Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022501 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 1.8e-201 706.1 451 100.0
Actinidia11451 Actinidia chinensis HOM05D004237 ORTHO05D005002 5.2e-177 624.8 452 84.3
Actinidia28992 Actinidia chinensis HOM05D004237 ORTHO05D005002 9.2e-174 614.0 451 84.3
Dinv27207 Davidia involucrata HOM05D004237 ORTHO05D005002 4.9e-167 591.7 450 77.8
Dinv38185 Davidia involucrata HOM05D004237 ORTHO05D005002 3.6e-162 575.5 450 77.8
vmacro15560 Vaccinium macrocarpon HOM05D004237 ORTHO05D005002 2.6e-160 569.3 451 81.2
Rhsim02G0061200 Rhododendron simsii HOM05D004237 ORTHO05D005002 1.5e-155 553.5 452 78.5
RhsimUnG0035800 Rhododendron simsii HOM05D004237 ORTHO05D005002 1.5e-155 553.5 452 78.5
Hma1.2p1_2958F.1_g330800 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 3.4e-152 542.3 457 75.3
PGSC0003DMG400026424 Solanum tuberosum HOM05D004237 ORTHO05D005002 7.4e-147 524.6 452 72.6
DCAR_030819 Daucus carota HOM05D004237 ORTHO05D005002 9.9e-144 514.2 449 73.1
Peaxi162Scf00047g00110 Petunia axillaris HOM05D004237 ORTHO05D005002 5.5e-142 508.4 451 69.2
Oeu063463.1 Olea europaea HOM05D004237 ORTHO05D005002 1.0e-140 504.2 453 68.2
Solyc09g092210.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 5.1e-140 501.9 453 74.0
Sopen09g035130 Solanum pennellii HOM05D004237 ORTHO05D005002 4.3e-139 498.8 453 73.5
Oeu025033.1 Olea europaea HOM05D004237 ORTHO05D005002 1.4e-137 493.8 452 70.8
Atru.chr4.1600 Acer truncatum HOM05D004237 ORTHO05D005002 1.3e-135 487.3 461 65.9
Manes.15G056100 Manihot esculenta HOM05D004237 ORTHO05D005002 1.7e-135 486.9 466 66.3
Ciclev10004964m.g Citrus clementina HOM05D004237 ORTHO05D005002 1.9e-134 483.4 463 68.5
CAN.G1565.17 Capsicum annuum HOM05D004237 ORTHO05D005002 9.3e-134 481.1 453 70.4
Nitab4.5_0007828g0040 Nicotiana tabacum HOM05D004237 ORTHO05D005002 3.0e-132 476.1 454 69.4
Thecc.04G196500 Theobroma cacao HOM05D004237 ORTHO05D005002 5.7e-131 471.9 468 67.9
Haze_11643 Corylus avellana HOM05D004237 ORTHO05D005002 1.6e-130 470.3 457 70.0
Cpa.g.sc83.32 Carica papaya HOM05D004237 ORTHO05D005002 1.4e-129 467.2 460 67.0
CiPaw.01G118000 Carya illinoinensis HOM05D004237 ORTHO05D005002 1.2e-128 464.2 457 68.3
Cfa014954 Carpinus fangiana HOM05D004237 ORTHO05D005002 5.9e-128 461.8 456 68.9
Ca_17976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 2.2e-127 459.9 465 61.5
Medtr8g085190 Medicago truncatula HOM05D004237 ORTHO05D005002 1.4e-126 457.2 462 63.0
Sabra16G0201600 Salix brachista HOM05D004237 ORTHO05D005002 1.4e-126 457.2 467 59.5
Manes.03G145100 Manihot esculenta HOM05D004237 ORTHO05D005002 3.2e-126 456.1 463 60.5
MD04G1016300 Malus domestica HOM05D004237 ORTHO05D005002 4.6e-125 452.2 477 57.9
VMungo0251G2499 Vigna mungo HOM05D004237 ORTHO05D005002 6.1e-125 451.8 460 63.7
CANSAT78G0306 Cannabis sativa HOM05D004237 ORTHO05D005002 7.9e-125 451.4 466 65.7
MSTRG.21980 Avicennia marina HOM05D004237 ORTHO05D005002 1.0e-124 451.1 452 58.8
Potri.001G318600 Populus trichocarpa HOM05D004237 ORTHO05D005002 3.0e-124 449.5 466 66.1
Lj4g0001711 Lotus japonicus HOM05D004237 ORTHO05D005002 5.1e-124 448.7 472 58.1
Sabra17G0051800 Salix brachista HOM05D004237 ORTHO05D005002 1.5e-123 447.2 465 64.9
Phvul.003G050200 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 2.2e-122 443.4 463 65.0
Sc13g0000310 Simmondsia chinensis HOM05D004237 ORTHO05D005002 2.2e-122 443.4 451 62.5
arahy.Tifrunner.gnm1.ann1.BLV0FA Arachis hypogaea HOM05D004237 ORTHO05D005002 4.5e-120 435.6 471 59.7
arahy.Tifrunner.gnm1.ann1.T9JHLZ Arachis hypogaea HOM05D004237 ORTHO05D005002 4.5e-120 435.6 471 59.7
Prupe.1G163000 Prunus persica HOM05D004237 ORTHO05D005002 4.2e-118 429.1 463 63.3
Duzib212G0922 Durio zibethinus HOM05D004237 ORTHO05D005002 1.6e-117 427.2 463 60.9
MD13G1282300 Malus domestica HOM05D004237 ORTHO05D005002 7.9e-117 424.9 473 59.8
Lalb_Chr07g0186771 Lupinus albus HOM05D004237 ORTHO05D005002 2.3e-116 423.3 456 61.8
FvH4_4g13400 Fragaria vesca HOM05D004237 ORTHO05D005002 3.0e-116 422.9 461 64.2
Potri.017G058200 Populus trichocarpa HOM05D004237 ORTHO05D005002 6.7e-116 421.8 482 56.8
RcHm_v2.0_Chr4g0413771 Rosa chinensis HOM05D004237 ORTHO05D005002 6.7e-116 421.8 465 63.2
GSVIVG01021000001 Vitis vinifera HOM05D004237 ORTHO05D005002 5.7e-115 418.7 452 56.2
FAN12G1632 Fragaria x ananassa HOM05D004237 ORTHO05D005002 4.8e-114 415.6 455 64.2
Gohir.A10G128300 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.2e-112 411.0 463 62.9
AUR62020847 Chenopodium quinoa HOM05D004237 ORTHO05D005002 1.0e-111 407.9 422 63.7
QL06p026437 Quercus lobata HOM05D004237 ORTHO05D005002 6.1e-109 398.7 459 56.9
FAN07G1461 Fragaria x ananassa HOM05D004237 ORTHO05D005002 1.8e-108 397.1 455 62.4
Gorai.011G152800 Gossypium raimondii HOM05D004237 ORTHO05D005002 6.3e-106 388.7 443 60.3
CsaV3_2G011170 Cucumis sativus L. HOM05D004237 ORTHO05D005002 1.8e-105 387.1 455 59.6
MELO3C020354.2 Cucumis melo HOM05D004237 ORTHO05D005002 9.1e-105 384.8 455 59.3
Gohir.D10G137600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 2.6e-104 383.3 443 62.1
TAR636G2161 Trochodendron aralioides HOM05D004237 ORTHO05D005002 1.1e-102 377.9 463 63.3
COL.COLO4_20213 Corchorus olitorius HOM05D004237 ORTHO05D005002 8.8e-100 368.2 441 48.1
Aqoxy2G03968 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 1.7e-98 364.0 468 55.1
ECA238G4613 Erigeron canadensis HOM05D004237 ORTHO05D005002 3.7e-98 362.8 430 53.7
Glyma.05G153300 Glycine max HOM05D004237 ORTHO05D005002 6.3e-98 362.1 456 60.3
HanXRQChr15g0484241 Helianthus annuus HOM05D004237 ORTHO05D005002 4.2e-94 349.4 451 51.4
Eucgr.H02692 Eucalyptus grandis HOM05D004237 ORTHO05D005002 2.7e-93 346.7 457 55.4
Sed0001983 Sechium edule HOM05D004237 ORTHO05D005002 5.2e-92 342.4 432 57.9
Lsat_1_v5_gn_2_45661 Lactuca sativa HOM05D004237 ORTHO05D005002 1.2e-91 341.3 454 57.5
ATR0561G250 Amborella trichopoda HOM05D004237 ORTHO05D005002 1.4e-89 334.3 462 59.5
Glyma.08G110600 Glycine max HOM05D004237 ORTHO05D005002 2.7e-88 330.1 391 58.8
Psat7g073000 Pisum sativum HOM05D004237 ORTHO05D005002 1.7e-82 310.8 451 43.5
Migut.N00416 Erythranthe guttata HOM05D004237 ORTHO05D005002 1.1e-81 308.1 429 52.9
Nitab4.5_0000697g0020 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.6e-80 304.3 456 55.7
CDE05G0646 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 1.2e-77 294.7 446 44.2
MBI11_g07416_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 1.4e-76 291.2 448 48.7
SGA_v2.0_scaffold31G12582 Striga asiatica HOM05D004237 ORTHO05D005002 5.6e-70 269.2 454 48.0
TPR.G11799 Trifolium pratense HOM05D004237 ORTHO05D005002 9.8e-67 258.5 222 61.7
PSO017G6634 Papaver somniferum HOM05D004237 ORTHO05D005002 2.1e-64 250.8 464 52.8
SEGI_20207 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 6.6e-63 245.7 461 53.4
unitig_45.g31537 Utricularia gibba HOM05D004237 ORTHO05D005002 2.7e-56 223.8 131 79.4
unitig_578.g16513 Utricularia gibba HOM05D004237 ORTHO05D005002 2.7e-56 223.8 131 79.4
SEGI_05374 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 9.6e-46 188.7 477 40.0
HPP92_024243 Vanilla planifolia HOM05D004237 ORTHO05D005002 3.2e-41 173.7 467 35.5
unitig_45.g31538 Utricularia gibba HOM05D004237 ORTHO05D005002 7.8e-40 169.1 233 41.6
unitig_578.g16512 Utricularia gibba HOM05D004237 ORTHO05D005002 7.8e-40 169.1 233 41.6
Mapoly0008s0013 Marchantia polymorpha HOM05D004237 ORTHO05D005002 1.0e-39 168.7 147 55.1
Thecc.10G175300 Theobroma cacao HOM05D004237 ORTHO05D005002 2.5e-38 164.1 271 40.6
Gohir.D05G281200 Gossypium hirsutum HOM05D004237 ORTHO05D005002 3.3e-38 163.7 138 55.8
Gorai.009G294600 Gossypium raimondii HOM05D004237 ORTHO05D005002 3.3e-38 163.7 138 55.8
CSS0027261 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 7.3e-38 162.5 276 39.5
ClCG05G010910 Citrullus lanatus HOM05D004237 ORTHO05D005002 9.6e-38 162.2 154 53.9
Cc07_g08200 Coffea canephora HOM05D004237 ORTHO05D005002 9.6e-38 162.2 438 36.5
Gohir.A05G279600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 9.6e-38 162.2 138 55.1
GSVIVG01030867001 Vitis vinifera HOM05D004237 ORTHO05D005002 1.3e-37 161.8 144 54.2
Prupe.3G158400 Prunus persica HOM05D004237 ORTHO05D005002 1.6e-37 161.4 147 53.1
Sed0014224 Sechium edule HOM05D004237 ORTHO05D005002 1.6e-37 161.4 154 51.9
HanXRQChr09g0262291 Helianthus annuus HOM05D004237 ORTHO05D005002 2.1e-37 161.0 143 52.4
CANSAT54G2538 Cannabis sativa HOM05D004237 ORTHO05D005002 3.6e-37 160.2 145 53.8
FAN06G1641 Fragaria x ananassa HOM05D004237 ORTHO05D005002 3.6e-37 160.2 147 53.1
Nn3g18884 Nelumbo nucifera HOM05D004237 ORTHO05D005002 3.6e-37 160.2 277 39.0
Oeu047420.1 Olea europaea HOM05D004237 ORTHO05D005002 3.6e-37 160.2 159 50.3
SalBow3G4435 Salvia bowleyana HOM05D004237 ORTHO05D005002 3.6e-37 160.2 162 51.2
CAN.G625.84 Capsicum annuum HOM05D004237 ORTHO05D005002 4.8e-37 159.8 145 52.4
AUR62023243 Chenopodium quinoa HOM05D004237 ORTHO05D005002 4.8e-37 159.8 275 38.2
Duzib106G0201 Durio zibethinus HOM05D004237 ORTHO05D005002 4.8e-37 159.8 274 39.1
EL10Ac2g04487 Beta vulgaris HOM05D004237 ORTHO05D005002 6.2e-37 159.5 273 38.8
Sc11g0008610 Simmondsia chinensis HOM05D004237 ORTHO05D005002 6.2e-37 159.5 164 48.8
Hma1.2p1_3512F.1_g336510 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 8.1e-37 159.1 231 43.3
RcHm_v2.0_Chr7g0221661 Rosa chinensis HOM05D004237 ORTHO05D005002 8.1e-37 159.1 147 53.1
Actinidia17655 Actinidia chinensis HOM05D004237 ORTHO05D005002 1.4e-36 158.3 127 57.5
FvH4_7g06071 Fragaria vesca HOM05D004237 ORTHO05D005002 1.4e-36 158.3 147 52.4
Manes.03G011500 Manihot esculenta HOM05D004237 ORTHO05D005002 1.8e-36 157.9 120 57.5
Hund16204 Selenicereus undatus HOM05D004237 ORTHO05D005002 2.4e-36 157.5 166 50.0
Solyc02g091090.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 2.4e-36 157.5 167 48.5
Sopen02g035740 Solanum pennellii HOM05D004237 ORTHO05D005002 2.4e-36 157.5 167 48.5
Atru.chr4.1671 Acer truncatum HOM05D004237 ORTHO05D005002 3.1e-36 157.1 142 52.8
Rhsim08G0085800 Rhododendron simsii HOM05D004237 ORTHO05D005002 3.1e-36 157.1 165 48.5
Aqoxy5G01640 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 4.0e-36 156.8 272 43.0
MD09G1261100 Malus domestica HOM05D004237 ORTHO05D005002 4.0e-36 156.8 147 51.7
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 4.0e-36 156.8 151 51.7
Cfa007846 Carpinus fangiana HOM05D004237 ORTHO05D005002 5.3e-36 156.4 145 51.7
CsaV3_3G021670 Cucumis sativus L. HOM05D004237 ORTHO05D005002 5.3e-36 156.4 154 51.9
Eucgr.F02819 Eucalyptus grandis HOM05D004237 ORTHO05D005002 5.3e-36 156.4 147 53.7
TPR.G3499 Trifolium pratense HOM05D004237 ORTHO05D005002 5.3e-36 156.4 121 57.9
Dinv14873 Davidia involucrata HOM05D004237 ORTHO05D005002 6.9e-36 156.0 189 47.6
Lalb_Chr10g0104521 Lupinus albus HOM05D004237 ORTHO05D005002 6.9e-36 156.0 142 50.7
SGA_v2.0_scaffold149G36490 Striga asiatica HOM05D004237 ORTHO05D005002 6.9e-36 156.0 137 52.6
CiPaw.03G068200 Carya illinoinensis HOM05D004237 ORTHO05D005002 9.0e-36 155.6 145 51.7
DCAR_025876 Daucus carota HOM05D004237 ORTHO05D005002 9.0e-36 155.6 125 57.6
ECA232G1788 Erigeron canadensis HOM05D004237 ORTHO05D005002 9.0e-36 155.6 158 51.9
Phvul.008G233700 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 9.0e-36 155.6 121 57.0
Sabra04G0058600 Salix brachista HOM05D004237 ORTHO05D005002 9.0e-36 155.6 272 38.6
Cpa.g.sc118.40 Carica papaya HOM05D004237 ORTHO05D005002 1.2e-35 155.2 176 46.6
Glyma.02G247200 Glycine max HOM05D004237 ORTHO05D005002 1.2e-35 155.2 121 56.2
Potri.004G088000 Populus trichocarpa HOM05D004237 ORTHO05D005002 1.5e-35 154.8 189 46.6
MELO3C020294.2 Cucumis melo HOM05D004237 ORTHO05D005002 2.0e-35 154.5 154 51.3
arahy.Tifrunner.gnm1.ann1.68W1N1 Arachis hypogaea HOM05D004237 ORTHO05D005002 2.6e-35 154.1 148 52.0
arahy.Tifrunner.gnm1.ann1.MQJ11K Arachis hypogaea HOM05D004237 ORTHO05D005002 2.6e-35 154.1 148 52.0
TAR633G2403 Trochodendron aralioides HOM05D004237 ORTHO05D005002 3.4e-35 153.7 190 45.3
QL11p004173 Quercus lobata HOM05D004237 ORTHO05D005002 4.5e-35 153.3 149 50.3
CDE09G1075 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 5.8e-35 152.9 118 59.3
ATR0743G026 Amborella trichopoda HOM05D004237 ORTHO05D005002 7.6e-35 152.5 145 51.0
Lsat_1_v5_gn_4_154701 Lactuca sativa HOM05D004237 ORTHO05D005002 7.6e-35 152.5 164 49.4
Ca_05866_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 9.9e-35 152.1 120 55.8
Ca_29976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 9.9e-35 152.1 120 55.8
PGR004G2154 Punica granatum HOM05D004237 ORTHO05D005002 2.2e-34 151.0 274 41.6
CDE02G0048 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 2.9e-34 150.6 120 59.2
MBI08_g18909_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 2.9e-34 150.6 144 50.0
LjContig00141g0018818 Lotus japonicus HOM05D004237 ORTHO05D005002 3.8e-34 150.2 139 52.5
SHI19441 Sapria himalayana HOM05D004237 ORTHO05D005002 3.8e-34 150.2 175 45.1
Migut.H00265 Erythranthe guttata HOM05D004237 ORTHO05D005002 4.9e-34 149.8 152 50.0
Medtr5g079680 Medicago truncatula HOM05D004237 ORTHO05D005002 8.4e-34 149.1 120 55.8
Nitab4.5_0002248g0060 Nicotiana tabacum HOM05D004237 ORTHO05D005002 8.4e-34 149.1 186 44.6
SHI01026 Sapria himalayana HOM05D004237 ORTHO05D005002 4.2e-33 146.7 382 48.7
Psat2g041040 Pisum sativum HOM05D004237 ORTHO05D005002 7.1e-33 146.0 121 52.9
Haze_14220 Corylus avellana HOM05D004237 ORTHO05D005002 3.5e-32 143.7 137 51.1
Lj6P390T29 Lonicera japonica HOM05D004237 ORTHO05D005002 2.3e-31 141.0 138 55.8
CBR_g29388 Chara braunii HOM05D004237 ORTHO05D005002 6.7e-31 139.4 157 45.2
TPR.G11942 Trifolium pratense HOM05D004237 ORTHO05D005002 8.7e-31 139.0 78 83.3
RcHm_v2.0_Chr1g0334211 Rosa chinensis HOM05D004237 ORTHO05D005002 2.7e-08 64.3 53 58.5
Nitab4.5_0004399g0090 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.1e-06 58.9 50 56.0
AUR62023195 Chenopodium quinoa HOM05D004237 ORTHO05D005002 1.5e-06 58.5 79 46.8
Peaxi162Scf00003g00001 Petunia axillaris HOM05D004237 ORTHO05D005002 3.3e-06 57.4 86 43.0
RcHm_v2.0_Chr1g0333501 Rosa chinensis HOM05D004237 ORTHO05D005002 5.7e-06 56.6 77 42.9


User provided reference genes

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