Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022443 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 3.2e-36 154.8 94 100.0
Actinidia11364 Actinidia chinensis HOM05D005475 ORTHO05D006575 1.3e-24 116.3 75 76.0
Actinidia39922 Actinidia chinensis HOM05D005475 ORTHO05D006575 1.8e-23 112.5 75 73.3
CSS0013344 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 3.8e-21 104.8 87 70.1
Rhsim02G0042800 Rhododendron simsii HOM05D005475 ORTHO05D006575 9.3e-20 100.1 91 61.5
Dinv27096 Davidia involucrata HOM05D005475 ORTHO05D006575 2.7e-19 98.6 84 63.1
Actinidia20831 Actinidia chinensis HOM05D005475 ORTHO05D006575 6.7e-18 94.0 81 61.7
vmacro08540 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 6.7e-18 94.0 94 59.6
Hma1.2p1_0385F.1_g141450 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 2.5e-17 92.0 80 62.5
vmacro15470 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 7.4e-17 90.5 91 58.2
Rhsim04G0173600 Rhododendron simsii HOM05D005475 ORTHO05D006575 2.8e-16 88.6 68 73.5
TWI73G1305 Tripterygium wilfordii HOM05D005475 ORTHO05D006575 8.2e-16 87.0 72 59.7
Cc03_g06010 Coffea canephora HOM05D005475 ORTHO05D006575 6.9e-15 84.0 79 60.8
CiPaw.02G108100 Carya illinoinensis HOM05D005475 ORTHO05D006575 1.2e-14 83.2 80 61.2
TAR362G0816 Trochodendron aralioides HOM05D005475 ORTHO05D006575 1.5e-14 82.8 80 58.8
GSVIVG01027899001 Vitis vinifera HOM05D005475 ORTHO05D006575 2.6e-14 82.0 68 61.8
CAN.G220.90 Capsicum annuum HOM05D005475 ORTHO05D006575 3.4e-14 81.6 64 67.2
Hma1.2p1_0112F.1_g054570 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 5.9e-14 80.9 64 65.6
Nn3g19747 Nelumbo nucifera HOM05D005475 ORTHO05D006575 5.9e-14 80.9 80 55.0
Prupe.1G046100 Prunus persica HOM05D005475 ORTHO05D006575 5.9e-14 80.9 76 53.9
ClCG05G004080 Citrullus lanatus HOM05D005475 ORTHO05D006575 1.0e-13 80.1 77 53.2
Solyc09g090540.3 Solanum lycopersicum HOM05D005475 ORTHO05D006575 1.7e-13 79.3 55 69.1
Sopen09g033470 Solanum pennellii HOM05D005475 ORTHO05D006575 1.7e-13 79.3 55 69.1
PGSC0003DMG400017155 Solanum tuberosum HOM05D005475 ORTHO05D006575 1.7e-13 79.3 55 69.1
MD13G1219400 Malus domestica HOM05D005475 ORTHO05D006575 2.2e-13 79.0 61 63.9
Psat6g107160 Pisum sativum HOM05D005475 ORTHO05D006575 2.9e-13 78.6 78 53.8
CiPaw.01G179400 Carya illinoinensis HOM05D005475 ORTHO05D006575 3.8e-13 78.2 80 56.2
MD16G1224800 Malus domestica HOM05D005475 ORTHO05D006575 5.0e-13 77.8 61 62.3
Sed0012950 Sechium edule HOM05D005475 ORTHO05D006575 5.0e-13 77.8 77 53.2
Thecc.04G261900 Theobroma cacao HOM05D005475 ORTHO05D006575 5.0e-13 77.8 72 55.6
Eucgr.H02964 Eucalyptus grandis HOM05D005475 ORTHO05D006575 6.5e-13 77.4 67 58.2
Sed0016324 Sechium edule HOM05D005475 ORTHO05D006575 6.5e-13 77.4 77 53.2
TAR365G0748 Trochodendron aralioides HOM05D005475 ORTHO05D006575 6.5e-13 77.4 68 58.8
Medtr1g045370 Medicago truncatula HOM05D005475 ORTHO05D006575 1.9e-12 75.9 78 55.1
Phvul.007G271300 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 1.9e-12 75.9 86 55.8
Cfa014769 Carpinus fangiana HOM05D005475 ORTHO05D006575 2.5e-12 75.5 83 54.2
Glyma.10G136600 Glycine max HOM05D005475 ORTHO05D006575 2.5e-12 75.5 99 48.5
CANSAT78G0624 Cannabis sativa HOM05D005475 ORTHO05D006575 4.2e-12 74.7 72 56.9
Manes.15G044300 Manihot esculenta HOM05D005475 ORTHO05D006575 4.2e-12 74.7 77 54.5
Ca_11926_v3 Cicer arietinum L. HOM05D005475 ORTHO05D006575 7.2e-12 73.9 62 59.7
Gohir.D10G159400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 7.2e-12 73.9 75 52.0
Gorai.011G179000 Gossypium raimondii HOM05D005475 ORTHO05D006575 7.2e-12 73.9 75 52.0
Nitab4.5_0001051g0090 Nicotiana tabacum HOM05D005475 ORTHO05D006575 9.4e-12 73.6 71 59.2
Ciclev10006301m.g Citrus clementina HOM05D005475 ORTHO05D006575 1.2e-11 73.2 78 52.6
Lalb_Chr19g0128471 Lupinus albus HOM05D005475 ORTHO05D006575 1.2e-11 73.2 104 48.1
Potri.010G067200 Populus trichocarpa HOM05D005475 ORTHO05D006575 1.2e-11 73.2 84 52.4
QL06p020702 Quercus lobata HOM05D005475 ORTHO05D006575 2.1e-11 72.4 75 58.7
COL.COLO4_15946 Corchorus olitorius HOM05D005475 ORTHO05D006575 2.7e-11 72.0 72 50.0
Gohir.A10G108400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 2.7e-11 72.0 75 50.7
Peaxi162Scf00033g02837 Petunia axillaris HOM05D005475 ORTHO05D006575 2.7e-11 72.0 50 70.0
Nitab4.5_0002709g0070 Nicotiana tabacum HOM05D005475 ORTHO05D006575 3.6e-11 71.6 71 57.7
Duzib212G0290 Durio zibethinus HOM05D005475 ORTHO05D006575 4.6e-11 71.2 76 55.3
Glyma.20G201100 Glycine max HOM05D005475 ORTHO05D006575 7.9e-11 70.5 82 48.8
VMungo0720G1758 Vigna mungo HOM05D005475 ORTHO05D006575 7.9e-11 70.5 82 50.0
MELO3C006388.2 Cucumis melo HOM05D000730 ORTHO05D000578 1.0e-10 70.1 76 47.4
Duzib151G0481 Durio zibethinus HOM05D005475 ORTHO05D006575 1.0e-10 70.1 64 54.7
Glyma.20G086200 Glycine max HOM05D005475 ORTHO05D006575 1.0e-10 70.1 79 51.9
Phvul.L002444 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 1.0e-10 70.1 82 50.0
Sc13g0006140 Simmondsia chinensis HOM05D005475 ORTHO05D006575 1.0e-10 70.1 74 58.1
TPR.G27310 Trifolium pratense HOM05D005475 ORTHO05D006575 1.4e-10 69.7 73 52.1
Atru.chr4.1933 Acer truncatum HOM05D005475 ORTHO05D006575 1.8e-10 69.3 82 50.0
Lalb_Chr06g0169471 Lupinus albus HOM05D005475 ORTHO05D006575 1.8e-10 69.3 74 51.4
Lj6g0010293 Lotus japonicus HOM05D005475 ORTHO05D006575 2.3e-10 68.9 82 50.0
SalBow3G2868 Salvia bowleyana HOM05D005475 ORTHO05D006575 2.3e-10 68.9 68 55.9
Glyma.10G189800 Glycine max HOM05D005475 ORTHO05D006575 3.0e-10 68.6 82 50.0
Potri.008G170700 Populus trichocarpa HOM05D005475 ORTHO05D006575 3.0e-10 68.6 84 50.0
FAN17G2060 Fragaria x ananassa HOM05D005475 ORTHO05D006575 3.9e-10 68.2 81 51.9
CsaV3_3G011800 Cucumis sativus L. HOM05D005475 ORTHO05D006575 5.1e-10 67.8 73 47.9
Migut.N00292 Erythranthe guttata HOM05D005475 ORTHO05D006575 5.1e-10 67.8 83 57.8
Gorai.005G053100 Gossypium raimondii HOM05D005475 ORTHO05D006575 5.1e-10 67.8 72 48.6
Gohir.A02G042200 Gossypium hirsutum HOM05D005475 ORTHO05D006575 6.7e-10 67.4 72 47.2
Gohir.D02G047800 Gossypium hirsutum HOM05D005475 ORTHO05D006575 6.7e-10 67.4 72 47.2
Nn1g02914 Nelumbo nucifera HOM05D005475 ORTHO05D006575 6.7e-10 67.4 65 56.9
Manes.03G160400 Manihot esculenta HOM05D005475 ORTHO05D006575 8.8e-10 67.0 79 48.1
MBI07_g18714_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 1.1e-09 66.6 77 50.6
THA.LOC104816000 Tarenaya hassleriana HOM05D005475 ORTHO05D006575 1.1e-09 66.6 80 48.8
Sabra10G0040200 Salix brachista HOM05D005475 ORTHO05D006575 1.5e-09 66.2 79 51.9
Psat6g117200 Pisum sativum HOM05D005475 ORTHO05D006575 2.0e-09 65.9 81 45.7
FvH4_4g04340 Fragaria vesca HOM05D005475 ORTHO05D006575 2.5e-09 65.5 78 51.3
FAN22G1457 Fragaria x ananassa HOM05D005475 ORTHO05D006575 2.5e-09 65.5 77 51.9
RcHm_v2.0_Chr4g0394791 Rosa chinensis HOM05D005475 ORTHO05D006575 4.3e-09 64.7 45 64.4
Sabra08G0130500 Salix brachista HOM05D005475 ORTHO05D006575 4.3e-09 64.7 81 50.6
Aa31LG1G20410 Aethionema arabicum HOM05D005475 ORTHO05D006575 5.7e-09 64.3 72 41.7
AL4G29060 Arabidopsis lyrata HOM05D005475 ORTHO05D006575 7.4e-09 63.9 72 44.4
FAN12G1687 Fragaria x ananassa HOM05D005475 ORTHO05D006575 7.4e-09 63.9 63 55.6
Thhalv10017471m.g Eutrema salsugineum HOM05D005475 ORTHO05D006575 9.7e-09 63.5 72 44.4
CARHR127400 Cardamine hirsuta HOM05D005475 ORTHO05D006575 1.7e-08 62.8 73 46.6
MBI10_g38466_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 2.2e-08 62.4 73 53.4
PGR031G0084 Punica granatum HOM05D005475 ORTHO05D006575 2.2e-08 62.4 81 48.1
Hund03078 Selenicereus undatus HOM05D005475 ORTHO05D006575 2.2e-08 62.4 80 45.0
Medtr1g073660 Medicago truncatula HOM05D005475 ORTHO05D006575 2.8e-08 62.0 78 46.2
AT2G33390 Arabidopsis thaliana HOM05D005475 ORTHO05D006575 3.7e-08 61.6 72 44.4
FAN22G0728 Fragaria x ananassa HOM05D005475 ORTHO05D006575 4.8e-08 61.2 59 55.9
Aa31LG5G3900 Aethionema arabicum HOM05D005475 ORTHO05D006575 8.2e-08 60.5 72 41.7
RcHm_v2.0_Chr4g0394821 Rosa chinensis HOM05D005475 ORTHO05D006575 8.2e-08 60.5 41 63.4
ECA248G3571 Erigeron canadensis HOM05D000730 ORTHO05D000578 1.1e-07 60.1 65 53.8
Carub.0004s1502 Capsella rubella HOM05D005475 ORTHO05D006575 1.8e-07 59.3 73 41.1
CDE08G0603 Ceratophyllum demersum HOM05D005475 ORTHO05D006575 1.8e-07 59.3 80 43.8
Lj5g0027748 Lotus japonicus HOM05D005475 ORTHO05D006575 3.1e-07 58.5 82 45.1
Sp4g15710 Schrenkiella parvula HOM05D005475 ORTHO05D006575 3.1e-07 58.5 72 40.3
Lsat_1_v5_gn_1_75221 Lactuca sativa HOM05D005475 ORTHO05D006575 9.1e-07 57.0 76 44.7
AUR62002181 Chenopodium quinoa HOM05D005475 ORTHO05D006575 1.2e-06 56.6 80 48.8
AUR62015529 Chenopodium quinoa HOM05D005475 ORTHO05D006575 1.2e-06 56.6 80 48.8
Aqoxy2G03723 Aquilegia oxysepala HOM05D005475 ORTHO05D006575 2.6e-06 55.5 79 41.8
PSO674G0109 Papaver somniferum HOM05D005475 ORTHO05D006575 3.4e-06 55.1 77 45.5
PSO832G2786 Papaver somniferum HOM05D005475 ORTHO05D006575 4.5e-06 54.7 77 45.5
TPR.G28846 Trifolium pratense HOM05D005475 ORTHO05D006575 5.9e-06 54.3 81 43.2
EL10Ac3g04956 Beta vulgaris HOM05D005475 ORTHO05D006575 7.7e-06 53.9 79 49.4


User provided reference genes

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