Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002588 Camellia sinensis var. sinensis HOM05D003176 ORTHO05D018830 2.4e-34 148.3 75 100.0
CSS0022445 Camellia sinensis var. sinensis HOM05D003176 ORTHO05D018830 2.4e-34 148.3 75 100.0
Actinidia01281 Actinidia chinensis HOM05D003176 ORTHO05D004011 5.3e-18 94.0 74 71.6
Dinv25436 Davidia involucrata HOM05D003176 ORTHO05D004011 9.1e-18 93.2 70 74.3
CSS0006331 Camellia sinensis var. sinensis HOM05D003176 ORTHO05D004011 1.6e-17 92.4 74 73.0
Dinv41170 Davidia involucrata HOM05D003176 ORTHO05D004011 5.9e-17 90.5 70 74.3
Actinidia02504 Actinidia chinensis HOM05D003176 ORTHO05D004011 1.7e-16 89.0 74 68.9
Prupe.1G076400 Prunus persica HOM05D003176 ORTHO05D004011 2.2e-16 88.6 72 70.8
MD13G1242400 Malus domestica HOM05D003176 ORTHO05D004011 1.6e-14 82.4 70 71.4
HanXRQChr10g0308831 Helianthus annuus HOM05D003176 ORTHO05D004011 2.1e-14 82.0 75 68.0
vmacro20819 Vaccinium macrocarpon HOM05D003176 ORTHO05D004011 6.1e-14 80.5 79 63.3
Glyma.17G059700 Glycine max HOM05D003176 ORTHO05D004011 1.8e-13 79.0 70 62.9
CAN.G333.10 Capsicum annuum HOM05D003176 ORTHO05D004011 8.8e-13 76.6 58 62.1
FAN17G1758 Fragaria x ananassa HOM05D003176 ORTHO05D004011 8.8e-13 76.6 72 61.1
SGA_v2.0_scaffold231G43412 Striga asiatica HOM05D003176 ORTHO05D004011 1.2e-12 76.3 45 77.8
Haze_22014 Corylus avellana HOM05D003176 ORTHO05D004011 1.5e-12 75.9 70 61.4
Cpa.g.c27842.3 Carica papaya HOM05D003176 ORTHO05D004011 2.0e-12 75.5 50 74.0
Cfa013447 Carpinus fangiana HOM05D003176 ORTHO05D004011 3.4e-12 74.7 70 60.0
Lj6g0011356 Lotus japonicus HOM05D003176 ORTHO05D004011 3.4e-12 74.7 68 57.4
CiPaw.07G196500 Carya illinoinensis HOM05D003176 ORTHO05D004011 7.5e-12 73.6 68 61.8
ClCG11G011790 Citrullus lanatus HOM05D003176 ORTHO05D004011 7.5e-12 73.6 67 58.2
Manes.14G157900 Manihot esculenta HOM05D003176 ORTHO05D004011 7.5e-12 73.6 48 70.8
Glyma.09G059200 Glycine max HOM05D003176 ORTHO05D004011 9.7e-12 73.2 66 54.5
arahy.Tifrunner.gnm1.ann1.LRN56Y Arachis hypogaea HOM05D003176 ORTHO05D004011 1.3e-11 72.8 45 71.1
Phvul.003G141700 Phaseolus vulgaris HOM05D003176 ORTHO05D004011 1.3e-11 72.8 70 58.6
Rhsim01G0118100 Rhododendron simsii HOM05D003176 ORTHO05D004011 1.3e-11 72.8 79 55.7
arahy.Tifrunner.gnm1.ann1.LHRZ75 Arachis hypogaea HOM05D003176 ORTHO05D004011 1.7e-11 72.4 45 71.1
MELO3C003977.2 Cucumis melo HOM05D003176 ORTHO05D004011 1.7e-11 72.4 67 55.2
CsaV3_2G008700 Cucumis sativus L. HOM05D003176 ORTHO05D004011 2.2e-11 72.0 67 55.2
Eucgr.C00121 Eucalyptus grandis HOM05D003176 ORTHO05D004011 2.8e-11 71.6 46 67.4
HanXRQChr12g0358501 Helianthus annuus HOM05D003176 ORTHO05D004011 2.8e-11 71.6 77 62.3
MD16G1249600 Malus domestica HOM05D003176 ORTHO05D004011 2.8e-11 71.6 74 60.8
Glyma.15G165500 Glycine max HOM05D003176 ORTHO05D004011 4.8e-11 70.9 74 54.1
Lj5A672T28 Lonicera japonica HOM05D003176 ORTHO05D004011 4.8e-11 70.9 74 54.1
QL02p046513 Quercus lobata HOM05D003176 ORTHO05D004011 6.3e-11 70.5 70 60.0
Sed0012562 Sechium edule HOM05D003176 ORTHO05D004011 6.3e-11 70.5 73 56.2
SGA_v2.0_scaffold491G52431 Striga asiatica HOM05D003176 ORTHO05D004011 6.3e-11 70.5 45 75.6
RcHm_v2.0_Chr4g0399721 Rosa chinensis HOM05D003176 ORTHO05D004011 8.3e-11 70.1 72 59.7
MSTRG.26541 Avicennia marina HOM05D003176 ORTHO05D004011 1.1e-10 69.7 45 73.3
Migut.J00803 Erythranthe guttata HOM05D003176 ORTHO05D004011 1.1e-10 69.7 51 66.7
Ca_21252_v3 Cicer arietinum L. HOM05D003176 ORTHO05D004011 1.4e-10 69.3 70 51.4
MBI13_g01740_MAGBIO Magnolia biondii HOM05D003176 ORTHO05D004011 1.4e-10 69.3 74 55.4
Nitab4.5_0003468g0010 Nicotiana tabacum HOM05D003176 ORTHO05D004011 1.4e-10 69.3 41 75.6
Solyc07g008840.3 Solanum lycopersicum HOM05D003176 ORTHO05D004011 1.4e-10 69.3 41 78.0
Sopen07g004770 Solanum pennellii HOM05D003176 ORTHO05D004011 1.4e-10 69.3 41 78.0
arahy.Tifrunner.gnm1.ann1.DF4URC Arachis hypogaea HOM05D003176 ORTHO05D004011 1.8e-10 68.9 74 56.8
Cc00_g10750 Coffea canephora HOM05D003176 ORTHO05D004011 1.8e-10 68.9 45 71.1
SGA_v2.0_scaffold31G12758 Striga asiatica HOM05D003176 ORTHO05D004011 1.8e-10 68.9 40 80.0
Potri.018G143100 Populus trichocarpa HOM05D003176 ORTHO05D004011 2.4e-10 68.6 56 60.7
PGR044G1774 Punica granatum HOM05D003176 ORTHO05D004011 2.4e-10 68.6 72 51.4
arahy.Tifrunner.gnm1.ann1.06L84B Arachis hypogaea HOM05D003176 ORTHO05D004011 3.1e-10 68.2 74 56.8
CANSAT11G0358 Cannabis sativa HOM05D003176 ORTHO05D004011 3.1e-10 68.2 69 59.4
Sabra06G0056800 Salix brachista HOM05D003176 ORTHO05D004011 3.1e-10 68.2 49 69.4
VMungo1215G3277 Vigna mungo HOM05D003176 ORTHO05D004011 3.1e-10 68.2 74 52.7
PGSC0003DMG400028746 Solanum tuberosum HOM05D003176 ORTHO05D004011 4.1e-10 67.8 50 72.0
Duzib150G0644 Durio zibethinus HOM05D003176 ORTHO05D004011 5.3e-10 67.4 44 77.3
Sabra18G0116900 Salix brachista HOM05D003176 ORTHO05D004011 5.3e-10 67.4 39 82.1
TPR.G7915 Trifolium pratense HOM05D003176 ORTHO05D004011 5.3e-10 67.4 49 63.3
COL.COLO4_08418 Corchorus olitorius HOM05D003176 ORTHO05D004011 7.0e-10 67.0 45 73.3
Lsat_1_v5_gn_7_56381 Lactuca sativa HOM05D003176 ORTHO05D004011 7.0e-10 67.0 78 56.4
Potri.006G076000 Populus trichocarpa HOM05D003176 ORTHO05D004011 7.0e-10 67.0 56 60.7
PGSC0003DMG400023179 Solanum tuberosum HOM05D003176 ORTHO05D004011 7.0e-10 67.0 42 76.2
AUR62021345 Chenopodium quinoa HOM05D003176 ORTHO05D004011 9.1e-10 66.6 45 68.9
Ca_02099_v3 Cicer arietinum L. HOM05D003176 ORTHO05D004011 9.1e-10 66.6 50 66.0
Manes.06G020300 Manihot esculenta HOM05D003176 ORTHO05D004011 9.1e-10 66.6 70 57.1
Medtr4g127450 Medicago truncatula HOM05D003176 ORTHO05D004011 9.1e-10 66.6 71 53.5
Phvul.009G236600 Phaseolus vulgaris HOM05D003176 ORTHO05D004011 9.1e-10 66.6 63 54.0
unitig_22.g5163 Utricularia gibba HOM05D003176 ORTHO05D004011 9.1e-10 66.6 56 58.9
SalBow5G0408 Salvia bowleyana HOM05D003176 ORTHO05D004011 1.2e-09 66.2 40 75.0
THA.LOC104817780 Tarenaya hassleriana HOM05D003176 ORTHO05D004011 1.2e-09 66.2 45 68.9
Carub.0008s1772 Capsella rubella HOM05D003176 ORTHO05D004011 1.6e-09 65.9 45 66.7
Medtr2g037930 Medicago truncatula HOM05D003176 ORTHO05D004011 2.0e-09 65.5 70 50.0
Sed0013378 Sechium edule HOM05D003176 ORTHO05D004011 2.0e-09 65.5 72 52.8
VMungo1309G1566 Vigna mungo HOM05D003176 ORTHO05D004011 2.0e-09 65.5 45 64.4
Nitab4.5_0000617g0010 Nicotiana tabacum HOM05D003176 ORTHO05D004011 2.7e-09 65.1 37 78.4
Solyc02g014450.3 Solanum lycopersicum HOM05D003176 ORTHO05D004011 2.7e-09 65.1 42 73.8
GSVIVG01010868001 Vitis vinifera HOM05D003176 ORTHO05D004011 2.7e-09 65.1 70 57.1
CiPaw.08G033000 Carya illinoinensis HOM05D003176 ORTHO05D004011 3.5e-09 64.7 74 51.4
Duzib170G0992 Durio zibethinus HOM05D003176 ORTHO05D004011 3.5e-09 64.7 44 72.7
Psat1g145440 Pisum sativum HOM05D003176 ORTHO05D004011 3.5e-09 64.7 45 64.4
Sp3g32610 Schrenkiella parvula HOM05D003176 ORTHO05D004011 3.5e-09 64.7 72 48.6
Sopen02g003110 Solanum pennellii HOM05D003176 ORTHO05D004011 3.5e-09 64.7 42 73.8
Lalb_Chr11g0074831 Lupinus albus HOM05D003176 ORTHO05D004011 4.5e-09 64.3 44 68.2
PGR142G3732 Punica granatum HOM05D003176 ORTHO05D004011 4.5e-09 64.3 51 62.7
Ah.14g083560 Amaranthus hybridus HOM05D003176 ORTHO05D004011 5.9e-09 63.9 74 51.4
AL161U10040 Arabidopsis lyrata HOM05D003176 ORTHO05D004011 5.9e-09 63.9 45 64.4
AL8G33180 Arabidopsis lyrata HOM05D003176 ORTHO05D004011 5.9e-09 63.9 45 64.4
AT5G57210 Arabidopsis thaliana HOM05D003176 ORTHO05D004011 5.9e-09 63.9 47 61.7
CARHR271000 Cardamine hirsuta HOM05D003176 ORTHO05D004011 5.9e-09 63.9 45 64.4
Nn8g40842 Nelumbo nucifera HOM05D003176 ORTHO05D004011 5.9e-09 63.9 70 57.1
TWI32G0804 Tripterygium wilfordii HOM05D003176 ORTHO05D004011 5.9e-09 63.9 75 56.0
A10p14610 Brassica napus HOM05D003176 ORTHO05D004011 7.7e-09 63.5 56 55.4
BraA10t43547Z Brassica rapa HOM05D003176 ORTHO05D004011 7.7e-09 63.5 56 55.4
Duzib168G1099 Durio zibethinus HOM05D003176 ORTHO05D004011 7.7e-09 63.5 44 72.7
Lalb_Chr23g0276801 Lupinus albus HOM05D003176 ORTHO05D004011 7.7e-09 63.5 43 67.4
Thecc.09G185500 Theobroma cacao HOM05D003176 ORTHO05D004011 7.7e-09 63.5 46 71.7
Aa31LG3G13110 Aethionema arabicum HOM05D003176 ORTHO05D004011 1.3e-08 62.8 45 64.4
Oeu044676.1 Olea europaea HOM05D003176 ORTHO05D004011 1.3e-08 62.8 66 63.6
Oeu044677.1 Olea europaea HOM05D003176 ORTHO05D004011 1.3e-08 62.8 66 63.6
SalBow3G1319 Salvia bowleyana HOM05D003176 ORTHO05D004011 1.3e-08 62.8 50 62.0
Sc08g0004700 Simmondsia chinensis HOM05D003176 ORTHO05D004011 1.3e-08 62.8 40 75.0
THA.LOC104814653 Tarenaya hassleriana HOM05D003176 ORTHO05D004011 1.3e-08 62.8 72 50.0
Atru.chr7.764 Acer truncatum HOM05D003176 ORTHO05D004011 1.7e-08 62.4 44 72.7
Atru.chr7.784 Acer truncatum HOM05D003176 ORTHO05D004011 1.7e-08 62.4 44 72.7
BcaB08g36083 Brassica carinata HOM05D003176 ORTHO05D004011 1.7e-08 62.4 45 64.4
BcaC04g19989 Brassica carinata HOM05D003176 ORTHO05D004011 1.7e-08 62.4 45 64.4
C09p49040 Brassica napus HOM05D003176 ORTHO05D004011 1.7e-08 62.4 45 64.4
BolC9t57755H Brassica oleracea HOM05D003176 ORTHO05D004011 1.7e-08 62.4 45 64.4
AUR62033259 Chenopodium quinoa HOM05D003176 ORTHO05D004011 1.7e-08 62.4 45 68.9
Oeu006849.1 Olea europaea HOM05D003176 ORTHO05D004011 1.7e-08 62.4 68 51.5
Psat4g013240 Pisum sativum HOM05D003176 ORTHO05D004011 1.7e-08 62.4 72 51.4
HPP92_017388 Vanilla planifolia HOM05D003176 ORTHO05D004011 1.7e-08 62.4 71 49.3
Aqoxy7G02785 Aquilegia oxysepala HOM05D003176 ORTHO05D004011 2.2e-08 62.0 47 63.8
Carub.0003s3347 Capsella rubella HOM05D003176 ORTHO05D004011 2.2e-08 62.0 72 47.2
TAR625G0715 Trochodendron aralioides HOM05D003176 ORTHO05D004011 2.2e-08 62.0 72 52.8
HPP92_010793 Vanilla planifolia HOM05D003176 ORTHO05D004011 2.2e-08 62.0 61 52.5
Lalb_Chr08g0231881 Lupinus albus HOM05D003176 ORTHO05D004011 2.9e-08 61.6 42 66.7
Lalb_Chr12g0199591 Lupinus albus HOM05D003176 ORTHO05D004011 2.9e-08 61.6 58 53.4
MBI16_g05838_MAGBIO Magnolia biondii HOM05D003176 ORTHO05D004011 3.8e-08 61.2 39 71.8
Sp6g18940 Schrenkiella parvula HOM05D003176 ORTHO05D004011 3.8e-08 61.2 45 62.2
AT2G19240 Arabidopsis thaliana HOM05D003176 ORTHO05D004011 5.0e-08 60.8 75 48.0
Lalb_Chr07g0180631 Lupinus albus HOM05D003176 ORTHO05D004011 5.0e-08 60.8 66 51.5
PSO063G3607 Papaver somniferum HOM05D003176 ORTHO05D004011 5.0e-08 60.8 48 60.4
PSO170G4191 Papaver somniferum HOM05D003176 ORTHO05D004011 5.0e-08 60.8 48 60.4
Zm00001eb234230 Zea mays HOM05D003176 ORTHO05D018830 6.5e-08 60.5 47 59.6
Thhalv10012758m.g Eutrema salsugineum HOM05D003176 ORTHO05D004011 8.5e-08 60.1 71 50.7
TWI63G0043 Tripterygium wilfordii HOM05D003176 ORTHO05D004011 8.5e-08 60.1 71 52.1
Hund09057 Selenicereus undatus HOM05D003176 ORTHO05D004011 1.1e-07 59.7 39 69.2
CDE05G1120 Ceratophyllum demersum HOM05D003176 ORTHO05D018830 1.5e-07 59.3 62 58.1
DCAR_019802 Daucus carota HOM05D003176 ORTHO05D004011 1.5e-07 59.3 38 78.9
Gohir.A08G080400 Gossypium hirsutum HOM05D003176 ORTHO05D004011 1.5e-07 59.3 48 64.6
Gorai.004G095300 Gossypium raimondii HOM05D003176 ORTHO05D004011 1.5e-07 59.3 48 64.6
Peaxi162Scf01600g00024 Petunia axillaris HOM05D003176 ORTHO05D004011 1.5e-07 59.3 39 74.4
ATR0626G188 Amborella trichopoda HOM05D003176 ORTHO05D004011 1.9e-07 58.9 71 49.3
AL7G22290 Arabidopsis lyrata HOM05D003176 ORTHO05D004011 1.9e-07 58.9 41 63.4
CARHR109700 Cardamine hirsuta HOM05D003176 ORTHO05D004011 1.9e-07 58.9 70 45.7
Os08g0518100 Oryza sativa ssp. japonica HOM05D003176 ORTHO05D004011 1.9e-07 58.9 42 59.5
Peaxi162Scf00124g00614 Petunia axillaris HOM05D003176 ORTHO05D004011 1.9e-07 58.9 37 75.7
Hund26313 Selenicereus undatus HOM05D001165 ORTHO05D018830 1.9e-07 58.9 74 51.4
FvH4_4g07350 Fragaria vesca HOM05D003176 ORTHO05D004011 2.5e-07 58.5 42 69.0
FAN07G0459 Fragaria x ananassa HOM05D003176 ORTHO05D004011 2.5e-07 58.5 42 69.0
FAN12G1948 Fragaria x ananassa HOM05D003176 ORTHO05D004011 2.5e-07 58.5 42 69.0
Gohir.D13G213200 Gossypium hirsutum HOM05D003176 ORTHO05D004011 2.5e-07 58.5 68 54.4
Zm00001eb035750 Zea mays HOM05D003176 ORTHO05D004011 2.5e-07 58.5 40 65.0
Aa31LG2G20600 Aethionema arabicum HOM05D003176 ORTHO05D004011 3.2e-07 58.2 41 61.0
Aa31LG8G16270 Aethionema arabicum HOM05D003176 ORTHO05D004011 3.2e-07 58.2 74 41.9
EL10Ac8g18330 Beta vulgaris HOM05D003176 ORTHO05D004011 3.2e-07 58.2 46 63.0
THA.LOC104820008 Tarenaya hassleriana HOM05D003176 ORTHO05D004011 3.2e-07 58.2 45 57.8
AT4G29950 Arabidopsis thaliana HOM05D003176 ORTHO05D004011 4.2e-07 57.8 41 61.0
CDE02G1474 Ceratophyllum demersum HOM05D003176 ORTHO05D004011 4.2e-07 57.8 38 73.7
ECA240G0293 Erigeron canadensis HOM05D003176 ORTHO05D004011 4.2e-07 57.8 54 57.4
Thhalv10024395m.g Eutrema salsugineum HOM05D003176 ORTHO05D004011 4.2e-07 57.8 41 61.0
VMungo0251G1495 Vigna mungo HOM05D003176 ORTHO05D018830 4.2e-07 57.8 66 50.0
Ciclev10007458m.g Citrus clementina HOM05D003176 ORTHO05D004011 5.5e-07 57.4 37 78.4
Oeu064554.1 Olea europaea HOM05D003176 ORTHO05D004011 5.5e-07 57.4 44 63.6
Migut.L01886 Erythranthe guttata HOM05D003176 ORTHO05D004011 7.2e-07 57.0 51 54.9
FAN22G0108 Fragaria x ananassa HOM05D003176 ORTHO05D004011 7.2e-07 57.0 39 71.8
Gohir.D08G090300 Gossypium hirsutum HOM05D003176 ORTHO05D004011 7.2e-07 57.0 48 62.5
Lj4g0019846 Lotus japonicus HOM05D003176 ORTHO05D004011 7.2e-07 57.0 51 52.9
Carub.0007s1069 Capsella rubella HOM05D003176 ORTHO05D004011 9.4e-07 56.6 41 61.0
Gorai.013G243500 Gossypium raimondii HOM05D003176 ORTHO05D004011 9.4e-07 56.6 68 52.9
HanXRQChr03g0068441 Helianthus annuus HOM05D003176 ORTHO05D004011 1.2e-06 56.2 61 54.1
TPR.G35076 Trifolium pratense HOM05D003176 ORTHO05D004011 1.2e-06 56.2 71 45.1
C01p09120 Brassica napus HOM05D003176 ORTHO05D004011 1.6e-06 55.8 41 58.5
BolC1t00903H Brassica oleracea HOM05D003176 ORTHO05D004011 1.6e-06 55.8 41 58.5
BraA01t00762Z Brassica rapa HOM05D003176 ORTHO05D004011 1.6e-06 55.8 41 58.5
ECA234G0289 Erigeron canadensis HOM05D003176 ORTHO05D004011 1.6e-06 55.8 58 55.2
Sp7g27760 Schrenkiella parvula HOM05D003176 ORTHO05D004011 1.6e-06 55.8 41 61.0
CDE06G0860 Ceratophyllum demersum HOM05D003176 ORTHO05D004011 2.1e-06 55.5 38 71.1
HPP92_017123 Vanilla planifolia HOM05D003176 ORTHO05D004011 4.7e-06 54.3 67 47.8
CARHR237870 Cardamine hirsuta HOM05D003176 ORTHO05D004011 6.1e-06 53.9 41 56.1


User provided reference genes

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