Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 0.0e+00 1354.3 698 100.0
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 0.0e+00 1351.7 698 99.7
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 7.1e-290 1000.3 700 74.4
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 3.5e-281 971.5 700 74.7
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 2.5e-255 885.6 710 67.7
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 6.1e-241 837.8 703 66.4
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 5.2e-224 781.6 704 61.2
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 1.3e-222 776.9 729 62.3
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 4.7e-209 731.9 706 56.4
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 4.1e-205 718.8 707 56.9
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 4.7e-201 705.3 704 54.8
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 2.8e-193 679.5 704 52.4
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 5.8e-191 671.8 722 52.6
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 2.1e-188 663.3 680 54.7
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 5.6e-186 655.2 709 51.2
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 2.8e-185 652.9 698 52.1
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 8.1e-185 651.4 713 50.8
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 1.5e-183 647.1 702 51.3
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 4.1e-181 639.0 714 51.1
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 5.4e-181 638.6 710 51.3
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 3.0e-179 632.9 715 50.1
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 3.3e-178 629.4 707 50.8
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 2.1e-177 626.7 706 50.8
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 4.4e-175 619.0 707 50.1
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 1.4e-173 614.0 716 49.6
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.0e-171 607.8 716 49.9
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.3e-171 607.4 715 49.0
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 1.3e-171 607.4 715 49.0
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.1e-170 604.4 720 48.6
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 1.6e-169 600.5 733 48.6
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 6.2e-169 598.6 720 47.2
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 1.3e-166 590.9 701 48.5
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 6.4e-166 588.6 698 49.0
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 6.4e-166 588.6 714 48.0
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 1.9e-165 587.0 722 47.0
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 4.2e-165 585.9 701 48.1
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 5.1e-163 578.9 686 50.0
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 1.5e-162 577.4 720 47.5
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 8.1e-161 571.6 699 47.6
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 1.4e-160 570.9 704 48.9
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 1.4e-160 570.9 729 48.1
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 4.0e-160 569.3 781 46.0
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 1.1e-157 561.2 709 47.7
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 7.1e-157 558.5 705 47.9
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 1.8e-155 553.9 695 46.3
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.8e-155 553.9 715 47.6
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.9e-154 550.4 711 46.4
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 5.3e-152 542.3 713 46.4
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.0e-150 538.1 734 46.5
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 1.3e-150 537.7 700 47.3
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 1.3e-150 537.7 700 45.4
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 1.3e-150 537.7 707 45.5
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 3.2e-149 533.1 740 44.3
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.1e-148 530.4 735 45.6
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 2.7e-148 530.0 703 45.8
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 2.7e-148 530.0 717 44.5
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 2.3e-147 526.9 705 44.0
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 3.9e-147 526.2 636 47.5
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 9.6e-146 521.5 714 44.4
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 1.3e-145 521.2 712 44.9
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 1.3e-145 521.2 698 45.6
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 2.1e-145 520.4 699 45.2
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 4.1e-144 516.2 701 44.9
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 4.5e-143 512.7 547 51.9
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 2.9e-142 510.0 639 47.6
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 4.2e-141 506.1 706 44.3
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 1.6e-140 504.2 703 45.0
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 4.6e-140 502.7 698 44.4
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 2.3e-139 500.4 721 43.4
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 2.3e-139 500.4 581 49.9
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 3.4e-135 486.5 714 42.3
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 1.7e-134 484.2 704 47.6
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 8.5e-134 481.9 718 42.8
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 8.5e-134 481.9 718 42.8
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 1.1e-133 481.5 730 42.5
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 1.9e-133 480.7 713 42.4
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 1.6e-132 477.6 722 42.2
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 4.6e-132 476.1 716 42.3
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 5.1e-131 472.6 718 42.5
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 1.7e-129 467.6 685 44.1
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 2.2e-129 467.2 722 41.7
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 3.7e-129 466.5 696 43.2
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 9.1e-128 461.8 701 43.4
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.5e-127 461.1 677 41.9
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 1.0e-126 458.4 660 44.8
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 1.9e-125 454.1 714 39.9
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 4.2e-125 453.0 477 53.5
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 4.2e-125 453.0 653 42.0
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 1.2e-124 451.4 710 40.0
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 1.4e-123 448.0 708 40.5
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 2.0e-119 434.1 605 43.3
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 2.3e-115 420.6 574 46.2
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 6.7e-115 419.1 710 39.7
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 3.7e-113 413.3 717 39.3
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 8.5e-110 402.1 661 41.8
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 3.7e-105 386.7 505 45.9
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 1.8e-104 384.4 600 40.5
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 4.1e-104 383.3 482 49.4
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 1.5e-98 364.8 747 36.7
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 1.3e-97 361.7 475 45.9
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 3.1e-96 357.1 371 50.9
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 4.1e-96 356.7 516 42.8
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 5.9e-95 352.8 694 36.7
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 2.5e-93 347.4 676 35.4
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 3.6e-92 343.6 669 35.6
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 2.2e-89 334.3 460 43.0
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 3.7e-89 333.6 513 42.3
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 5.9e-87 326.2 621 35.6
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.0e-86 325.5 412 47.6
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 8.6e-86 322.4 770 33.4
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 1.6e-84 318.2 635 36.1
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 6.2e-84 316.2 513 39.0
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 2.3e-83 314.3 668 34.7
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 8.9e-83 312.4 562 38.4
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 1.3e-81 308.5 483 41.2
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 4.9e-81 306.6 676 33.4
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 4.9e-81 306.6 676 33.4
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 1.9e-72 278.1 518 36.9
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 8.6e-70 269.2 320 46.9
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 4.7e-68 263.5 618 34.1
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 7.8e-63 246.1 483 36.2
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 6.4e-57 226.5 440 36.6
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 1.1e-48 199.1 251 48.6
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 6.0e-47 193.4 382 34.0
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 3.9e-46 190.7 215 47.9
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.1e-45 189.1 407 34.4
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 1.5e-45 188.7 375 35.5
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 1.3e-41 175.6 200 44.0
Oeu053007.1 Olea europaea HOM05D004086 ORTHO05D004641 2.9e-41 174.5 335 39.4
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 1.4e-40 172.2 330 38.2
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 6.0e-39 166.8 221 44.8
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.1e-37 162.5 238 42.4
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 7.4e-37 159.8 358 35.5
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 8.1e-36 156.4 331 35.3
Lj4A239T53 Lonicera japonica HOM05D004086 ORTHO05D004641 6.9e-35 153.3 130 60.0
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 2.2e-33 148.3 193 46.6
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 2.2e-33 148.3 437 33.9
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 2.5e-32 144.8 239 38.9
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 2.5e-32 144.8 267 40.8
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 3.2e-32 144.4 231 43.7
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.2e-31 142.5 178 41.6
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 3.3e-29 134.4 275 37.5
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 1.2e-26 125.9 331 32.6
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 8.5e-25 119.8 156 41.7
MCO01G289 Micromonas commoda HOM05D004086 ORTHO05D004641 2.5e-21 108.2 632 24.2
SHI06750 Sapria himalayana HOM05D004086 ORTHO05D004641 1.3e-20 105.9 140 42.9
Oeu014919.1 Olea europaea HOM05D004086 ORTHO05D004641 1.1e-19 102.8 645 25.7
Glyma.01G232951 Glycine max HOM05D001514 ORTHO05D002956 2.9e-17 94.7 227 33.5
Ca_29956_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 6.5e-17 93.6 100 51.0
BcaB07g34160 Brassica carinata HOM05D004086 ORTHO05D004641 1.1e-16 92.8 129 43.4
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 7.2e-16 90.1 82 51.2
Sc17g0002700 Simmondsia chinensis HOM05D004086 ORTHO05D004641 3.0e-14 84.7 103 42.7
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 2.6e-13 81.6 158 38.0
SHI06749 Sapria himalayana HOM05D004086 ORTHO05D004641 4.4e-13 80.9 87 48.3
SEGI_38277 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 5.7e-13 80.5 148 37.8
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 7.4e-13 80.1 106 44.3
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 7.4e-13 80.1 52 69.2
HPP92_026150 Vanilla planifolia HOM05D004086 ORTHO05D004641 7.4e-13 80.1 101 47.5
Cre10.g454650 Chlamydomonas reinhardtii HOM05D004086 ORTHO05D004641 2.4e-11 75.1 149 35.6
SEGI_29880 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 2.6e-10 71.6 80 46.2
QL06p009809 Quercus lobata HOM05D004086 ORTHO05D004641 4.5e-10 70.9 81 48.1
Zm00001eb176250 Zea mays HOM05D004086 ORTHO05D004641 6.5e-09 67.0 190 32.1
MBI08_g04811_MAGBIO Magnolia biondii HOM05D018116 ORTHO05D025787 5.2e-06 57.4 154 32.5
SEGI_37045 Sequoiadendron giganteum HOM05D037714 ORTHO05D004641 5.2e-06 57.4 139 29.5
MELO3C034917.2 Cucumis melo HOM05D004086 ORTHO05D004641 8.8e-06 56.6 31 71.0


User provided reference genes

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