Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.7e-67 259.2 131 100.0
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 4.1e-66 254.6 131 98.5
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.2e-65 253.1 131 96.9
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.2e-65 253.1 131 96.9
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 5.6e-39 164.5 128 70.3
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.2e-33 146.7 126 62.7
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 4.6e-33 144.8 128 57.0
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 2.3e-32 142.5 125 59.2
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 3.0e-32 142.1 126 65.1
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 5.1e-32 141.4 125 62.4
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 1.5e-31 139.8 122 61.5
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 1.9e-31 139.4 119 63.9
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 9.6e-31 137.1 127 61.4
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 9.6e-31 137.1 125 61.6
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 1.6e-30 136.3 131 59.5
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 3.6e-30 135.2 125 62.4
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 3.6e-30 135.2 125 60.8
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 6.2e-30 134.4 125 60.0
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 2.4e-29 132.5 125 59.2
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.2e-28 130.2 125 59.2
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 2.6e-28 129.0 125 53.6
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 3.4e-28 128.6 134 58.2
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 3.4e-28 128.6 125 53.6
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 4.5e-28 128.3 126 58.7
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 7.6e-28 127.5 125 57.6
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 9.9e-28 127.1 126 56.3
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 9.9e-28 127.1 127 57.5
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 2.2e-27 125.9 126 57.1
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 2.9e-27 125.6 123 55.3
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 6.4e-27 124.4 128 59.4
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 8.4e-27 124.0 123 57.7
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 1.1e-26 123.6 127 55.9
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 2.4e-26 122.5 126 55.6
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 4.2e-26 121.7 132 56.1
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 2.1e-25 119.4 126 57.1
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 2.7e-25 119.0 139 53.2
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 2.7e-25 119.0 132 55.3
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 4.6e-25 118.2 126 56.3
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 1.8e-24 116.3 121 52.1
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 3.0e-24 115.5 127 52.0
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 3.0e-24 115.5 121 56.2
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 3.9e-24 115.2 129 55.0
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 5.1e-24 114.8 96 65.6
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 1.1e-23 113.6 131 51.9
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 1.5e-23 113.2 127 53.5
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 2.5e-23 112.5 128 53.9
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 4.3e-23 111.7 116 54.3
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 5.6e-23 111.3 122 57.4
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 5.6e-23 111.3 129 53.5
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 7.4e-23 110.9 128 52.3
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 1.6e-22 109.8 129 51.9
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 2.8e-22 109.0 123 50.4
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 3.7e-22 108.6 123 50.4
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 3.7e-22 108.6 127 49.6
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 3.7e-22 108.6 126 50.0
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 4.8e-22 108.2 124 51.6
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 4.8e-22 108.2 130 50.0
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 8.1e-22 107.5 121 52.1
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.1e-21 107.1 127 55.1
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 1.1e-21 107.1 119 54.6
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.4e-21 106.7 132 49.2
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 4.0e-21 105.1 131 47.3
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 4.0e-21 105.1 127 51.2
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 5.3e-21 104.8 135 49.6
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 1.2e-20 103.6 123 48.8
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 1.2e-20 103.6 122 53.3
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 1.5e-20 103.2 133 50.4
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 1.5e-20 103.2 132 49.2
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 1.5e-20 103.2 132 48.5
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 2.0e-20 102.8 149 47.0
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 2.6e-20 102.4 123 48.0
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 5.8e-20 101.3 137 48.9
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 7.6e-20 100.9 128 49.2
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 7.6e-20 100.9 117 50.4
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 1.3e-19 100.1 122 50.0
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 1.3e-19 100.1 128 50.8
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.7e-19 99.8 120 47.5
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.7e-19 99.8 123 48.8
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 3.8e-19 98.6 125 50.4
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 3.8e-19 98.6 117 47.9
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 3.8e-19 98.6 123 49.6
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 3.8e-19 98.6 123 49.6
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 3.8e-19 98.6 127 44.9
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 1.1e-18 97.1 123 48.8
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 1.4e-18 96.7 123 48.8
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 1.4e-18 96.7 124 49.2
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 1.4e-18 96.7 116 49.1
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 1.4e-18 96.7 123 48.8
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.9e-18 96.3 106 55.7
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.9e-18 96.3 125 44.8
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 2.5e-18 95.9 126 48.4
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 5.5e-18 94.7 141 45.4
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 7.1e-18 94.4 117 47.9
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 7.1e-18 94.4 143 44.8
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 7.1e-18 94.4 125 44.0
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 1.2e-17 93.6 125 48.0
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 1.2e-17 93.6 125 48.0
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 1.6e-17 93.2 135 48.1
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 2.7e-17 92.4 127 46.5
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 2.7e-17 92.4 132 44.7
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 3.5e-17 92.0 130 47.7
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 6.0e-17 91.3 106 54.7
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 7.9e-17 90.9 124 48.4
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 7.9e-17 90.9 124 48.4
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 7.9e-17 90.9 124 48.4
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.0e-16 90.5 125 43.2
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 1.3e-16 90.1 126 46.8
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 3.0e-16 89.0 143 43.4
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 3.9e-16 88.6 122 45.9
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 3.9e-16 88.6 122 45.9
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 3.9e-16 88.6 123 45.5
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 3.9e-16 88.6 125 46.4
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 8.7e-16 87.4 124 44.4
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 1.1e-15 87.0 122 45.1
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 1.1e-15 87.0 120 48.3
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 1.5e-15 86.7 126 41.3
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 1.5e-15 86.7 124 43.5
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 1.5e-15 86.7 124 43.5
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.5e-15 86.7 124 43.5
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 1.9e-15 86.3 138 40.6
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 1.9e-15 86.3 129 46.5
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 7.4e-15 84.3 130 43.8
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 1.3e-14 83.6 108 45.4
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 1.6e-14 83.2 126 42.9
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 3.7e-14 82.0 125 43.2
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 3.7e-14 82.0 124 46.0
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 3.7e-14 82.0 124 46.0
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 8.2e-14 80.9 116 42.2
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 1.1e-13 80.5 146 40.4
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.1e-13 80.5 125 42.4
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.1e-13 80.5 127 43.3
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 1.4e-13 80.1 121 47.9
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 1.4e-13 80.1 128 40.6
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 1.8e-13 79.7 169 37.3
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 5.3e-13 78.2 136 39.7
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 6.9e-13 77.8 114 45.6
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 1.2e-12 77.0 117 45.3
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.6e-12 75.9 115 42.6
HPP92_017412 Vanilla planifolia HOM05D001798 ORTHO05D005040 3.4e-12 75.5 166 32.5
ATR0580G067 Amborella trichopoda HOM05D001798 ORTHO05D005040 4.5e-12 75.1 114 39.5
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 5.9e-12 74.7 126 37.3
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 5.9e-12 74.7 119 43.7
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 7.6e-12 74.3 85 47.1
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 1.0e-11 73.9 103 43.7
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 1.0e-11 73.9 103 43.7
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.0e-11 73.9 129 37.2
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 1.0e-11 73.9 133 39.8
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 1.3e-11 73.6 118 43.2
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 1.7e-11 73.2 134 36.6
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 2.2e-11 72.8 138 37.7
Os08g0448100 Oryza sativa ssp. japonica HOM05D001798 ORTHO05D005040 1.6e-09 66.6 144 34.7
HPP92_010486 Vanilla planifolia HOM05D001798 ORTHO05D005040 1.6e-09 66.6 152 38.2
Sed0003670 Sechium edule HOM05D001798 ORTHO05D022392 2.7e-09 65.9 132 40.2
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 6.1e-09 64.7 124 43.5
Nitab4.5_0004131g0060 Nicotiana tabacum HOM05D001798 ORTHO05D005040 1.0e-08 63.9 118 38.1
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 2.3e-08 62.8 114 37.7
Nitab4.5_0004131g0070 Nicotiana tabacum HOM05D001798 ORTHO05D005040 3.0e-08 62.4 127 37.8
SHI04313 Sapria himalayana HOM05D001798 ORTHO05D005040 1.1e-07 60.5 97 46.4
MELO3C013791.2 Cucumis melo HOM05D001798 ORTHO05D022392 1.5e-07 60.1 46 60.9
ClCG10G000980 Citrullus lanatus HOM05D001798 ORTHO05D022392 3.3e-07 58.9 39 69.2
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 7.4e-07 57.8 118 37.3
Nn2g12703 Nelumbo nucifera HOM05D001798 ORTHO05D005040 1.6e-06 56.6 119 35.3
MBI16_g35928_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 2.2e-06 56.2 94 35.1
Lj1g0012048 Lotus japonicus HOM05D021496 ORTHO05D022761 6.3e-06 54.7 109 37.6


User provided reference genes

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