Sed0013378 Sechium edule HOM05D003176 ORTHO05D004011 2.4e-14 82.0 39 87.2
PGSC0003DMG400023179 Solanum tuberosum HOM05D003176 ORTHO05D004011 2.4e-14 82.0 37 94.6
arahy.Tifrunner.gnm1.ann1.LHRZ75 Arachis hypogaea HOM05D003176 ORTHO05D004011 3.1e-14 81.6 39 89.7
arahy.Tifrunner.gnm1.ann1.LRN56Y Arachis hypogaea HOM05D003176 ORTHO05D004011 3.1e-14 81.6 39 89.7
Lj4g0019846 Lotus japonicus HOM05D003176 ORTHO05D004011 3.1e-14 81.6 39 89.7
Lj6g0011356 Lotus japonicus HOM05D003176 ORTHO05D004011 3.1e-14 81.6 39 89.7
TWI32G0804 Tripterygium wilfordii HOM05D003176 ORTHO05D004011 3.1e-14 81.6 39 87.2
TWI63G0043 Tripterygium wilfordii HOM05D003176 ORTHO05D004011 3.1e-14 81.6 39 87.2
VMungo1309G1566 Vigna mungo HOM05D003176 ORTHO05D004011 3.1e-14 81.6 50 70.0
GSVIVG01010868001 Vitis vinifera HOM05D003176 ORTHO05D004011 3.1e-14 81.6 39 87.2
EL10Ac8g18330 Beta vulgaris HOM05D003176 ORTHO05D004011 4.1e-14 81.3 39 87.2
AUR62021345 Chenopodium quinoa HOM05D003176 ORTHO05D004011 4.1e-14 81.3 39 87.2
AUR62033259 Chenopodium quinoa HOM05D003176 ORTHO05D004011 4.1e-14 81.3 39 87.2
Ca_21252_v3 Cicer arietinum L. HOM05D003176 ORTHO05D004011 4.1e-14 81.3 40 87.5
Ciclev10007458m.g Citrus clementina HOM05D003176 ORTHO05D004011 5.3e-14 80.9 39 87.2
Haze_22014 Corylus avellana HOM05D003176 ORTHO05D004011 5.3e-14 80.9 39 87.2
Gohir.A08G080400 Gossypium hirsutum HOM05D003176 ORTHO05D004011 5.3e-14 80.9 39 87.2
Gohir.D08G090300 Gossypium hirsutum HOM05D003176 ORTHO05D004011 5.3e-14 80.9 39 87.2
Gorai.004G095300 Gossypium raimondii HOM05D003176 ORTHO05D004011 5.3e-14 80.9 39 87.2
MBI16_g05838_MAGBIO Magnolia biondii HOM05D003176 ORTHO05D004011 5.3e-14 80.9 37 91.9
MD16G1249600 Malus domestica HOM05D003176 ORTHO05D004011 5.3e-14 80.9 39 87.2
Solyc02g014450.3 Solanum lycopersicum HOM05D003176 ORTHO05D004011 5.3e-14 80.9 37 91.9
Sopen02g003110 Solanum pennellii HOM05D003176 ORTHO05D004011 5.3e-14 80.9 37 91.9
Glyma.13G100200 Glycine max HOM05D003176 ORTHO05D004011 6.9e-14 80.5 39 87.2
Medtr2g037930 Medicago truncatula HOM05D003176 ORTHO05D004011 6.9e-14 80.5 39 87.2
Phvul.003G141700 Phaseolus vulgaris HOM05D003176 ORTHO05D004011 6.9e-14 80.5 39 84.6
TPR.G7915 Trifolium pratense HOM05D003176 ORTHO05D004011 6.9e-14 80.5 39 87.2
VMungo1215G3277 Vigna mungo HOM05D003176 ORTHO05D004011 6.9e-14 80.5 39 84.6
CiPaw.08G033000 Carya illinoinensis HOM05D003176 ORTHO05D004011 9.0e-14 80.1 39 84.6
Phvul.009G236600 Phaseolus vulgaris HOM05D003176 ORTHO05D004011 9.0e-14 80.1 39 87.2
Sc08g0004700 Simmondsia chinensis HOM05D003176 ORTHO05D004011 9.0e-14 80.1 39 87.2
Solyc07g008840.3 Solanum lycopersicum HOM05D003176 ORTHO05D004011 9.0e-14 80.1 37 91.9
Sopen07g004770 Solanum pennellii HOM05D003176 ORTHO05D004011 9.0e-14 80.1 37 91.9
PGSC0003DMG400028746 Solanum tuberosum HOM05D003176 ORTHO05D004011 9.0e-14 80.1 37 91.9
Atru.chr7.764 Acer truncatum HOM05D003176 ORTHO05D004011 1.2e-13 79.7 39 87.2
Ah.14g083560 Amaranthus hybridus HOM05D003176 ORTHO05D004011 1.2e-13 79.7 39 84.6
ATR0626G188 Amborella trichopoda HOM05D003176 ORTHO05D004011 1.2e-13 79.7 37 91.9
ECA240G0293 Erigeron canadensis HOM05D003176 ORTHO05D004011 1.2e-13 79.7 39 84.6
Glyma.17G059700 Glycine max HOM05D003176 ORTHO05D004011 1.2e-13 79.7 39 84.6
HanXRQChr03g0068441 Helianthus annuus HOM05D003176 ORTHO05D004011 1.2e-13 79.7 39 84.6
Lsat_1_v5_gn_7_56381 Lactuca sativa HOM05D003176 ORTHO05D004011 1.2e-13 79.7 39 82.1
Lalb_Chr23g0276801 Lupinus albus HOM05D003176 ORTHO05D004011 1.2e-13 79.7 39 87.2
Cfa013447 Carpinus fangiana HOM05D003176 ORTHO05D004011 1.5e-13 79.3 39 84.6
Cc00_g10750 Coffea canephora HOM05D003176 ORTHO05D004011 1.5e-13 79.3 39 84.6
ECA234G0289 Erigeron canadensis HOM05D003176 ORTHO05D004011 1.5e-13 79.3 39 84.6
Medtr4g127450 Medicago truncatula HOM05D003176 ORTHO05D004011 1.5e-13 79.3 40 85.0
Potri.006G076000 Populus trichocarpa HOM05D003176 ORTHO05D004011 1.5e-13 79.3 39 84.6
Potri.018G143100 Populus trichocarpa HOM05D003176 ORTHO05D004011 1.5e-13 79.3 39 84.6
Sabra06G0056800 Salix brachista HOM05D003176 ORTHO05D004011 1.5e-13 79.3 39 84.6
Sabra18G0116900 Salix brachista HOM05D003176 ORTHO05D004011 1.5e-13 79.3 39 84.6
Ca_02099_v3 Cicer arietinum L. HOM05D003176 ORTHO05D004011 2.0e-13 79.0 39 84.6
MD13G1242400 Malus domestica HOM05D003176 ORTHO05D004011 2.0e-13 79.0 39 84.6
Nn8g40842 Nelumbo nucifera HOM05D003176 ORTHO05D004011 2.0e-13 79.0 39 84.6
Lalb_Chr11g0074831 Lupinus albus HOM05D003176 ORTHO05D004011 2.6e-13 78.6 39 84.6
Oeu044676.1 Olea europaea HOM05D003176 ORTHO05D004011 2.6e-13 78.6 39 84.6
Oeu044677.1 Olea europaea HOM05D003176 ORTHO05D004011 2.6e-13 78.6 39 84.6
PSO063G3607 Papaver somniferum HOM05D003176 ORTHO05D004011 2.6e-13 78.6 39 84.6
Psat4g013240 Pisum sativum HOM05D003176 ORTHO05D004011 2.6e-13 78.6 40 82.5
SalBow5G0408 Salvia bowleyana HOM05D003176 ORTHO05D004011 2.6e-13 78.6 39 87.2
TPR.G35076 Trifolium pratense HOM05D003176 ORTHO05D004011 2.6e-13 78.6 40 85.0
Atru.chr7.784 Acer truncatum HOM05D003176 ORTHO05D004011 3.4e-13 78.2 39 84.6
HanXRQChr10g0308831 Helianthus annuus HOM05D003176 ORTHO05D004011 3.4e-13 78.2 39 84.6
Lj5A672T28 Lonicera japonica HOM05D003176 ORTHO05D004011 3.4e-13 78.2 39 84.6
PSO170G4191 Papaver somniferum HOM05D003176 ORTHO05D004011 4.5e-13 77.8 39 84.6
SEGI_03285 Sequoiadendron giganteum HOM05D003176 ORTHO05D004011 4.5e-13 77.8 37 86.5
THA.LOC104817780 Tarenaya hassleriana HOM05D003176 ORTHO05D004011 4.5e-13 77.8 39 82.1
Cpa.g.c27842.3 Carica papaya HOM05D003176 ORTHO05D004011 5.9e-13 77.4 39 84.6
Lalb_Chr12g0199591 Lupinus albus HOM05D003176 ORTHO05D004011 5.9e-13 77.4 39 84.6
CiPaw.07G196500 Carya illinoinensis HOM05D003176 ORTHO05D004011 1.0e-12 76.6 39 84.6
Eucgr.C00121 Eucalyptus grandis HOM05D003176 ORTHO05D004011 1.0e-12 76.6 39 84.6
arahy.Tifrunner.gnm1.ann1.06L84B Arachis hypogaea HOM05D003176 ORTHO05D004011 1.3e-12 76.3 39 84.6
arahy.Tifrunner.gnm1.ann1.DF4URC Arachis hypogaea HOM05D003176 ORTHO05D004011 1.3e-12 76.3 39 84.6
MBI13_g01740_MAGBIO Magnolia biondii HOM05D003176 ORTHO05D004011 1.3e-12 76.3 37 89.2
Oeu064554.1 Olea europaea HOM05D003176 ORTHO05D004011 1.3e-12 76.3 39 82.1
PGR142G3732 Punica granatum HOM05D003176 ORTHO05D004011 1.3e-12 76.3 39 84.6
TAR625G0715 Trochodendron aralioides HOM05D003176 ORTHO05D004011 1.3e-12 76.3 39 79.5
SEGI_22652 Sequoiadendron giganteum HOM05D003176 ORTHO05D004011 1.7e-12 75.9 39 82.1
Aqoxy7G02785 Aquilegia oxysepala HOM05D003176 ORTHO05D004011 2.9e-12 75.1 39 82.1
Migut.L01886 Erythranthe guttata HOM05D003176 ORTHO05D004011 2.9e-12 75.1 37 86.5
Aa31LG3G13110 Aethionema arabicum HOM05D003176 ORTHO05D004011 3.8e-12 74.7 39 79.5
AL161U10040 Arabidopsis lyrata HOM05D003176 ORTHO05D004011 3.8e-12 74.7 39 79.5
AL8G33180 Arabidopsis lyrata HOM05D003176 ORTHO05D004011 3.8e-12 74.7 39 79.5
AT5G57210 Arabidopsis thaliana HOM05D003176 ORTHO05D004011 3.8e-12 74.7 39 79.5
BcaB08g36083 Brassica carinata HOM05D003176 ORTHO05D004011 3.8e-12 74.7 39 79.5
BcaC04g19989 Brassica carinata HOM05D003176 ORTHO05D004011 3.8e-12 74.7 39 79.5
A10p14610 Brassica napus HOM05D003176 ORTHO05D004011 3.8e-12 74.7 39 79.5
C09p49040 Brassica napus HOM05D003176 ORTHO05D004011 3.8e-12 74.7 39 79.5
BolC9t57755H Brassica oleracea HOM05D003176 ORTHO05D004011 3.8e-12 74.7 39 79.5
BraA10t43547Z Brassica rapa HOM05D003176 ORTHO05D004011 3.8e-12 74.7 39 79.5
Carub.0008s1772 Capsella rubella HOM05D003176 ORTHO05D004011 3.8e-12 74.7 39 79.5
CARHR271000 Cardamine hirsuta HOM05D003176 ORTHO05D004011 3.8e-12 74.7 39 79.5
Thhalv10012758m.g Eutrema salsugineum HOM05D003176 ORTHO05D004011 3.8e-12 74.7 39 79.5
Sp6g18940 Schrenkiella parvula HOM05D003176 ORTHO05D004011 3.8e-12 74.7 39 79.5
AL7G22290 Arabidopsis lyrata HOM05D003176 ORTHO05D004011 5.0e-12 74.3 39 79.5
AT4G29950 Arabidopsis thaliana HOM05D003176 ORTHO05D004011 5.0e-12 74.3 39 79.5
Thhalv10024395m.g Eutrema salsugineum HOM05D003176 ORTHO05D004011 5.0e-12 74.3 39 79.5
PGR044G1774 Punica granatum HOM05D003176 ORTHO05D004011 5.0e-12 74.3 39 79.5
Sp7g27760 Schrenkiella parvula HOM05D003176 ORTHO05D004011 5.0e-12 74.3 39 79.5
THA.LOC104814653 Tarenaya hassleriana HOM05D003176 ORTHO05D004011 5.0e-12 74.3 39 82.1
SalBow3G1319 Salvia bowleyana HOM05D003176 ORTHO05D004011 6.5e-12 73.9 39 82.1
Manes.14G157900 Manihot esculenta HOM05D003176 ORTHO05D004011 8.5e-12 73.6 39 76.9
Hund09057 Selenicereus undatus HOM05D003176 ORTHO05D004011 8.5e-12 73.6 39 79.5
Aa31LG2G20600 Aethionema arabicum HOM05D003176 ORTHO05D004011 1.4e-11 72.8 39 76.9
Gohir.D13G213200 Gossypium hirsutum HOM05D003176 ORTHO05D004011 1.4e-11 72.8 39 76.9
Gorai.013G243500 Gossypium raimondii HOM05D003176 ORTHO05D004011 1.4e-11 72.8 39 76.9
SGA_v2.0_scaffold231G43412 Striga asiatica HOM05D003176 ORTHO05D004011 1.4e-11 72.8 39 79.5
unitig_22.g5163 Utricularia gibba HOM05D003176 ORTHO05D004011 1.4e-11 72.8 39 76.9
BcaC09g51765 Brassica carinata HOM05D003176 ORTHO05D004011 1.9e-11 72.4 39 76.9
A01p08150 Brassica napus HOM05D003176 ORTHO05D004011 1.9e-11 72.4 39 76.9
C01p09120 Brassica napus HOM05D003176 ORTHO05D004011 1.9e-11 72.4 39 76.9
BolC1t00903H Brassica oleracea HOM05D003176 ORTHO05D004011 1.9e-11 72.4 39 76.9
BraA01t00762Z Brassica rapa HOM05D003176 ORTHO05D004011 1.9e-11 72.4 39 76.9
Psat1g145440 Pisum sativum HOM05D003176 ORTHO05D004011 1.9e-11 72.4 39 79.5
Carub.0007s1069 Capsella rubella HOM05D003176 ORTHO05D004011 2.5e-11 72.0 39 76.9
CARHR237870 Cardamine hirsuta HOM05D003176 ORTHO05D004011 2.5e-11 72.0 39 76.9
MSTRG.26541 Avicennia marina HOM05D003176 ORTHO05D004011 3.2e-11 71.6 39 84.6
Migut.J00803 Erythranthe guttata HOM05D003176 ORTHO05D004011 3.2e-11 71.6 37 81.1
Zm00001eb035750 Zea mays HOM05D003176 ORTHO05D004011 3.2e-11 71.6 37 83.8
CDE06G0860 Ceratophyllum demersum HOM05D003176 ORTHO05D004011 4.2e-11 71.2 37 83.8
SMO364G0786 Selaginella moellendorffii HOM05D003176 ORTHO05D004011 4.2e-11 71.2 37 73.0
C07p03190 Brassica napus HOM05D003176 ORTHO05D004011 5.5e-11 70.9 39 74.4
Gohir.A13G208800 Gossypium hirsutum HOM05D003176 ORTHO05D004011 5.5e-11 70.9 39 74.4
Os08g0518100 Oryza sativa ssp. japonica HOM05D003176 ORTHO05D004011 5.5e-11 70.9 37 83.8
CARHR109700 Cardamine hirsuta HOM05D003176 ORTHO05D004011 7.2e-11 70.5 40 70.0
HanXRQChr12g0358501 Helianthus annuus HOM05D003176 ORTHO05D004011 1.2e-10 69.7 39 76.9
Sp3g32610 Schrenkiella parvula HOM05D003176 ORTHO05D004011 1.2e-10 69.7 39 74.4
SGA_v2.0_scaffold31G12758 Striga asiatica HOM05D003176 ORTHO05D004011 1.2e-10 69.7 45 68.9
HPP92_017388 Vanilla planifolia HOM05D003176 ORTHO05D004011 1.2e-10 69.7 39 76.9
SGA_v2.0_scaffold491G52431 Striga asiatica HOM05D003176 ORTHO05D004011 1.6e-10 69.3 39 76.9
AagrBONN_evm.TU.Sc2ySwM_228.3481 Anthoceros agrestis HOM05D003176 ORTHO05D004011 3.6e-10 68.2 37 73.0
CDE02G1474 Ceratophyllum demersum HOM05D003176 ORTHO05D004011 3.6e-10 68.2 37 81.1
THA.LOC104820008 Tarenaya hassleriana HOM05D003176 ORTHO05D004011 3.6e-10 68.2 39 76.9
Lalb_Chr08g0231781 Lupinus albus HOM05D003176 ORTHO05D004011 7.9e-10 67.0 39 71.8
Lalb_Chr08g0231881 Lupinus albus HOM05D003176 ORTHO05D004011 7.9e-10 67.0 39 71.8
Carub.0003s3347 Capsella rubella HOM05D003176 ORTHO05D004011 1.0e-09 66.6 40 70.0
Mapoly0002s0075 Marchantia polymorpha HOM05D003176 ORTHO05D004011 1.0e-09 66.6 49 53.1
AT2G19240 Arabidopsis thaliana HOM05D003176 ORTHO05D004011 1.8e-09 65.9 40 70.0
HPP92_017123 Vanilla planifolia HOM05D003176 ORTHO05D004011 3.9e-09 64.7 39 71.8
HPP92_010793 Vanilla planifolia HOM05D003176 ORTHO05D004011 6.7e-09 63.9 36 77.8
Zm00001eb389150 Zea mays HOM05D003176 ORTHO05D004011 6.7e-09 63.9 39 66.7
Os06g0661700 Oryza sativa ssp. japonica HOM05D003176 ORTHO05D004011 8.8e-09 63.5 39 66.7
Aa31LG8G16270 Aethionema arabicum HOM05D003176 ORTHO05D004011 1.5e-08 62.8 39 69.2
Oeu018816.1 Olea europaea HOM05D003176 ORTHO05D004011 3.1e-06 55.1 29 82.8


User provided reference genes

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